Clone Name | rbasd1b14 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ310426.1|HVU310426 Hordeum vulgare mRNA for cathepsin B (cathB gene) Length = 1277 Score = 337 bits (170), Expect = 7e-90 Identities = 174/176 (98%) Strand = Plus / Minus Query: 1 gcgatgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1083 gcgatgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattc 1024 Query: 61 ttgccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgca 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1023 ttgccccttatgatcttgaagtatccgtcatcaccccagcctctgttccactgatttgca 964 Query: 121 agaagccagtaatcctcgccagcatnactggttccccaaccaatcaacttgacggc 176 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 963 agaagccagtaatcctcgccagcatcactggttccccaaccaatcaacttgacggc 908
>emb|X66012.1|TACATHBA T.aestivum mRNA 1 for cathepsin B (2529) Length = 1065 Score = 289 bits (146), Expect = 1e-75 Identities = 168/176 (95%) Strand = Plus / Minus Query: 1 gcgatgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattc 60 ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 896 gcgatgttctttgtcgagggcataccggcagtaacatcttcttcgatgccacattcattc 837 Query: 61 ttgccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgca 120 |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 836 ttgccccttatgatcttgaagtacccgtcatcgccccagcctctgttccactgatttgca 777 Query: 121 agaagccagtaatcctcgccagcatnactggttccccaaccaatcaacttgacggc 176 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct: 776 agaagccagtaatcctcgccagcatcactagttccccaaccaatcaacttgacggc 721
>gb|BT016464.1| Zea mays clone Contig297 mRNA sequence Length = 1136 Score = 190 bits (96), Expect = 1e-45 Identities = 124/134 (92%) Strand = Plus / Minus Query: 43 tcgatgccacattcattcttgccccttangatcttgaagtatccgtcatcaccccagcct 102 ||||||||||||||||| |||||||||| ||||||||||||||| || || ||||||||| Sbjct: 820 tcgatgccacattcatttttgccccttatgatcttgaagtatccatcgtcgccccagcct 761 Query: 103 ctgttccactgatttgcaagaagccagtaatcctcgccagcatnactggttccccaacca 162 || |||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||| Sbjct: 760 ctattccactgatttgccagaagccagtaatcctctccagcatcactggttccccatcca 701 Query: 163 atcaacttgacggc 176 |||||||||||||| Sbjct: 700 atcaacttgacggc 687
>dbj|AK101093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024N03, full insert sequence Length = 1437 Score = 190 bits (96), Expect = 1e-45 Identities = 151/170 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 1220 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1161 Query: 64 ccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaaga 123 ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1160 ccccttatgatcttgaagtacccatcatcgccccatcctctgttccactggtttgcaagc 1101 Query: 124 agccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1100 agccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 1051
>dbj|AK100225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047M19, full insert sequence Length = 1436 Score = 190 bits (96), Expect = 1e-45 Identities = 151/170 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 1218 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1159 Query: 64 ccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaaga 123 ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1158 ccccttatgatcttgaagtacccatcatcgccccatcctctgttccactggtttgcaagc 1099 Query: 124 agccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1098 agccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 1049
>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full insert sequence Length = 3464 Score = 190 bits (96), Expect = 1e-45 Identities = 151/170 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 1349 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1290 Query: 64 ccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaaga 123 ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1289 ccccttatgatcttgaagtacccatcatcgccccatcctctgttccactggtttgcaagc 1230 Query: 124 agccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1229 agccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 1180
>dbj|AK064820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E23, full insert sequence Length = 1369 Score = 190 bits (96), Expect = 1e-45 Identities = 151/170 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 1151 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1092 Query: 64 ccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaaga 123 ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1091 ccccttatgatcttgaagtacccatcatcgccccatcctctgttccactggtttgcaagc 1032 Query: 124 agccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1031 agccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 982
>dbj|AK059697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C04, full insert sequence Length = 1565 Score = 190 bits (96), Expect = 1e-45 Identities = 151/170 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 1150 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1091 Query: 64 ccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaaga 123 ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1090 ccccttatgatcttgaagtacccatcatcgccccatcctctgttccactggtttgcaagc 1031 Query: 124 agccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1030 agccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 981
>gb|AY916493.1| Oryza sativa (japonica cultivar-group) cathepsin B-like cysteine protease mRNA, complete cds Length = 1475 Score = 190 bits (96), Expect = 1e-45 Identities = 151/170 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 1172 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 1113 Query: 64 ccccttangatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaaga 123 ||||||| |||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct: 1112 ccccttatgatcttgaagtacccatcatcgccccatcctctgttccactggtttgcaagc 1053 Query: 124 agccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1052 agccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 1003
>gb|AY112465.1| Zea mays CL31697_1 mRNA sequence Length = 1472 Score = 168 bits (85), Expect = 4e-39 Identities = 120/134 (89%) Strand = Plus / Plus Query: 43 tcgatgccacattcattcttgccccttangatcttgaagtatccgtcatcaccccagcct 102 ||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||| Sbjct: 269 tcgatgccacattcannnnngccccttatgatcttgaagtatccatcatcgccccagcct 328 Query: 103 ctgttccactgatttgcaagaagccagtaatcctcgccagcatnactggttccccaacca 162 || |||||||||||||| |||||||||||||| || ||||||| |||||||||||| ||| Sbjct: 329 ctattccactgatttgccagaagccagtaatcttctccagcatcactggttccccatcca 388 Query: 163 atcaacttgacggc 176 |||||||||||||| Sbjct: 389 atcaacttgacggc 402
>emb|X66014.1|TACATHBB T.aestivum mRNA 2 for cathepsin B (2077) Length = 1216 Score = 151 bits (76), Expect = 8e-34 Identities = 81/83 (97%) Strand = Plus / Minus Query: 94 ccccagcctctgttccactgatttgcaagaagccagtaatcctcgccagcatnactggtt 153 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1216 ccccagcctctgttccactgatttgcaagaagccagtaatcctcgccagcatcactggtt 1157 Query: 154 ccccaaccaatcaacttgacggc 176 |||||||| |||||||||||||| Sbjct: 1156 ccccaaccgatcaacttgacggc 1134
>emb|X66013.1|TACATHBG T.aestivum gene for cathepsin B (Al16) Length = 4792 Score = 115 bits (58), Expect = 5e-23 Identities = 78/85 (91%) Strand = Plus / Minus Query: 5 tgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttgc 64 ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| || Sbjct: 4324 tgttctttgtcgagggcataccggcagtaacatcgccttcgatgccacattcattctcgc 4265 Query: 65 cccttangatcttgaagtatccgtc 89 |||||| |||||||||||||||||| Sbjct: 4264 cccttatgatcttgaagtatccgtc 4240 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 126 ccagtaatcctcgccagcatnactggttccccaaccaatcaacttgacggc 176 |||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 4031 ccagtaatcctcgccagcatcactggttccccaaccgatcaacttgacggc 3981 Score = 75.8 bits (38), Expect = 4e-11 Identities = 38/38 (100%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgcaagaagc 126 |||||||||||||||||||||||||||||||||||||| Sbjct: 4151 catcaccccagcctctgttccactgatttgcaagaagc 4114
>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02, complete sequence Length = 146541 Score = 89.7 bits (45), Expect = 3e-15 Identities = 71/80 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 111792 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 111733 Query: 64 ccccttangatcttgaagta 83 ||||||| |||||||||||| Sbjct: 111732 ccccttatgatcttgaagta 111713 Score = 65.9 bits (33), Expect = 4e-08 Identities = 44/48 (91%) Strand = Plus / Minus Query: 126 ccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 111483 ccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 111436 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgcaag 122 |||| ||||| |||||||||||||| |||||||| Sbjct: 111611 catcgccccatcctctgttccactggtttgcaag 111578
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 89.7 bits (45), Expect = 3e-15 Identities = 71/80 (88%) Strand = Plus / Minus Query: 4 atgttcttcatcgagggcataccggctgtaacatcttcttcgatgccacattcattcttg 63 ||||||||| ||||||||||||| || |||||||||||||||||||||||| || || Sbjct: 14031715 atgttcttcgtcgagggcataccagcaacaacatcttcttcgatgccacattcgtttgtg 14031656 Query: 64 ccccttangatcttgaagta 83 ||||||| |||||||||||| Sbjct: 14031655 ccccttatgatcttgaagta 14031636 Score = 65.9 bits (33), Expect = 4e-08 Identities = 44/48 (91%) Strand = Plus / Minus Query: 126 ccagtaatcctcgccagcatnactggttccccaaccaatcaacttgac 173 |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 14031406 ccagtaatcctcgccagcatccgtggttccccatccaatcaacttgac 14031359 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgcaag 122 |||| ||||| |||||||||||||| |||||||| Sbjct: 14031534 catcgccccatcctctgttccactggtttgcaag 14031501
>gb|AY662990.1| Petunia x hybrida cysteine proteinase (CP4) mRNA, partial cds Length = 630 Score = 85.7 bits (43), Expect = 4e-14 Identities = 84/98 (85%) Strand = Plus / Minus Query: 40 tcttcgatgccacattcattcttgccccttangatcttgaagtatccgtcatcaccccag 99 ||||| ||| ||||||| ||| | || ||| |||||| ||||| || |||||||||||| Sbjct: 284 tcttctatgtcacattcgttcgttcctcttctgatcttaaagtacccatcatcaccccag 225 Query: 100 cctctgttccactgatttgcaagaagccagtaatcctc 137 ||||||||||||||||| ||||||||||| || ||||| Sbjct: 224 cctctgttccactgattggcaagaagccaatagtcctc 187
>emb|X81995.1|NRCATHB N.rustica mRNA for cathepsin B-like cysteine proteinase Length = 1331 Score = 83.8 bits (42), Expect = 2e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaagaagccagta 131 |||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 969 gatcttaaagtaaccatcatcaccccagcctctgttccactgattggcaagaagccaata 910 Query: 132 atcctc 137 ||||| Sbjct: 909 gtcctc 904
>emb|AJ251536.1|PSA251536 Pisum sativum partial mRNA for putative cathepsin B-like protease (cat1 gene) clone PsCat1 Length = 705 Score = 69.9 bits (35), Expect = 2e-09 Identities = 108/133 (81%) Strand = Plus / Minus Query: 26 cggctgtaacatcttcttcgatgccacattcattcttgccccttangatcttgaagtatc 85 ||||||||||||| ||||| || ||||||||||| | || || |||||||||||| | Sbjct: 499 cggctgtaacatcctcttcaatcccacattcatttgtccctctcttgatcttgaagtaac 440 Query: 86 cgtcatcaccccagcctctgttccactgatttgcaagaagccagtaatcctcgccagcat 145 | ||||| ||||| | | ||||||||||||||||||||||| || ||||| || ||| Sbjct: 439 catcatctccccaatttgtattccactgatttgcaagaagccaatagtcctccccttcat 380 Query: 146 nactggttcccca 158 ||| |||||||| Sbjct: 379 cacttgttcccca 367
>gb|DQ492287.1| Nicotiana benthamiana cathepsin B (CathB) mRNA, complete cds Length = 1353 Score = 67.9 bits (34), Expect = 1e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaagaagccagta 131 |||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| || Sbjct: 957 gatcttaaagtaaccgtcatcaccccaacctctattccattgattggcaagaagccaata 898 Query: 132 atcctc 137 ||||| Sbjct: 897 gtcctc 892
>ref|NM_100110.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type peptidase AT1G02300 mRNA, complete cds Length = 1227 Score = 65.9 bits (33), Expect = 4e-08 Identities = 60/69 (86%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaagaagccagta 131 |||||||||||| || ||||||||||||| || |||||| ||||||||||| | ||| || Sbjct: 1023 gatcttgaagtaaccatcatcaccccagcttcggttccattgatttgcaagcaaccaata 964 Query: 132 atcctcgcc 140 ||| ||||| Sbjct: 963 atcttcgcc 955
>dbj|AK221536.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine proteinase like protein, complete cds, clone: RAFL07-69-N22 Length = 1520 Score = 65.9 bits (33), Expect = 4e-08 Identities = 60/69 (86%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaagaagccagta 131 |||||||||||| || ||||||||||||| || |||||| ||||||||||| | ||| || Sbjct: 1259 gatcttgaagtaaccatcatcaccccagcttcggttccattgatttgcaagcaaccaata 1200 Query: 132 atcctcgcc 140 ||| ||||| Sbjct: 1199 atcttcgcc 1191
>ref|NM_100111.1| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type peptidase AT1G02305 mRNA, complete cds Length = 1277 Score = 61.9 bits (31), Expect = 6e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || ||||||||||||| || |||||| ||||||||||| Sbjct: 1010 gatcttgaagtacccatcatcaccccagcttcggttccattgatttgcaag 960
>gb|AF428337.1|AF428337 Arabidopsis thaliana At1g02300/T6A9_10 mRNA, complete cds Length = 1277 Score = 61.9 bits (31), Expect = 6e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || ||||||||||||| || |||||| ||||||||||| Sbjct: 1078 gatcttgaagtacccatcatcaccccagcttcggttccattgatttgcaag 1028
>gb|AY039887.1| Arabidopsis thaliana At1g02300/T6A9_10 mRNA, complete cds Length = 1277 Score = 61.9 bits (31), Expect = 6e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || ||||||||||||| || |||||| ||||||||||| Sbjct: 1010 gatcttgaagtacccatcatcaccccagcttcggttccattgatttgcaag 960
>emb|BX815386.1|CNS0AAL6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZE10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1305 Score = 61.9 bits (31), Expect = 6e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || ||||||||||||| || |||||| ||||||||||| Sbjct: 1033 gatcttgaagtacccatcatcaccccagcttcggttccattgatttgcaag 983
>gb|BT002227.1| Arabidopsis thaliana At1g02300/T6A9_10 mRNA, complete cds Length = 1089 Score = 61.9 bits (31), Expect = 6e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || ||||||||||||| || |||||| ||||||||||| Sbjct: 972 gatcttgaagtacccatcatcaccccagcttcggttccattgatttgcaag 922
>ref|NM_116392.2| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type peptidase AT4G01610 transcript variant AT4G01610.1 mRNA, complete cds Length = 1431 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1109 tcatcaccccagcctctgttccattgatttgc 1078
>ref|NM_178950.1| Arabidopsis thaliana cysteine-type endopeptidase/ cysteine-type peptidase AT4G01610 transcript variant AT4G01610.2 mRNA, complete cds Length = 1431 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1109 tcatcaccccagcctctgttccattgatttgc 1078
>gb|AF083797.1| Arabidopsis thaliana clone sps897 unknown mRNA Length = 1318 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 989 tcatcaccccagcctctgttccattgatttgc 958
>gb|AY114015.1| Arabidopsis thaliana putative cathepsin B cysteine protease (At4g01610) mRNA, complete cds Length = 1111 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 947 tcatcaccccagcctctgttccattgatttgc 916
>gb|AF370193.1| Arabidopsis thaliana putative cathepsin B cysteine protease (At4g01610) mRNA, complete cds Length = 1391 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1059 tcatcaccccagcctctgttccattgatttgc 1028
>gb|AY065167.1| Arabidopsis thaliana unknown protein (T15B16.17a:T15B16.17b) mRNA, complete cds Length = 1337 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1046 tcatcaccccagcctctgttccattgatttgc 1015
>dbj|AK221398.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL25-46-G18 Length = 1336 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1013 tcatcaccccagcctctgttccattgatttgc 982
>gb|AY086034.1| Arabidopsis thaliana clone 20761 mRNA, complete sequence Length = 1429 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1109 tcatcaccccagcctctgttccattgatttgc 1078
>dbj|AK176487.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL24-30-A18 Length = 1399 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1090 tcatcaccccagcctctgttccattgatttgc 1059
>dbj|AK176433.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL24-18-F01 Length = 1332 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1006 tcatcaccccagcctctgttccattgatttgc 975
>dbj|AK176416.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL24-14-K07 Length = 1432 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1102 tcatcaccccagcctctgttccattgatttgc 1071
>dbj|AK176330.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL23-32-C20 Length = 1340 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1013 tcatcaccccagcctctgttccattgatttgc 982
>dbj|AK176281.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL23-21-C10 Length = 1290 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1006 tcatcaccccagcctctgttccattgatttgc 975
>dbj|AK176244.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL23-13-K22 Length = 1340 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1013 tcatcaccccagcctctgttccattgatttgc 982
>dbj|AK176165.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL23-01-L04 Length = 1340 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1013 tcatcaccccagcctctgttccattgatttgc 982
>dbj|AK175539.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL21-96-A03 Length = 1342 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1016 tcatcaccccagcctctgttccattgatttgc 985
>dbj|AK175481.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL21-91-G20 Length = 1343 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1013 tcatcaccccagcctctgttccattgatttgc 982
>dbj|AK175280.1| Arabidopsis thaliana mRNA for cathepsin B-like cysteine protease, complete cds, clone: RAFL21-71-M19 Length = 1342 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 1015 tcatcaccccagcctctgttccattgatttgc 984
>gb|BT001190.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 1207 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 88 tcatcaccccagcctctgttccactgatttgc 119 ||||||||||||||||||||||| |||||||| Sbjct: 947 tcatcaccccagcctctgttccattgatttgc 916
>gb|AY450641.1| Solanum tuberosum cathepsin B-like cysteine proteinase mRNA, complete cds Length = 1262 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttcca 110 ||||||||||||||| || |||||||||||||| ||||| Sbjct: 954 gatcttgaagtatccatcttcaccccagcctctattcca 916
>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4 Length = 198697 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgc 119 |||||||||||||||||||||| |||||||| Sbjct: 119280 catcaccccagcctctgttccattgatttgc 119250
>gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16 Length = 90596 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 89 catcaccccagcctctgttccactgatttgc 119 |||||||||||||||||||||| |||||||| Sbjct: 74693 catcaccccagcctctgttccattgatttgc 74723
>gb|BT014624.1| Lycopersicon esculentum clone 134127R, mRNA sequence Length = 1263 Score = 52.0 bits (26), Expect = 6e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 73 atcttgaagtatccgtcatcaccccagcctctgttcca 110 |||||||||||||| || |||||||||||||| ||||| Sbjct: 992 atcttgaagtatccatcttcaccccagcctctattcca 955
>gb|AF101239.1|AF101239 Ipomoea batatas cathepsin B-like cysteine proteinase (CathB) mRNA, complete cds Length = 1248 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 72 gatcttgaagtatccgtcatcaccccagcctctgttccactgatt 116 |||||||||||| || ||| | ||||||| ||||||||||||||| Sbjct: 970 gatcttgaagtacccatcaccgccccagcttctgttccactgatt 926
>gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete sequence Length = 109180 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || |||||| ||||||||||| Sbjct: 52768 catcaccccagcttcggttccattgatttgcaag 52735 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || |||||| ||||||||||| Sbjct: 50164 catcaccccagcttcggttccattgatttgcaag 50131
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence Length = 106973 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatttgcaag 122 |||||||||||| || |||||| ||||||||||| Sbjct: 105536 catcaccccagcttcggttccattgatttgcaag 105503
>gb|AC149038.2| Medicago truncatula chromosome 7 BAC clone mth2-29a5, complete sequence Length = 136566 Score = 42.1 bits (21), Expect = 0.55 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 ttccactgatttgcaagaagc 126 ||||||||||||||||||||| Sbjct: 20567 ttccactgatttgcaagaagc 20587 Score = 42.1 bits (21), Expect = 0.55 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 ttccactgatttgcaagaagc 126 ||||||||||||||||||||| Sbjct: 13681 ttccactgatttgcaagaagc 13701
>ref|XM_457137.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B03960g) partial mRNA Length = 3057 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tcttgaagtatccgtcatca 93 |||||||||||||||||||| Sbjct: 865 tcttgaagtatccgtcatca 846
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tcttgaagtatccgtcatca 93 |||||||||||||||||||| Sbjct: 327115 tcttgaagtatccgtcatca 327096
>gb|AF283476.1|AF283476 Ipomoea batatas cathepsin B-like cysteine proteinase gene, complete cds Length = 3334 Score = 40.1 bits (20), Expect = 2.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 89 catcaccccagcctctgttccactgatt 116 |||| ||||||| ||||||||||||||| Sbjct: 2832 catcgccccagcttctgttccactgatt 2805
>emb|AJ249847.1|LMU249847 Lolium multiflorum mRNA for cysteine protease (see1 gene) Length = 1345 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 73 atcttgaagtatccgtcatcaccccag 99 ||||||||||| ||||| ||||||||| Sbjct: 1051 atcttgaagtaaccgtcttcaccccag 1025
>emb|AL731557.7| Human DNA sequence from clone RP11-501J20 on chromosome 10 Contains two novel genes, the gene for a novel protein (possible ortholog of rodent ventral anterior homeobox containing gene 1 (VAX1)), a ribosomal protein L12 (RPL12) pseudogene, the 5' end of the SLC18A2 gene for member 2 solute carrier family 18 (vesicular monoamine), a novel gene and ten CpG islands, complete sequence Length = 142068 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acattcattcttgcccctt 69 ||||||||||||||||||| Sbjct: 35902 acattcattcttgcccctt 35884
>emb|AL354657.12| Human DNA sequence from clone GS1-80M18 on chromosome 1, complete sequence Length = 60059 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 gatgccacattcattcttg 63 ||||||||||||||||||| Sbjct: 18136 gatgccacattcattcttg 18118
>emb|X99936.1|ZMSEE1 Z.mays mRNA for cysteine proteinase, See1 Length = 1412 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 73 atcttgaagtatccgtcatcaccccag 99 ||||||||||| || |||||||||||| Sbjct: 1084 atcttgaagtaaccctcatcaccccag 1058
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 cccagcctctgttccactg 113 ||||||||||||||||||| Sbjct: 144502 cccagcctctgttccactg 144484
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gatgttcttcatcgagggc 21 ||||||||||||||||||| Sbjct: 15742 gatgttcttcatcgagggc 15724
>dbj|AK127095.1| Homo sapiens cDNA FLJ45152 fis, clone BRAWH3042568, highly similar to Mus musculus ventral anterior homeobox containing gene 1 (Vax1) Length = 4493 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 acattcattcttgcccctt 69 ||||||||||||||||||| Sbjct: 84 acattcattcttgcccctt 102
>gb|AC009481.4|AC009481 Homo sapiens BAC clone RP11-303D3 from 1, complete sequence Length = 191896 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 gatgccacattcattcttg 63 ||||||||||||||||||| Sbjct: 39931 gatgccacattcattcttg 39949
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 ccagcctctgttccactga 114 ||||||||||||||||||| Sbjct: 965307 ccagcctctgttccactga 965289
>emb|AJ324882.1|HSA324882 Homo sapiens genomic sequence surrounding NotI site, clone NR5-IH24C Length = 641 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 acattcattcttgcccctt 69 ||||||||||||||||||| Sbjct: 27 acattcattcttgcccctt 45
>gb|AY106223.1| Zea mays PCO114759 mRNA sequence Length = 1532 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 73 atcttgaagtatccgtcatcaccccag 99 ||||||||||| || |||||||||||| Sbjct: 1106 atcttgaagtaaccatcatcaccccag 1080
>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence Length = 204569 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 cccagcctctgttccactg 113 ||||||||||||||||||| Sbjct: 66143 cccagcctctgttccactg 66125
>ref|NM_199131.1| Homo sapiens ventral anterior homeobox 1 (VAX1), mRNA Length = 4493 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 acattcattcttgcccctt 69 ||||||||||||||||||| Sbjct: 84 acattcattcttgcccctt 102
>dbj|D45403.1|MZECYPA Corn mRNA for cysteine proteinase, clone CCP2, complete cds Length = 1382 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 73 atcttgaagtatccgtcatcaccccag 99 ||||||||||| || |||||||||||| Sbjct: 1073 atcttgaagtaaccctcatcaccccag 1047 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,340,176 Number of Sequences: 3902068 Number of extensions: 1340176 Number of successful extensions: 104789 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104639 Number of HSP's gapped (non-prelim): 148 length of query: 176 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 154 effective length of database: 17,147,199,772 effective search space: 2640668764888 effective search space used: 2640668764888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)