ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1b13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intr... 78 1e-11
2gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 2.9
3tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 2.9

>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1067

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 103 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc 153
           ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattc 882



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 44/50 (88%), Gaps = 2/50 (4%)
 Strand = Plus / Minus

                                                              
Query: 1    actcaactgnagnattctgcaaaccccaacaacttgcacaacatcacatt 50
            ||||||||| |  ||||| ||||||||| |||||| ||||||||||||||
Sbjct: 1014 actcaactgaaaaattct-caaaccccaccaactt-cacaacatcacatt 967



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>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete
              sequence
          Length = 222430

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tctgaaccaaacaacatgac 129
              ||||||||||||||||||||
Sbjct: 111593 tctgaaccaaacaacatgac 111574



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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     tctgaaccaaacaacatgac 129
               ||||||||||||||||||||
Sbjct: 1893522 tctgaaccaaacaacatgac 1893503


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,421,223
Number of Sequences: 3902068
Number of extensions: 1421223
Number of successful extensions: 21477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21470
Number of HSP's gapped (non-prelim): 7
length of query: 229
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 207
effective length of database: 17,147,199,772
effective search space: 3549470352804
effective search space used: 3549470352804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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