>CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 736

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26  RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 139
           R++ +T ++PF C M  + +  V   KRHIR H G+  F
Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379

>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 737

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26  RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 139
           R++ +T ++PF C M  + +  V   KRHIR H G+  F
Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379

>CTCF_CHICK (Q08705) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 728

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26  RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 139
           R++ +T ++PF C M  + +  V   KRHIR H G+  F
Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379

>V232_FOWPV (Q9J503) Putative ankyrin repeat protein FPV232|
          Length = 482

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 455 RAITFSCRNNGINIVKTYFSIDVQRTCNFL-ICTMPYDHS 571
           RAI+ +C NN INI K     D  RT + + +CT+ YD S
Sbjct: 104 RAISEACYNNDINIFKMLLLNDGNRTIDDVQLCTIDYDDS 143

>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 727

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26  RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 139
           R++ +T ++PF C M  + +  V   KRHIR H G+  F
Sbjct: 341 RRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPF 379

>WTF19_SCHPO (O74486) Hypothetical protein wtf19|
          Length = 393

 Score = 26.9 bits (58), Expect(2) = 3.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 471 LKVIALTTRTIRNGLYNTKKDRVARNNSKKDNLFIYFSKWCPRCFSFGIS 322
           L  I++    +    Y T KD + ++  K +  ++YF+ WC  C    IS
Sbjct: 106 LSFISIFVLNVPAVCYLTYKDALFKDYGKDE--WVYFAVWCASCLMIFIS 153



 Score = 22.3 bits (46), Expect(2) = 3.9
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 251 CLIIFISFFY-YVGWCMKVNI 192
           CL+IFIS +Y Y  W   V +
Sbjct: 147 CLMIFISLWYFYETWIKAVKV 167

>BORIS_HUMAN (Q8NI51) Transcriptional repressor CTCFL (CCCTC-binding factor)|
           (Brother of the regulator of imprinted sites) (Zinc
           finger protein CTCF-T) (CTCF paralog)
          Length = 663

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 26  RQFTYTFQQPFSCVMHTWINSNV*-FKRHIRGHKGDNNF 139
           R++ +T ++PF C M  + +      KRH+R H G+  F
Sbjct: 332 RRYKHTHEKPFKCSMCKYASVEASKLKRHVRSHTGERPF 370

>WTF23_SCHPO (O94409) Hypothetical protein wtf23|
          Length = 368

 Score = 25.8 bits (55), Expect(2) = 8.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 471 LKVIALTTRTIRNGLYNTKKDRVARNNSKKDNLFIYFSKWCPRCFSFGIS 322
           L  I++    +    Y T KD + ++  K +  ++YF  WC  C    IS
Sbjct: 106 LSFISIFVLNVPAVCYLTYKDALFKDYGKDE--WVYFGVWCAICLMIFIS 153



 Score = 22.3 bits (46), Expect(2) = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 251 CLIIFISFFY-YVGWCMKVNI 192
           CL+IFIS +Y Y  W   V +
Sbjct: 147 CLMIFISLWYFYETWIKAVKV 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,829,064
Number of Sequences: 219361
Number of extensions: 1846363
Number of successful extensions: 3748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3743
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)