ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B2_DAUCA (P37707) B2 protein 142 9e-34
2ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (A... 32 1.3
3AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK) 32 1.7
4IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment) 32 2.2
5ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (A... 31 3.7
6ALDO4_ARATH (Q7G191) Aldehyde oxidase 4 (EC 1.2.3.1) (AtAO-4) (A... 30 4.8
7VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (M... 30 6.3
8KRA31_HUMAN (Q9BYR8) Keratin-associated protein 3-1 (Keratin-ass... 30 8.2
9RNZ_LACAC (Q5FKH3) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa... 30 8.2

>B2_DAUCA (P37707) B2 protein|
          Length = 207

 Score =  142 bits (358), Expect = 9e-34
 Identities = 64/86 (74%), Positives = 76/86 (88%)
 Frame = -1

Query: 642 HQLHGVFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRRLCKALEEDAFRPVLHHY 463
           HQLHGVFEAASFGG+NIDPTAWEDKK +GESRFPAQVR+  R++C+ LEED+FRP+LHHY
Sbjct: 122 HQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHY 181

Query: 462 DGPKFRLELSIAETLSLLDLCKSEDA 385
           DGPKFRLEL+I E +SLLD+ +   A
Sbjct: 182 DGPKFRLELNIPEAISLLDIFEETKA 207



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>ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (AtAO1)|
          Length = 1368

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
 Frame = -1

Query: 507 KALEEDAFRPV-------LHHYDGPKFRLELS-IAETLSLLDLCKSEDA*SA-----SEH 367
           KA++ED    +       +   +G +F LELS I  + +L+D  +++    +      E 
Sbjct: 4   KAIDEDKVEAMKSSKTSLVFAINGQRFELELSSIDPSTTLVDFLRNKTPFKSVKLGCGEG 63

Query: 366 GCGCSVVLFSKYHP 325
           GCG  VVL SKY P
Sbjct: 64  GCGACVVLLSKYDP 77



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>AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 180

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 615 ASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRRLCKALEEDAFRPVLHHYD 460
           A+ GG+ +DP   E+++C  E  F   ++I +    + L  D +RP+L   D
Sbjct: 79  ATGGGTILDP---ENRRCMQERGFVVFLKINVNTQLERLAHDRYRPLLQQID 127



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>IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment)|
          Length = 646

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 195 HLRGLLLPSTRSFLGEMQPPTNSLRFHGRRTEQNIVKTSSTTYR 326
           H  G LL    + L +++ P      +G+R   N++KTS TT++
Sbjct: 589 HCFGFLLHLPSNELSKVESPETETSVYGKRLVYNLIKTSPTTFK 632



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>ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (AtAO3)|
          Length = 1321

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -1

Query: 462 DGPKFRLELSIAE-TLSLLDLCKSEDA*-----SASEHGCGCSVVLFSKYHP 325
           +G +F LELS  + + +LL+  + + +      S  E GCG  VVL SK+ P
Sbjct: 8   NGQRFELELSSVDPSTTLLEFLRYQTSFKSVKLSCGEGGCGACVVLLSKFDP 59



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>ALDO4_ARATH (Q7G191) Aldehyde oxidase 4 (EC 1.2.3.1) (AtAO-4) (AtAO2)|
          Length = 1337

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -1

Query: 462 DGPKFRLELSIAETLSLLDLCKSEDA*-----SASEHGCGCSVVLFSKYHP 325
           +G KF + LS+  + +LL+  +S         S  E GCG  +V+ SKY P
Sbjct: 11  NGEKFEV-LSVNPSTTLLEFLRSNTCFKSVKLSCGEGGCGACIVILSKYDP 60



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>VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (Minor|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP42]
          Length = 1912

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +3

Query: 126  HK*GEHTDHRXLRTNGTNTETGSHLRGLLLPSTRSFLGEMQPPTNSLRFHGRRTEQNIVK 305
            H+ GE   H   R+  +   +  H  G  L   R+FLG++ PP  ++     R++     
Sbjct: 1398 HRHGEKAAHSSRRSPTSRAASAHHRPGSSLTRERNFLGDVIPPGITIVAQAVRSDNRNQG 1457

Query: 306  TSSTTY 323
              +T Y
Sbjct: 1458 YQATAY 1463



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>KRA31_HUMAN (Q9BYR8) Keratin-associated protein 3-1 (Keratin-associated protein|
           3.1) (High sulfur keratin-associated protein 3.1)
          Length = 98

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
 Frame = -3

Query: 214 RSRPLRCEPVSVLVPFVRNXR*SVCSPYLC---------ICSAVCPPPAGKP 86
           RS  +   P +    F ++ R  VC P  C         IC   CPPP  KP
Sbjct: 7   RSCSVPTGPATTFCSFDKSCRCGVCLPSTCPHEISLLQPICCDTCPPPCCKP 58



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>RNZ_LACAC (Q5FKH3) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 312

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = +3

Query: 135 GEHTDHRXLRTN---------GTNTETGSHLRGLL-LPSTRSFLGEMQPPTNSLRFHGRR 284
           GE T H+ LRTN           +   G H+ GL  L STRSF G++ P    L  +G  
Sbjct: 39  GEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGP----LTIYGPA 94

Query: 285 TEQNIVKTSSTTYRDDI 335
             ++ VK S    R  I
Sbjct: 95  GIEDFVKISLKVSRTKI 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,672,931
Number of Sequences: 219361
Number of extensions: 2551013
Number of successful extensions: 6035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6029
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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