ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 38 3.0
2gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 38 3.0
3gb|AC183607.3| Pan troglodytes BAC clone CH251-277D11 from chrom... 38 3.0
4gb|AC093872.3| Homo sapiens BAC clone RP11-610P19 from 4, comple... 38 3.0
5gb|AC073461.6| Homo sapiens BAC clone RP11-68G5 from 2, complete... 38 3.0

>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    ccaagtgctacaactttac 33
             |||||||||||||||||||
Sbjct: 83879 ccaagtgctacaactttac 83897



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>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   atcatccaagtgctacaac 28
            |||||||||||||||||||
Sbjct: 1809 atcatccaagtgctacaac 1791



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>gb|AC183607.3| Pan troglodytes BAC clone CH251-277D11 from chromosome 7, complete
              sequence
          Length = 172027

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     aagtgctacaactttactg 35
              |||||||||||||||||||
Sbjct: 141737 aagtgctacaactttactg 141755



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>gb|AC093872.3| Homo sapiens BAC clone RP11-610P19 from 4, complete sequence
          Length = 59406

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 17    aagtgctacaactttactg 35
             |||||||||||||||||||
Sbjct: 55360 aagtgctacaactttactg 55342



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>gb|AC073461.6| Homo sapiens BAC clone RP11-68G5 from 2, complete sequence
          Length = 18744

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    atcatccaagtgctacaac 28
             |||||||||||||||||||
Sbjct: 18553 atcatccaagtgctacaac 18535


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 305,234
Number of Sequences: 3902068
Number of extensions: 305234
Number of successful extensions: 19324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19319
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 54
effective length of database: 17,151,101,840
effective search space: 926159499360
effective search space used: 926159499360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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