Clone Name | rbasd1a08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK072007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098F24, full insert sequence Length = 1819 Score = 252 bits (127), Expect = 1e-63 Identities = 289/343 (84%) Strand = Plus / Minus Query: 272 actgtctgttgaagggttggccatgcagcctcctcgtcgttgttgtagccattaacaaga 331 ||||| |||||||| ||||||||||||||||||||||| || |||| ||||| |||||| Sbjct: 1429 actgtttgttgaagcgttggccatgcagcctcctcgtcattactgtatccatttacaaga 1370 Query: 332 aaatagccgcagttcttctgccagtcttggttataaggattcctgaagcgtccatcaggc 391 |||| |||||||| || | || || | | |||||||||||||||||||| |||||| Sbjct: 1369 aaatcagcgcagttcctccggcatcctcgactgtaaggattcctgaagcgtccgtcaggc 1310 Query: 392 ccacgaagataagtgtagcgcgactgatttgcggcctcgttagttgtgagattcctggct 451 || |||||||| | ||||| ||||| ||||| || || |||||||||||||| | ||| Sbjct: 1309 ccccgaagatatgcatagcgtgactggtttgctgcttcattagttgtgagattgcgtgct 1250 Query: 452 atcattactgcttgtgctaccgtcaaaataagagctccagttaataagaaaatatccatg 511 ||| | |||||||||| | |||| |||||| |||||||| ||||| || | ||||||| Sbjct: 1249 atctgtgttgcttgtgctcctgtcagaataagcgctccagtcaataaaaagacatccatg 1190 Query: 512 aacatgaacagtacagcaccaggatgttttgtcaccatgaagtgagtccacgactcagaa 571 |||||||||||||||||||||||||| |||| || |||||||| | |||| ||||||||| Sbjct: 1189 aacatgaacagtacagcaccaggatggtttgacagcatgaagttaatccatgactcagaa 1130 Query: 572 gatgacaatataatgggctcggtccaaagtctgtggaatccaa 614 ||||| | |||||||||||| ||||||||||||||||| |||| Sbjct: 1129 gatgagagtataatgggctctgtccaaagtctgtggaacccaa 1087
>gb|AC128706.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0063F24, complete sequence Length = 152738 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 460 tgcttgtgctaccgtcaaaataagagctccagttaataagaaaatatccatgaacatgaa 519 |||||||||| | |||| |||||| |||||||| ||||| || | ||||||||||||||| Sbjct: 109014 tgcttgtgctcctgtcagaataagcgctccagtcaataaaaagacatccatgaacatgaa 108955 Query: 520 cagtacagcaccaggatgttttgtcaccatgaagtgagtccacgactcagaagatgacaa 579 |||||||||||||||||| |||| || |||||||| | |||| |||||||||||||| | Sbjct: 108954 cagtacagcaccaggatggtttgacagcatgaagttaatccatgactcagaagatgagag 108895 Query: 580 tataatgggctcggtccaaagtc 602 |||||||||||| |||||||||| Sbjct: 108894 tataatgggctctgtccaaagtc 108872 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 272 actgtctgttgaagggttggccatgcagcctcctcgtcgttgttgtagccattaacaaga 331 ||||| |||||||| ||||||||||||||||||||||| || |||| ||||| |||||| Sbjct: 109646 actgtttgttgaagcgttggccatgcagcctcctcgtcattactgtatccatttacaaga 109587 Query: 332 aaatagccgcagttcttctgccagtcttggttataaggattcctgaagcgtccatcaggc 391 |||| |||||||| || | || || | | |||||||||||||||||||| |||||| Sbjct: 109586 aaatcagcgcagttcctccggcatcctcgactgtaaggattcctgaagcgtccgtcaggc 109527 Query: 392 ccacgaagataagtgtagcgcgactgatttgcggcctcgttagttgtgagatt 444 || |||||||| | ||||| ||||| ||||| || || |||||||||||||| Sbjct: 109526 ccccgaagatatgcatagcgtgactggtttgctgcttcattagttgtgagatt 109474
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 460 tgcttgtgctaccgtcaaaataagagctccagttaataagaaaatatccatgaacatgaa 519 |||||||||| | |||| |||||| |||||||| ||||| || | ||||||||||||||| Sbjct: 6190 tgcttgtgctcctgtcagaataagcgctccagtcaataaaaagacatccatgaacatgaa 6131 Query: 520 cagtacagcaccaggatgttttgtcaccatgaagtgagtccacgactcagaagatgacaa 579 |||||||||||||||||| |||| || |||||||| | |||| |||||||||||||| | Sbjct: 6130 cagtacagcaccaggatggtttgacagcatgaagttaatccatgactcagaagatgagag 6071 Query: 580 tataatgggctcggtccaaagtc 602 |||||||||||| |||||||||| Sbjct: 6070 tataatgggctctgtccaaagtc 6048 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 272 actgtctgttgaagggttggccatgcagcctcctcgtcgttgttgtagccattaacaaga 331 ||||| |||||||| ||||||||||||||||||||||| || |||| ||||| |||||| Sbjct: 6822 actgtttgttgaagcgttggccatgcagcctcctcgtcattactgtatccatttacaaga 6763 Query: 332 aaatagccgcagttcttctgccagtcttggttataaggattcctgaagcgtccatcaggc 391 |||| |||||||| || | || || | | |||||||||||||||||||| |||||| Sbjct: 6762 aaatcagcgcagttcctccggcatcctcgactgtaaggattcctgaagcgtccgtcaggc 6703 Query: 392 ccacgaagataagtgtagcgcgactgatttgcggcctcgttagttgtgagatt 444 || |||||||| | ||||| ||||| ||||| || || |||||||||||||| Sbjct: 6702 ccccgaagatatgcatagcgtgactggtttgctgcttcattagttgtgagatt 6650
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 460 tgcttgtgctaccgtcaaaataagagctccagttaataagaaaatatccatgaacatgaa 519 |||||||||| | |||| |||||| |||||||| ||||| || | ||||||||||||||| Sbjct: 19601039 tgcttgtgctcctgtcagaataagcgctccagtcaataaaaagacatccatgaacatgaa 19600980 Query: 520 cagtacagcaccaggatgttttgtcaccatgaagtgagtccacgactcagaagatgacaa 579 |||||||||||||||||| |||| || |||||||| | |||| |||||||||||||| | Sbjct: 19600979 cagtacagcaccaggatggtttgacagcatgaagttaatccatgactcagaagatgagag 19600920 Query: 580 tataatgggctcggtccaaagtc 602 |||||||||||| |||||||||| Sbjct: 19600919 tataatgggctctgtccaaagtc 19600897 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 272 actgtctgttgaagggttggccatgcagcctcctcgtcgttgttgtagccattaacaaga 331 ||||| |||||||| ||||||||||||||||||||||| || |||| ||||| |||||| Sbjct: 19601671 actgtttgttgaagcgttggccatgcagcctcctcgtcattactgtatccatttacaaga 19601612 Query: 332 aaatagccgcagttcttctgccagtcttggttataaggattcctgaagcgtccatcaggc 391 |||| |||||||| || | || || | | |||||||||||||||||||| |||||| Sbjct: 19601611 aaatcagcgcagttcctccggcatcctcgactgtaaggattcctgaagcgtccgtcaggc 19601552 Query: 392 ccacgaagataagtgtagcgcgactgatttgcggcctcgttagttgtgagatt 444 || |||||||| | ||||| ||||| ||||| || || |||||||||||||| Sbjct: 19601551 ccccgaagatatgcatagcgtgactggtttgctgcttcattagttgtgagatt 19601499
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 460 tgcttgtgctaccgtcaaaataagagctccagttaataagaaaatatccatgaacatgaa 519 |||||||||| | |||| |||||| |||||||| ||||| || | ||||||||||||||| Sbjct: 19886553 tgcttgtgctcctgtcagaataagcgctccagtcaataaaaagacatccatgaacatgaa 19886494 Query: 520 cagtacagcaccaggatgttttgtcaccatgaagtgagtccacgactcagaagatgacaa 579 |||||||||||||||||| |||| || |||||||| | |||| |||||||||||||| | Sbjct: 19886493 cagtacagcaccaggatggtttgacagcatgaagttaatccatgactcagaagatgagag 19886434 Query: 580 tataatgggctcggtccaaagtc 602 |||||||||||| |||||||||| Sbjct: 19886433 tataatgggctctgtccaaagtc 19886411 Score = 113 bits (57), Expect = 7e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 272 actgtctgttgaagggttggccatgcagcctcctcgtcgttgttgtagccattaacaaga 331 ||||| |||||||| ||||||||||||||||||||||| || |||| ||||| |||||| Sbjct: 19887185 actgtttgttgaagcgttggccatgcagcctcctcgtcattactgtatccatttacaaga 19887126 Query: 332 aaatagccgcagttcttctgccagtcttggttataaggattcctgaagcgtccatcaggc 391 |||| |||||||| || | || || | | |||||||||||||||||||| |||||| Sbjct: 19887125 aaatcagcgcagttcctccggcatcctcgactgtaaggattcctgaagcgtccgtcaggc 19887066 Query: 392 ccacgaagataagtgtagcgcgactgatttgcggcctcgttagttgtgagatt 444 || |||||||| | ||||| ||||| ||||| || || |||||||||||||| Sbjct: 19887065 ccccgaagatatgcatagcgtgactggtttgctgcttcattagttgtgagatt 19887013
>emb|AL591896.6| Human DNA sequence from clone RP11-422P22 on chromosome 1 Contains a gene for a novel protein containing Kelch motif and a putative novel gene, complete sequence Length = 117320 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 gttcttctgccagtcttggtta 364 |||||||||||||||||||||| Sbjct: 108223 gttcttctgccagtcttggtta 108202
>gb|AC162466.6| Mus musculus 6 BAC RP23-196O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186817 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 aaatatgcatgttggtactta 125 ||||||||||||||||||||| Sbjct: 64628 aaatatgcatgttggtactta 64648
>gb|AC153596.5| Mus musculus 6 BAC RP23-305C1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 148062 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 aaatatgcatgttggtactta 125 ||||||||||||||||||||| Sbjct: 14951 aaatatgcatgttggtactta 14931
>gb|AY743959.1| Leuconostoc mesenteroides strain L0309 dextransucrase (dsrX) gene, complete cds Length = 4569 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 taaatagggatggatagagt 81 |||||||||||||||||||| Sbjct: 3259 taaatagggatggatagagt 3240
>gb|AC146059.4| Pan troglodytes BAC clone RP43-14K1 from 7, complete sequence Length = 210466 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 taacaagaaaatagccgcag 343 |||||||||||||||||||| Sbjct: 178790 taacaagaaaatagccgcag 178771
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ataatgggctcggtccaaag 600 |||||||||||||||||||| Sbjct: 19758493 ataatgggctcggtccaaag 19758512
>ref|XM_649264.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (55.t00029) partial mRNA Length = 1518 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 ataagaaaatatccatgaac 514 |||||||||||||||||||| Sbjct: 597 ataagaaaatatccatgaac 578
>gb|AC002461.2| Homo sapiens BAC clone CTA-204I16 from 7, complete sequence Length = 197273 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 taacaagaaaatagccgcag 343 |||||||||||||||||||| Sbjct: 128434 taacaagaaaatagccgcag 128453
>gb|AY266303.2| Bacteriophage Aeh1, complete genome Length = 233234 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tatgcatgttggtacttact 127 |||||||||||||||||||| Sbjct: 11200 tatgcatgttggtacttact 11181
>gb|AC084831.6| Oryza sativa chromosome 3 BAC OSJNBa0077G22 genomic sequence, complete sequence Length = 167288 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 ataatgggctcggtccaaag 600 |||||||||||||||||||| Sbjct: 56323 ataatgggctcggtccaaag 56304
>gb|AY017384.1| Leuconostoc mesenteroides dextransucrase DsrD (dsrD) gene, complete cds Length = 5223 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 taaatagggatggatagagt 81 |||||||||||||||||||| Sbjct: 3772 taaatagggatggatagagt 3753
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ataatgggctcggtccaaag 600 |||||||||||||||||||| Sbjct: 19751520 ataatgggctcggtccaaag 19751539
>gb|AC161615.4| Pan troglodytes BAC clone CH251-549K12 from chromosome 7, complete sequence Length = 193692 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 taacaagaaaatagccgcag 343 |||||||||||||||||||| Sbjct: 60427 taacaagaaaatagccgcag 60408
>gb|AC159131.2| Pan troglodytes BAC clone CH251-316K21 from chromosome unknown, complete sequence Length = 167507 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 taacaagaaaatagccgcag 343 |||||||||||||||||||| Sbjct: 159910 taacaagaaaatagccgcag 159891
>gb|AC084582.1|CBRG40M04 Caenorhabditis briggsae cosmid G40M04, complete sequence Length = 42307 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 acgactcagaagatgacaat 580 |||||||||||||||||||| Sbjct: 17524 acgactcagaagatgacaat 17543
>gb|DQ345760.1| Leuconostoc mesenteroides dextransucrase (dexYG) gene, complete cds Length = 4584 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 taaatagggatggatagagt 81 |||||||||||||||||||| Sbjct: 3274 taaatagggatggatagagt 3255
>emb|CR786562.6| Zebrafish DNA sequence from clone CH211-244H7 in linkage group 18, complete sequence Length = 144824 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gaaccatagcttcactctac 273 |||||||||||||||||||| Sbjct: 69684 gaaccatagcttcactctac 69703
>emb|BX927076.9| Zebrafish DNA sequence from clone CH211-241L24 in linkage group 18, complete sequence Length = 152951 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gaaccatagcttcactctac 273 |||||||||||||||||||| Sbjct: 75284 gaaccatagcttcactctac 75265
>gb|U81374.1|LMU81374 Leuconostoc mesenteroides dextransucrase (DEX) gene, complete cds Length = 4907 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 taaatagggatggatagagt 81 |||||||||||||||||||| Sbjct: 3502 taaatagggatggatagagt 3483
>dbj|AP003117.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1958F4 Length = 152176 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cccatttctacacttgcaca 234 |||||||||||||||||||| Sbjct: 73463 cccatttctacacttgcaca 73444
>dbj|AP003111.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1255G1 Length = 171035 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cccatttctacacttgcaca 234 |||||||||||||||||||| Sbjct: 170129 cccatttctacacttgcaca 170110
>emb|AL627227.20| Mouse DNA sequence from clone RP23-242O20 on chromosome 4, complete sequence Length = 48839 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 agctccagttaataagaaaa 503 |||||||||||||||||||| Sbjct: 25090 agctccagttaataagaaaa 25109 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,402,680 Number of Sequences: 3902068 Number of extensions: 5402680 Number of successful extensions: 133651 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133464 Number of HSP's gapped (non-prelim): 186 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)