ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a) 29 3.5
2SIAT1_RAT (P13721) CMP-N-acetylneuraminate-beta-galactosamide-al... 28 7.8

>SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a)|
          Length = 611

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 285 RVLQRHIGTGKEPDVAAWRISYNDRPNAELILESKRAADLVIRSV 151
           R+L   +G+ K  D  AW+I   DR   +++ +S + AD+  + +
Sbjct: 28  RLLHEMLGSTKTGDSKAWKILIMDRVTVKVMSQSCKMADITDQGI 72



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>SIAT1_RAT (P13721) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,|
           6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside
           alpha-2,6-sialyltransferase) (Alpha 2,6-ST)
           (Sialyltransferase 1) (ST6Gal I)
          Length = 403

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 67  YVQTSPSGPYYY*KSKLPSETWDL 138
           Y + +PS P+Y  K ++P E WD+
Sbjct: 281 YRRLNPSQPFYILKPQMPWELWDI 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,060,498
Number of Sequences: 219361
Number of extensions: 783762
Number of successful extensions: 1375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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