Clone Name | rbasd1a05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a) | 29 | 3.5 | 2 | SIAT1_RAT (P13721) CMP-N-acetylneuraminate-beta-galactosamide-al... | 28 | 7.8 |
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>SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a)| Length = 611 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = -3 Query: 285 RVLQRHIGTGKEPDVAAWRISYNDRPNAELILESKRAADLVIRSV 151 R+L +G+ K D AW+I DR +++ +S + AD+ + + Sbjct: 28 RLLHEMLGSTKTGDSKAWKILIMDRVTVKVMSQSCKMADITDQGI 72
>SIAT1_RAT (P13721) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,| 6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2,6-sialyltransferase) (Alpha 2,6-ST) (Sialyltransferase 1) (ST6Gal I) Length = 403 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 67 YVQTSPSGPYYY*KSKLPSETWDL 138 Y + +PS P+Y K ++P E WD+ Sbjct: 281 YRRLNPSQPFYILKPQMPWELWDI 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,060,498 Number of Sequences: 219361 Number of extensions: 783762 Number of successful extensions: 1375 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1375 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)