ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 4e-37
2dbj|AK059928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 4e-37
3gb|BT019127.1| Zea mays clone Contig742.F mRNA sequence 119 5e-24
4gb|AY107071.1| Zea mays PCO084702 mRNA sequence 119 5e-24
5gb|BT023989.1| Zea mays clone EL01N0413B12 mRNA sequence 111 1e-21
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 80 4e-12
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 80 4e-12
8emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb... 80 4e-12
9gb|AE017245.1| Mycoplasma synoviae 53, complete genome 42 0.96
10emb|AJ276675.1|SAV276675 Stagonospora avenae bgl1 gene for beta-... 42 0.96
11gb|AC166288.7| Mus musculus chromosome 3, clone RP23-464M10, com... 40 3.8
12gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 3.8
13emb|AL157937.21| Human DNA sequence from clone RP11-408N14 on ch... 40 3.8
14emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20... 40 3.8
15dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 3.8
16gb|AC022471.8|AC022471 Genomic Sequence For Homo sapiens Clone 2... 40 3.8
17dbj|AB006701.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.8
18gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, comple... 40 3.8 
>dbj|AK073304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026B21, full
            insert sequence
          Length = 1693

 Score =  163 bits (82), Expect = 4e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                        
Query: 149  tccaccgatctgattacaagatctgcagccctttttgactccaagataagctcagcattc 208
            |||||||||||||||||||||||||||| | ||||||||| || ||||||||| || || 
Sbjct: 1483 tccaccgatctgattacaagatctgcagacttttttgacttcatgataagctctgcgttt 1424

                                                                        
Query: 209  ggccggtcgttgtatgaaatccgccatgctgctacatctggctctttccctgtgccaata 268
            |||||||| || || || ||||||||||||||||||||||||||||| |||||| | | |
Sbjct: 1423 ggccggtcattatacgagatccgccatgctgctacatctggctcttttcctgtggcgaca 1364

                                  
Query: 269  tgtctctggagcactctttgca 290
            ||||||||||||||||||||||
Sbjct: 1363 tgtctctggagcactctttgca 1342
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>dbj|AK059928.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A06, full
            insert sequence
          Length = 1256

 Score =  163 bits (82), Expect = 4e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                        
Query: 149  tccaccgatctgattacaagatctgcagccctttttgactccaagataagctcagcattc 208
            |||||||||||||||||||||||||||| | ||||||||| || ||||||||| || || 
Sbjct: 1043 tccaccgatctgattacaagatctgcagacttttttgacttcatgataagctctgcgttt 984

                                                                        
Query: 209  ggccggtcgttgtatgaaatccgccatgctgctacatctggctctttccctgtgccaata 268
            |||||||| || || || ||||||||||||||||||||||||||||| |||||| | | |
Sbjct: 983  ggccggtcattatacgagatccgccatgctgctacatctggctcttttcctgtggcgaca 924

                                  
Query: 269  tgtctctggagcactctttgca 290
            ||||||||||||||||||||||
Sbjct: 923  tgtctctggagcactctttgca 902
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>gb|BT019127.1| Zea mays clone Contig742.F mRNA sequence
          Length = 505

 Score =  119 bits (60), Expect = 5e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                       
Query: 183 ttgactccaagataagctcagcattcggccggtcgttgtatgaaatccgccatgctgcta 242
           |||| |||| ||||||||| |||||||| ||||||||||| || |||| |||||||||||
Sbjct: 210 ttgattccaggataagctctgcattcggtcggtcgttgtaggagatcctccatgctgcta 151

                                                           
Query: 243 catctggctctttccctgtgccaatatgtctctggagcactctttgca 290
           ||||||||||||| || ||  |||||||||||| ||||||||||||||
Sbjct: 150 catctggctcttttccggttgcaatatgtctcttgagcactctttgca 103
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>gb|AY107071.1| Zea mays PCO084702 mRNA sequence
          Length = 992

 Score =  119 bits (60), Expect = 5e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                       
Query: 183 ttgactccaagataagctcagcattcggccggtcgttgtatgaaatccgccatgctgcta 242
           |||| |||| ||||||||| |||||||| ||||||||||| || |||| |||||||||||
Sbjct: 706 ttgattccaggataagctctgcattcggtcggtcgttgtaggagatcctccatgctgcta 647

                                                           
Query: 243 catctggctctttccctgtgccaatatgtctctggagcactctttgca 290
           ||||||||||||| || ||  |||||||||||| ||||||||||||||
Sbjct: 646 catctggctcttttccggttgcaatatgtctcttgagcactctttgca 599
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>gb|BT023989.1| Zea mays clone EL01N0413B12 mRNA sequence
          Length = 1299

 Score =  111 bits (56), Expect = 1e-21
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 183  ttgactccaagataagctcagcattcggccggtcgttgtatgaaatccgccatgctgcta 242
            |||| |||| ||||||||| |||||||| ||||||||||| || |||| |||||||||||
Sbjct: 1026 ttgattccaggataagctctgcattcggtcggtcgttgtaggagatcctccatgctgcta 967

                                                            
Query: 243  catctggctctttccctgtgccaatatgtctctggagcactctttgca 290
            ||||||||||||| || |   |||||||||||| ||||||||||||||
Sbjct: 966  catctggctcttttccgggtgcaatatgtctcttgagcactctttgca 919
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 149      tccaccgatctgattacaagatctgcagccctttttgactccaagataagctcagcattc 208
                |||||||||||||||||||||||||||| | ||||||||| || ||||||||| || || 
Sbjct: 25343116 tccaccgatctgattacaagatctgcagacttttttgacttcatgataagctctgcgttt 25343057

                        
Query: 209      ggccggtc 216
                ||||||||
Sbjct: 25343056 ggccggtc 25343049



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 229      ccgccatgctgctacatctggctctttccctg 260
                ||||||||||||||||||||||||||| ||||
Sbjct: 25342704 ccgccatgctgctacatctggctcttttcctg 25342673



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 268      atgtctctggagcactctttgca 290
                |||||||||||||||||||||||
Sbjct: 25342573 atgtctctggagcactctttgca 25342551
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 149      tccaccgatctgattacaagatctgcagccctttttgactccaagataagctcagcattc 208
                |||||||||||||||||||||||||||| | ||||||||| || ||||||||| || || 
Sbjct: 25271292 tccaccgatctgattacaagatctgcagacttttttgacttcatgataagctctgcgttt 25271233

                        
Query: 209      ggccggtc 216
                ||||||||
Sbjct: 25271232 ggccggtc 25271225



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 229      ccgccatgctgctacatctggctctttccctg 260
                ||||||||||||||||||||||||||| ||||
Sbjct: 25270880 ccgccatgctgctacatctggctcttttcctg 25270849



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 268      atgtctctggagcactctttgca 290
                |||||||||||||||||||||||
Sbjct: 25270749 atgtctctggagcactctttgca 25270727
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>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 152914

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 149  tccaccgatctgattacaagatctgcagccctttttgactccaagataagctcagcattc 208
            |||||||||||||||||||||||||||| | ||||||||| || ||||||||| || || 
Sbjct: 9926 tccaccgatctgattacaagatctgcagacttttttgacttcatgataagctctgcgttt 9867

                    
Query: 209  ggccggtc 216
            ||||||||
Sbjct: 9866 ggccggtc 9859



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 229  ccgccatgctgctacatctggctctttccctg 260
            ||||||||||||||||||||||||||| ||||
Sbjct: 9514 ccgccatgctgctacatctggctcttttcctg 9483



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 268  atgtctctggagcactctttgca 290
            |||||||||||||||||||||||
Sbjct: 9383 atgtctctggagcactctttgca 9361
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>gb|AE017245.1| Mycoplasma synoviae 53, complete genome
          Length = 799476

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 98     attactaaaaatcaaaattgc 118
              |||||||||||||||||||||
Sbjct: 544860 attactaaaaatcaaaattgc 544880
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>emb|AJ276675.1|SAV276675 Stagonospora avenae bgl1 gene for beta-glucosidase, exons 1-4
          Length = 6440

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 172  tgcagccctttttgactccaa 192
            |||||||||||||||||||||
Sbjct: 1082 tgcagccctttttgactccaa 1062
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>gb|AC166288.7| Mus musculus chromosome 3, clone RP23-464M10, complete sequence
          Length = 183724

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tattattactaaaaatcaaa 113
              ||||||||||||||||||||
Sbjct: 108272 tattattactaaaaatcaaa 108291
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    ccatcagaaacatgggatct 137
              ||||||||||||||||||||
Sbjct: 432469 ccatcagaaacatgggatct 432488
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>emb|AL157937.21| Human DNA sequence from clone RP11-408N14 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 153783

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cctattattactaaaaatca 111
             ||||||||||||||||||||
Sbjct: 78573 cctattattactaaaaatca 78592
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>emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20 on chromosome Xq22.2-22.3,
            complete sequence
          Length = 167943

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   attattactaaaaatcaaaa 114
            ||||||||||||||||||||
Sbjct: 6867 attattactaaaaatcaaaa 6848
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ccatcagaaacatgggatct 137
              ||||||||||||||||||||
Sbjct: 763043 ccatcagaaacatgggatct 763024
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>gb|AC022471.8|AC022471 Genomic Sequence For Homo sapiens Clone 202M16 From Chromosome VI,
             complete sequence
          Length = 92144

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cctattattactaaaaatca 111
             ||||||||||||||||||||
Sbjct: 58380 cctattattactaaaaatca 58399
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>dbj|AB006701.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP9
          Length = 84194

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tattattactaaaaatcaaa 113
             ||||||||||||||||||||
Sbjct: 80312 tattattactaaaaatcaaa 80331
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>gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, complete sequence
          Length = 203003

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     ctgacttcttctatgtacaa 75
              ||||||||||||||||||||
Sbjct: 112201 ctgacttcttctatgtacaa 112182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,343,004
Number of Sequences: 3902068
Number of extensions: 2343004
Number of successful extensions: 43908
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43836
Number of HSP's gapped (non-prelim): 71
length of query: 290
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 268
effective length of database: 17,147,199,772
effective search space: 4595449538896
effective search space used: 4595449538896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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