ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase ... 246 6e-75
2PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6... 44 3e-04
3PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 31 2.2
4RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigment... 30 3.8

>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score =  246 bits (628), Expect(2) = 6e-75
 Identities = 114/114 (100%), Positives = 114/114 (100%)
 Frame = -1

Query: 505 HVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHD 326
           HVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHD
Sbjct: 255 HVHNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHD 314

Query: 325 YGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 164
           YGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS
Sbjct: 315 YGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 368



 Score = 54.7 bits (130), Expect(2) = 6e-75
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 578 EEPEGRESLQKLWQRYRVDIAYFG 507
           EEPEGRESLQKLWQRYRVDIAYFG
Sbjct: 231 EEPEGRESLQKLWQRYRVDIAYFG 254



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>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid|
           phosphatase) (APase6)
          Length = 614

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
 Frame = -1

Query: 505 HVHNYERTCPLYQSQCVNA-----DKTHYSGTMNGTIFVVAGGGG-----SHLSSYTTAI 356
           H+H YER  PL  +  ++      + T+Y+        ++ G  G     S  S      
Sbjct: 499 HIHWYERLYPLGANGTIDTAAIVNNNTYYAHNGKSITHIINGMAGNIESHSEFSDGEGLT 558

Query: 355 PKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTI 230
              ++     YGF+KLT FN ++L +E ++  DG V DS T+
Sbjct: 559 NITALLDKVHYGFSKLTIFNETALKWELIRGDDGTVGDSLTL 600



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>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
 Frame = -1

Query: 505 HVHNYERTCPLYQSQCVNADKTHYSGTM------NGTIFVVAGGGGSHLSSYTTAI---P 353
           HVH YER+      +  N      +G        +  I++  G GG+     T  +   P
Sbjct: 356 HVHAYERS-----ERVSNIAYNIVNGLCEPISDESAPIYITIGDGGNSEGLLTDMMQPQP 410

Query: 352 KWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 254
           K+S FR+  +G   L   N +   F + ++ DG
Sbjct: 411 KYSAFREASFGHGLLEIKNRTHAYFSWNRNQDG 443



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>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2095

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
 Frame = -1

Query: 493  YERTCPLYQ--SQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYG 320
            + ++ PL Q  S  VN ++  + G    T      G     +   T    WS   + + G
Sbjct: 914  HRKSGPLCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSKTKNDNWSGNTNQETG 973

Query: 319  FTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS*LISSGRH 140
             + +   N   L   + +S +G +YDS+         L  +HD+C  +       S+  H
Sbjct: 974  KSLVAKDNGEELNKHHCESQNGSLYDSY---------LVSLHDNCTLSQTTINEPSTKSH 1024

Query: 139  VNVMEGHPSNKIV 101
            +++ +  P  K+V
Sbjct: 1025 LSIEKSRPEVKLV 1037


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,649,574
Number of Sequences: 219361
Number of extensions: 1286980
Number of successful extensions: 3247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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