ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEE9_SCHPO (O13825) Hypothetical protein C19A8.09 in chromosome I 53 6e-07
2YOS1_YEAST (Q3E834) Protein YOS1 (YIP one suppressor protein 1) 42 0.001
3BOI2_YEAST (P39969) Protein BOI2 (Protein BEB1) 29 8.7
4ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing prote... 29 8.7

>YEE9_SCHPO (O13825) Hypothetical protein C19A8.09 in chromosome I|
          Length = 81

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = -3

Query: 456 NSLAILNEDRFLGPRGWSMSEVSGNGQTK-SLKGQIVGLIYATQ-FLRMPLIALNVLIIV 283
           N++AIL+EDRFLG  GWS S   G G  + ++K +I+ LI A +  +  PLIA+N ++IV
Sbjct: 16  NAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVMTFPLIAINTIVIV 75

Query: 282 VKMVSG 265
             +V G
Sbjct: 76  YNLVLG 81



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>YOS1_YEAST (Q3E834) Protein YOS1 (YIP one suppressor protein 1)|
          Length = 85

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
 Frame = -3

Query: 456 NSLAILNEDRFLGPRGWSMSE----VSGNGQTKSLKGQIVGLIYATQ-FLRMPLIALNVL 292
           N++A+L+E+RFL   G   S     V G  Q  + K ++V LI A Q  LR+PLI +N+L
Sbjct: 18  NAVAVLSEERFLRRIGLGRSNDETPVFGQDQNTT-KSKVVQLIGAVQTLLRIPLIGINIL 76

Query: 291 IIVVKMVSG 265
           +IV +++ G
Sbjct: 77  VIVYELLLG 85



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>BOI2_YEAST (P39969) Protein BOI2 (Protein BEB1)|
          Length = 1040

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = +1

Query: 205 HNAGN*NQINPTAETRERASA*HHFHNNDKNIKRYQGHPQKLSGIDEPHDLPLQRLCLPI 384
           +NA   NQ+ P A   +RAS              Y+GH +K S      DLP Q+  +P 
Sbjct: 345 NNANIYNQLMPPANVDQRAS--------------YRGHVRKTS--QSLEDLPSQQNFIPT 388

Query: 385 S*NFRHAPSPGTKKAVFIQDSQ 450
             N R++ +   +    + DSQ
Sbjct: 389 PRNTRNSSASKHRPKSLVFDSQ 410



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>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4|
           (KAISO-like zinc finger protein 1) (KAISO-L1)
          Length = 1013

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 451 RICKKQKTLQQHPQAHLSDRPRGVP 525
           ++CK    L +H Q H ++RP G P
Sbjct: 772 KVCKTAAALSRHGQRHAAERPGGTP 796


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,304,475
Number of Sequences: 219361
Number of extensions: 1819401
Number of successful extensions: 5045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5040
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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