ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 202 8e-49
2dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic D... 202 8e-49
3dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 8e-49
4gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence 188 1e-44
5gb|AY105159.1| Zea mays PCO075778 mRNA sequence 188 1e-44
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
7dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
8dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
9gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, comp... 46 0.11
10dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.7
11gb|BC068332.1| Danio rerio zgc:85626, mRNA (cDNA clone MGC:85626... 40 6.8
12ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.8
13gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete se... 40 6.8
14emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 40 6.8
15emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in... 40 6.8
16gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotea... 40 6.8
17ref|XM_681635.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 6.8
18ref|XM_703423.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 6.8
19ref|XM_681286.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 6.8
20ref|XM_703300.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 6.8
21ref|NM_213321.1| Danio rerio zgc:85626 (zgc:85626), mRNA 40 6.8
22gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, compl... 40 6.8
23emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 40 6.8
24gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.8
25emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 ... 40 6.8 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  202 bits (102), Expect = 8e-49
 Identities = 220/258 (85%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                           
Query: 233     ttgagaaatcttgccgggctgaagggcgcaagatcaacgatcttggcctgcccatcgagg 292
               |||||||| ||||| |||||||| ||||| ||||| ||||||||||| |  || ||||||
Sbjct: 2978646 ttgagaaaccttgctgggctgaacggcgcgagatcgacgatcttggcatcgccgtcgagg 2978587

                                                                           
Query: 293     atgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagctgtgc 352
               |||||||| ||||| || ||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 2978586 atgagctctgcgagagcggcaccggtggctggagcattgaggatcccccagcagctgtgc 2978527

                                                                           
Query: 353     ccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagcccgtca 412
               ||||| || || ||||| |||||||| || ||||| ||||| || |||||||  ||||||
Sbjct: 2978526 ccggtggcgacatagcaacccttcactccaggcatctccccgatcaccggcaaaccgtca 2978467

                                                                           
Query: 413     tcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctgtctt 472
               ||||||||| || |||||||| ||||| ||||| || ||||| ||||| |||||  ||||
Sbjct: 2978466 tcggtgcac-ggcaggtagcaagcctgctccgccaccacctccgcgccttcctccctctt 2978408

                                 
Query: 473     gagctggctggacaccct 490
                ||||||| ||| |||||
Sbjct: 2978407 cagctggccggaaaccct 2978390
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>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0024L18
          Length = 150128

 Score =  202 bits (102), Expect = 8e-49
 Identities = 220/258 (85%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                         
Query: 233   ttgagaaatcttgccgggctgaagggcgcaagatcaacgatcttggcctgcccatcgagg 292
             |||||||| ||||| |||||||| ||||| ||||| ||||||||||| |  || ||||||
Sbjct: 24701 ttgagaaaccttgctgggctgaacggcgcgagatcgacgatcttggcatcgccgtcgagg 24642

                                                                         
Query: 293   atgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagctgtgc 352
             |||||||| ||||| || ||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 24641 atgagctctgcgagagcggcaccggtggctggagcattgaggatcccccagcagctgtgc 24582

                                                                         
Query: 353   ccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagcccgtca 412
             ||||| || || ||||| |||||||| || ||||| ||||| || |||||||  ||||||
Sbjct: 24581 ccggtggcgacatagcaacccttcactccaggcatctccccgatcaccggcaaaccgtca 24522

                                                                         
Query: 413   tcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctgtctt 472
             ||||||||| || |||||||| ||||| ||||| || ||||| ||||| |||||  ||||
Sbjct: 24521 tcggtgcac-ggcaggtagcaagcctgctccgccaccacctccgcgccttcctccctctt 24463

                               
Query: 473   gagctggctggacaccct 490
              ||||||| ||| |||||
Sbjct: 24462 cagctggccggaaaccct 24445
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>dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full
            insert sequence
          Length = 1364

 Score =  202 bits (102), Expect = 8e-49
 Identities = 220/258 (85%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                        
Query: 233  ttgagaaatcttgccgggctgaagggcgcaagatcaacgatcttggcctgcccatcgagg 292
            |||||||| ||||| |||||||| ||||| ||||| ||||||||||| |  || ||||||
Sbjct: 1175 ttgagaaaccttgctgggctgaacggcgcgagatcgacgatcttggcatcgccgtcgagg 1116

                                                                        
Query: 293  atgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagctgtgc 352
            |||||||| ||||| || ||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 1115 atgagctctgcgagagcggcaccggtggctggagcattgaggatcccccagcagctgtgc 1056

                                                                        
Query: 353  ccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagcccgtca 412
            ||||| || || ||||| |||||||| || ||||| ||||| || |||||||  ||||||
Sbjct: 1055 ccggtggcgacatagcaacccttcactccaggcatctccccgatcaccggcaaaccgtca 996

                                                                        
Query: 413  tcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctgtctt 472
            ||||||||| || |||||||| ||||| ||||| || ||||| ||||| |||||  ||||
Sbjct: 995  tcggtgcac-ggcaggtagcaagcctgctccgccaccacctccgcgccttcctccctctt 937

                              
Query: 473  gagctggctggacaccct 490
             ||||||| ||| |||||
Sbjct: 936  cagctggccggaaaccct 919
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>gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence
          Length = 711

 Score =  188 bits (95), Expect = 1e-44
 Identities = 216/255 (84%), Gaps = 1/255 (0%)
 Strand = Plus / Minus

                                                                       
Query: 233 ttgagaaatcttgccgggctgaagggcgcaagatcaacgatcttggcctgcccatcgagg 292
           |||||||| |||||||||||||| ||| | |||||||||||||||| ||  || || |||
Sbjct: 652 ttgagaaaccttgccgggctgaaaggctcgagatcaacgatcttggacttgccgtccagg 593

                                                                       
Query: 293 atgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagctgtgc 352
           |||||||||||||| ||||| |||||  | ||| |||||||||| |||||||||||||| 
Sbjct: 592 atgagctcggcgagggctgcgccggtggccggaccattgaggataccccagcagctgtgg 533

                                                                       
Query: 353 ccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagcccgtca 412
           || || || || ||||| || ||||| || || || ||||| ||||||||||||||||| 
Sbjct: 532 cccgtggccacatagcaccctttcacgcctggtatctccccgatgaccggcagcccgtcg 473

                                                                       
Query: 413 tcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctgtctt 472
            |||||||| || |||||||| ||||| |||||||| ||||| |||||||||||  ||||
Sbjct: 472 gcggtgcac-ggcaggtagcacgcctgctccgcgaccacctcagcgccctcctccttctt 414

                          
Query: 473 gagctggctggacac 487
            ||||||||||||||
Sbjct: 413 cagctggctggacac 399
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>gb|AY105159.1| Zea mays PCO075778 mRNA sequence
          Length = 604

 Score =  188 bits (95), Expect = 1e-44
 Identities = 216/255 (84%), Gaps = 1/255 (0%)
 Strand = Plus / Plus

                                                                       
Query: 233 ttgagaaatcttgccgggctgaagggcgcaagatcaacgatcttggcctgcccatcgagg 292
           |||||||| |||||||||||||| ||| | |||||||||||||||| ||  || || |||
Sbjct: 182 ttgagaaaccttgccgggctgaaaggctcgagatcaacgatcttggacttgccgtccagg 241

                                                                       
Query: 293 atgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagctgtgc 352
           |||||||||||||| ||||| |||||  | ||| |||||||||| |||||||||||||| 
Sbjct: 242 atgagctcggcgagggctgcgccggtggccggaccattgaggataccccagcagctgtgg 301

                                                                       
Query: 353 ccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagcccgtca 412
           || || || || ||||| || ||||| || || || ||||| ||||||||||||||||| 
Sbjct: 302 cccgtggccacatagcaccctttcacgcctggtatctccccgatgaccggcagcccgtcg 361

                                                                       
Query: 413 tcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctgtctt 472
            |||||||| || |||||||| ||||| |||||||| ||||| |||||||||||  ||||
Sbjct: 362 gcggtgcac-ggcaggtagcacgcctgctccgcgaccacctcagcgccctcctccttctt 420

                          
Query: 473 gagctggctggacac 487
            ||||||||||||||
Sbjct: 421 cagctggctggacac 435
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  115 bits (58), Expect = 1e-22
 Identities = 167/202 (82%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                            
Query: 289      gaggatgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagct 348
                |||||||||||| ||||| || || |||||  | ||||| |||||||| ||||| | || 
Sbjct: 23298054 gaggatgagctccgcgagcgcagcgccggtggccggagcgttgaggattccccacccgcc 23298113

                                                                            
Query: 349      gtgcccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagccc 408
                ||||||||| || |||||||| ||||||||||| ||||| || || || ||||||| |||
Sbjct: 23298114 gtgcccggtggcgacgtagcaacccttcaccccaggcatctctccgatcaccggcaaccc 23298173

                                                                            
Query: 409      gtcatcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctg 468
                ||||  ||||||| || | |||||| ||||| ||||| || ||||| ||||| |||||  
Sbjct: 23298174 gtcactggtgcac-ggcatgtagcaagcctgctccgccaccacctccgcgccttcctccc 23298232

                                      
Query: 469      tcttgagctggctggacaccct 490
                |||| |||||||||||||||||
Sbjct: 23298233 tcttcagctggctggacaccct 23298254
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1103C09
          Length = 163996

 Score =  115 bits (58), Expect = 1e-22
 Identities = 167/202 (82%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                         
Query: 289   gaggatgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagct 348
             |||||||||||| ||||| || || |||||  | ||||| |||||||| ||||| | || 
Sbjct: 23752 gaggatgagctccgcgagcgcagcgccggtggccggagcgttgaggattccccacccgcc 23811

                                                                         
Query: 349   gtgcccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagccc 408
             ||||||||| || |||||||| ||||||||||| ||||| || || || ||||||| |||
Sbjct: 23812 gtgcccggtggcgacgtagcaacccttcaccccaggcatctctccgatcaccggcaaccc 23871

                                                                         
Query: 409   gtcatcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctg 468
             ||||  ||||||| || | |||||| ||||| ||||| || ||||| ||||| |||||  
Sbjct: 23872 gtcactggtgcac-ggcatgtagcaagcctgctccgccaccacctccgcgccttcctccc 23930

                                   
Query: 469   tcttgagctggctggacaccct 490
             |||| |||||||||||||||||
Sbjct: 23931 tcttcagctggctggacaccct 23952
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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score =  115 bits (58), Expect = 1e-22
 Identities = 167/202 (82%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                         
Query: 289   gaggatgagctcggcgagtgctgcaccggtaactggagcattgaggatcccccagcagct 348
             |||||||||||| ||||| || || |||||  | ||||| |||||||| ||||| | || 
Sbjct: 84796 gaggatgagctccgcgagcgcagcgccggtggccggagcgttgaggattccccacccgcc 84855

                                                                         
Query: 349   gtgcccggttgcaacgtagcatcccttcaccccgggcatttccccaatgaccggcagccc 408
             ||||||||| || |||||||| ||||||||||| ||||| || || || ||||||| |||
Sbjct: 84856 gtgcccggtggcgacgtagcaacccttcaccccaggcatctctccgatcaccggcaaccc 84915

                                                                         
Query: 409   gtcatcggtgcacggggaggtagcaggcctgttccgcgactacctctgcgccctcctctg 468
             ||||  ||||||| || | |||||| ||||| ||||| || ||||| ||||| |||||  
Sbjct: 84916 gtcactggtgcac-ggcatgtagcaagcctgctccgccaccacctccgcgccttcctccc 84974

                                   
Query: 469   tcttgagctggctggacaccct 490
             |||| |||||||||||||||||
Sbjct: 84975 tcttcagctggctggacaccct 84996
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>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence
          Length = 230293

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 331    gaggatcccccagcagctgtgcc 353
              |||||||||||||||||||||||
Sbjct: 190376 gaggatcccccagcagctgtgcc 190398
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>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete
              sequence
          Length = 175562

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 456    gcgccctcctctgtcttgagc 476
              |||||||||||||||||||||
Sbjct: 118037 gcgccctcctctgtcttgagc 118017
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>gb|BC068332.1| Danio rerio zgc:85626, mRNA (cDNA clone MGC:85626 IMAGE:6525318),
            complete cds
          Length = 1888

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   agtgttgaaggtttatttat 61
            ||||||||||||||||||||
Sbjct: 1565 agtgttgaaggtttatttat 1546
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>ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3584.2), mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 289 gaggatgagctcggcgagtg 308
           ||||||||||||||||||||
Sbjct: 129 gaggatgagctcggcgagtg 148
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>gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete sequence
          Length = 28233

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 338   ccccagcagctgtgcccggttgcaacgtagcatcccttcaccccgggcatttcccc 393
             ||||| ||| ||||||| || ||||| || || |||||||||||||| || |||||
Sbjct: 16855 ccccaacagttgtgcccagtggcaacataacaacccttcaccccgggaatctcccc 16800
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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     agtgttgaaggtttatttat 61
              ||||||||||||||||||||
Sbjct: 153628 agtgttgaaggtttatttat 153647
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>emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in linkage group 5,
             complete sequence
          Length = 168673

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   tcttcttgttgttgagaaat 241
             ||||||||||||||||||||
Sbjct: 22893 tcttcttgttgttgagaaat 22874
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>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene,
            complete cds
          Length = 4688

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  gaggatgagctcggcgagtg 308
            ||||||||||||||||||||
Sbjct: 3889 gaggatgagctcggcgagtg 3908
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>ref|XM_681635.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 1 (LOC573514), mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   agtgttgaaggtttatttat 61
            ||||||||||||||||||||
Sbjct: 1583 agtgttgaaggtttatttat 1564
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>ref|XM_703423.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 2 (LOC573514), mRNA
          Length = 1796

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   agtgttgaaggtttatttat 61
            ||||||||||||||||||||
Sbjct: 1531 agtgttgaaggtttatttat 1512
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>ref|XM_681286.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 1 (LOC573411), mRNA
          Length = 1846

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   agtgttgaaggtttatttat 61
            ||||||||||||||||||||
Sbjct: 1581 agtgttgaaggtttatttat 1562
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>ref|XM_703300.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 2 (LOC573411), mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   agtgttgaaggtttatttat 61
            ||||||||||||||||||||
Sbjct: 1529 agtgttgaaggtttatttat 1510
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>ref|NM_213321.1| Danio rerio zgc:85626 (zgc:85626), mRNA
          Length = 1888

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   agtgttgaaggtttatttat 61
            ||||||||||||||||||||
Sbjct: 1565 agtgttgaaggtttatttat 1546
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>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence
          Length = 158692

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   ttcttgttgttgagaaatct 243
             ||||||||||||||||||||
Sbjct: 68733 ttcttgttgttgagaaatct 68714
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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    agtgttgaaggtttatttat 61
             ||||||||||||||||||||
Sbjct: 37735 agtgttgaaggtttatttat 37716
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>gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OABb-520P24, complete
            sequence
          Length = 142317

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 100  tacattatttgatttggtgtcccc 123
            ||||||||||||||| ||||||||
Sbjct: 3519 tacattatttgattttgtgtcccc 3496
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>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24,
              complete sequence
          Length = 188067

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     agtgttgaaggtttatttat 61
              ||||||||||||||||||||
Sbjct: 112391 agtgttgaaggtttatttat 112372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,634,243
Number of Sequences: 3902068
Number of extensions: 3634243
Number of successful extensions: 65800
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65710
Number of HSP's gapped (non-prelim): 85
length of query: 501
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 479
effective length of database: 17,147,199,772
effective search space: 8213508690788
effective search space used: 8213508690788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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