ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195283.1| Oryza sativa (japonica cultivar-group) hypothet... 96 2e-16
2gb|AC097278.6| Oryza sativa chromosome 10 BAC OSJNBa0040E17 geno... 96 2e-16
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 96 2e-16
5gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosom... 50 0.009
6gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, co... 42 2.2
7emb|BX927377.5| Zebrafish DNA sequence from clone DKEY-5I22 in l... 42 2.2
8gb|AC110194.11| Mus musculus chromosome 7, clone RP23-238J3, com... 40 8.7
9gb|AC137552.11| Medicago truncatula clone mth2-9k5, complete seq... 40 8.7
10gb|AC107926.6| Homo sapiens, clone RP11-381P6, complete sequence 40 8.7
11gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, co... 40 8.7
12gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome ... 40 8.7
13gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, comple... 40 8.7
14gb|BC045104.1| Xenopus laevis, clone IMAGE:5542423, mRNA 40 8.7
15gb|AC157510.1| Dasypus novemcinctus, clone Dasypus novemcinctus-... 40 8.7
16gb|AC140202.3| Mus musculus BAC clone RP24-330O15 from 9, comple... 40 8.7
17gb|AC131734.4| Mus musculus BAC clone RP23-99I11 from 9, complet... 40 8.7
18dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete ge... 40 8.7
19emb|AL928538.5| Mouse DNA sequence from clone RP23-102P12 on chr... 40 8.7 
>ref|NM_195283.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0040E17.29), mRNA
          Length = 1764

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                        
Query: 543  tcatgcatcaatccctggccctgggtatgcagggagactcatgatcccggttgtcaacca 602
            |||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||  |
Sbjct: 1764 tcatgcatcaatccctggtcctgggtatgcaggaagactcatgat-ccgcttgtcaagta 1706

                                                
Query: 603  caggggcgcccaccgtaaaatggtacaagctttgga 638
            |||| || ||||| |||||||| |||| ||||||||
Sbjct: 1705 caggtgcacccactgtaaaatgatacaggctttgga 1670
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>gb|AC097278.6| Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete
              sequence
          Length = 151673

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                          
Query: 543    tcatgcatcaatccctggccctgggtatgcagggagactcatgatcccggttgtcaacca 602
              |||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||  |
Sbjct: 125291 tcatgcatcaatccctggtcctgggtatgcaggaagactcatgat-ccgcttgtcaagta 125349

                                                  
Query: 603    caggggcgcccaccgtaaaatggtacaagctttgga 638
              |||| || ||||| |||||||| |||| ||||||||
Sbjct: 125350 caggtgcacccactgtaaaatgatacaggctttgga 125385
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                           
Query: 543     tcatgcatcaatccctggccctgggtatgcagggagactcatgatcccggttgtcaacca 602
               |||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||  |
Sbjct: 5941022 tcatgcatcaatccctggtcctgggtatgcaggaagactcatgat-ccgcttgtcaagta 5940964

                                                   
Query: 603     caggggcgcccaccgtaaaatggtacaagctttgga 638
               |||| || ||||| |||||||| |||| ||||||||
Sbjct: 5940963 caggtgcacccactgtaaaatgatacaggctttgga 5940928
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                           
Query: 543     tcatgcatcaatccctggccctgggtatgcagggagactcatgatcccggttgtcaacca 602
               |||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||  |
Sbjct: 5942208 tcatgcatcaatccctggtcctgggtatgcaggaagactcatgat-ccgcttgtcaagta 5942150

                                                   
Query: 603     caggggcgcccaccgtaaaatggtacaagctttgga 638
               |||| || ||||| |||||||| |||| ||||||||
Sbjct: 5942149 caggtgcacccactgtaaaatgatacaggctttgga 5942114
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>gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosome 16, complete sequence
          Length = 183268

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 93     taaacattacacttctatgaatatc 117
              |||||||||||||||||||||||||
Sbjct: 109399 taaacattacacttctatgaatatc 109375
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>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence
          Length = 246043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    ttgaatttagatatcaatatg 169
              |||||||||||||||||||||
Sbjct: 108467 ttgaatttagatatcaatatg 108447
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>emb|BX927377.5| Zebrafish DNA sequence from clone DKEY-5I22 in linkage group 2,
             complete sequence
          Length = 164652

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   tgatcatgcacaaatatccaa 389
             |||||||||||||||||||||
Sbjct: 80338 tgatcatgcacaaatatccaa 80358
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>gb|AC110194.11| Mus musculus chromosome 7, clone RP23-238J3, complete sequence
          Length = 223663

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   caatgggcaagcaggtgacctgaa 145
             ||||| ||||||||||||||||||
Sbjct: 13652 caatgtgcaagcaggtgacctgaa 13675
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>gb|AC137552.11| Medicago truncatula clone mth2-9k5, complete sequence
          Length = 122089

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   gaattcagatgttggcatat 504
             ||||||||||||||||||||
Sbjct: 70959 gaattcagatgttggcatat 70978
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>gb|AC107926.6| Homo sapiens, clone RP11-381P6, complete sequence
          Length = 176040

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 379   caaatatccaaatagacttgtgtt 402
             ||||||||||||||||| ||||||
Sbjct: 90867 caaatatccaaatagacatgtgtt 90890
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>gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 379   caaatatccaaatagacttgtgtt 402
             ||||||||||||||||| ||||||
Sbjct: 71744 caaatatccaaatagacatgtgtt 71767
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>gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome 9, complete sequence
          Length = 224139

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    gaaataaaccttctttccttccct 54
             ||||||||||||| ||||||||||
Sbjct: 30943 gaaataaaccttccttccttccct 30920
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>gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, complete sequence
          Length = 176982

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    ttgaatttagatatcaatat 168
              ||||||||||||||||||||
Sbjct: 153954 ttgaatttagatatcaatat 153935
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>gb|BC045104.1| Xenopus laevis, clone IMAGE:5542423, mRNA
          Length = 3768

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 224  cgtgttgcccgtcccaggagaagc 247
            |||| |||||||||||||||||||
Sbjct: 2297 cgtgctgcccgtcccaggagaagc 2320
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>gb|AC157510.1| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875J15,
            complete sequence
          Length = 41401

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  tcaatccctggccctgggta 569
            ||||||||||||||||||||
Sbjct: 7995 tcaatccctggccctgggta 8014
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>gb|AC140202.3| Mus musculus BAC clone RP24-330O15 from 9, complete sequence
          Length = 136977

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    gaaataaaccttctttccttccct 54
             ||||||||||||| ||||||||||
Sbjct: 55277 gaaataaaccttccttccttccct 55254
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>gb|AC131734.4| Mus musculus BAC clone RP23-99I11 from 9, complete sequence
          Length = 212771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     gaaataaaccttctttccttccct 54
              ||||||||||||| ||||||||||
Sbjct: 200298 gaaataaaccttccttccttccct 200275
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>dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete genome
          Length = 430597

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    tctatgaatatcatcccaat 125
              ||||||||||||||||||||
Sbjct: 351898 tctatgaatatcatcccaat 351917
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>emb|AL928538.5| Mouse DNA sequence from clone RP23-102P12 on chromosome X, complete
             sequence
          Length = 140604

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    acaagacttacatcagaaag 88
             ||||||||||||||||||||
Sbjct: 51290 acaagacttacatcagaaag 51309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,541,805
Number of Sequences: 3902068
Number of extensions: 5541805
Number of successful extensions: 122441
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122284
Number of HSP's gapped (non-prelim): 157
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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