ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX005062.4| Zebrafish DNA sequence from clone CH211-95I5 in ... 38 2.1
2gb|AF136752.1| Dictyostelium discoideum MybC (mybC) gene, promot... 38 2.1
3gb|AF026945.1|AF026945 Homo sapiens cig64 mRNA, partial sequence 38 2.1
4emb|AM167526.1| Cocos nucifera partial mRNA for alpha tubulin (C... 38 2.1
5emb|AM076491.1| Cocos nucifera partial mRNA for hypothetical pro... 38 2.1
6ref|XM_633127.1| Dictyostelium discoideum hypothetical protein (... 36 8.4
7gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, comple... 36 8.4
8gb|AC161450.3| Mus musculus BAC clone RP24-75I4 from chromosome ... 36 8.4
9gb|AC101810.5| Mus musculus chromosome 15, clone RP24-278M16, co... 36 8.4
10emb|AL358975.8| Human DNA sequence from clone RP11-375O18 on chr... 36 8.4
11emb|AL355001.20| Human DNA sequence from clone RP11-61K9 on chro... 36 8.4
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.4
13gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, comple... 36 8.4
14dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic D... 36 8.4
15emb|AJ238420.1|HSA238420 Homo sapiens PDGFA gene for platelet-de... 36 8.4
16gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, ... 36 8.4
17emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in... 36 8.4
18gb|BC109246.1| Homo sapiens cDNA clone MGC:129780 IMAGE:40019131... 36 8.4
19emb|AL732519.9| Mouse DNA sequence from clone RP23-172G14 on chr... 36 8.4

>emb|BX005062.4| Zebrafish DNA sequence from clone CH211-95I5 in linkage group 19,
              complete sequence
          Length = 170213

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     ttaaaatggtatcacgggagtgc 44
              |||||||||||||||||| ||||
Sbjct: 147834 ttaaaatggtatcacgggggtgc 147856



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>gb|AF136752.1| Dictyostelium discoideum MybC (mybC) gene, promoter sequence and
            partial cds
          Length = 2035

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 7    tagtaattggattntttaaaat 28
            ||||||||||||| ||||||||
Sbjct: 1201 tagtaattggattttttaaaat 1222



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>gb|AF026945.1|AF026945 Homo sapiens cig64 mRNA, partial sequence
          Length = 272

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 41 gtgctttagtgagggttaa 59
          |||||||||||||||||||
Sbjct: 27 gtgctttagtgagggttaa 9



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>emb|AM167526.1| Cocos nucifera partial mRNA for alpha tubulin (CGTU gene)
          Length = 345

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 41  gtgctttagtgagggttaa 59
           |||||||||||||||||||
Sbjct: 320 gtgctttagtgagggttaa 338



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>emb|AM076491.1| Cocos nucifera partial mRNA for hypothetical protein (ORF1)
          Length = 367

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 41  gtgctttagtgagggttaa 59
           |||||||||||||||||||
Sbjct: 346 gtgctttagtgagggttaa 364



 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 41 gtgctttagtgagggttaa 59
          |||||||||||||||||||
Sbjct: 20 gtgctttagtgagggttaa 2



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>ref|XM_633127.1| Dictyostelium discoideum hypothetical protein (DDB0186662), partial
            mRNA
          Length = 2736

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                     
Query: 11   aattggattntttaaaatggtatca 35
            |||| |||| |||||||||||||||
Sbjct: 1605 aattagattatttaaaatggtatca 1629



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>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence
          Length = 162139

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 38    ggagtgctttagtgaggg 55
             ||||||||||||||||||
Sbjct: 41573 ggagtgctttagtgaggg 41556



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>gb|AC161450.3| Mus musculus BAC clone RP24-75I4 from chromosome 15, complete sequence
          Length = 198734

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 37     gggagtgctttagtgagggtta 58
              ||||||| ||||||||||||||
Sbjct: 114466 gggagtgttttagtgagggtta 114487



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>gb|AC101810.5| Mus musculus chromosome 15, clone RP24-278M16, complete sequence
          Length = 178304

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 37    gggagtgctttagtgagggtta 58
             ||||||| ||||||||||||||
Sbjct: 16925 gggagtgttttagtgagggtta 16946



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>emb|AL358975.8| Human DNA sequence from clone RP11-375O18 on chromosome 9 Contains a
             novel gene, the 5' end of the TLE4 gene for
             transducin-like enhancer of split 4 (E(sp1) homolog,
             Drosophila) (ESG4) and a CpG island, complete sequence
          Length = 196337

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 5     tctagtaattggattntttaa 25
             ||||||||||||||| |||||
Sbjct: 53772 tctagtaattggattttttaa 53752



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>emb|AL355001.20| Human DNA sequence from clone RP11-61K9 on chromosome 13 Contains the
             ZNF237 gene for zinc finger protein 237, a novel gene and
             2 CpG islands, complete sequence
          Length = 82374

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 12    attggattntttaaaatggta 32
             |||||||| ||||||||||||
Sbjct: 38775 attggattttttaaaatggta 38795



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                     
Query: 12       attggattntttaaaatggta 32
                |||||||| ||||||||||||
Sbjct: 17858135 attggattttttaaaatggta 17858155



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>gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, complete sequence
          Length = 158216

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 40    agtgctttagtgagggtt 57
             ||||||||||||||||||
Sbjct: 48779 agtgctttagtgagggtt 48762



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>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654A08
          Length = 154812

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 12    attggattntttaaaatggta 32
             |||||||| ||||||||||||
Sbjct: 97666 attggattttttaaaatggta 97686



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>emb|AJ238420.1|HSA238420 Homo sapiens PDGFA gene for platelet-derived growth factor A chain,
            exons 1 to 4
          Length = 8005

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 38   ggagtgctttagtgaggg 55
            ||||||||||||||||||
Sbjct: 5970 ggagtgctttagtgaggg 5987



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>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome
          Length = 791654

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                   
Query: 8      agtaattggattntttaaaat 28
              |||||||||||| ||||||||
Sbjct: 434510 agtaattggattttttaaaat 434490



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>emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in linkage group 4,
             complete sequence
          Length = 195795

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 13    ttggattntttaaaatggtat 33
             ||||||| |||||||||||||
Sbjct: 18760 ttggattttttaaaatggtat 18780



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>gb|BC109246.1| Homo sapiens cDNA clone MGC:129780 IMAGE:40019131, complete cds
          Length = 1792

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 38  ggagtgctttagtgaggg 55
           ||||||||||||||||||
Sbjct: 502 ggagtgctttagtgaggg 519



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>emb|AL732519.9| Mouse DNA sequence from clone RP23-172G14 on chromosome 4, complete
             sequence
          Length = 169150

 Score = 36.2 bits (18), Expect = 8.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 42    tgctttagtgagggttaa 59
             ||||||||||||||||||
Sbjct: 61527 tgctttagtgagggttaa 61510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238,700
Number of Sequences: 3902068
Number of extensions: 238700
Number of successful extensions: 13677
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13652
Number of HSP's gapped (non-prelim): 25
length of query: 59
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 38
effective length of database: 17,151,101,840
effective search space: 651741869920
effective search space used: 651741869920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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