Clone Name | rbasd0f11 |
---|---|
Clone Library Name | barley_pub |
>emb|BX005062.4| Zebrafish DNA sequence from clone CH211-95I5 in linkage group 19, complete sequence Length = 170213 Score = 38.2 bits (19), Expect = 2.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 ttaaaatggtatcacgggagtgc 44 |||||||||||||||||| |||| Sbjct: 147834 ttaaaatggtatcacgggggtgc 147856
>gb|AF136752.1| Dictyostelium discoideum MybC (mybC) gene, promoter sequence and partial cds Length = 2035 Score = 38.2 bits (19), Expect = 2.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 7 tagtaattggattntttaaaat 28 ||||||||||||| |||||||| Sbjct: 1201 tagtaattggattttttaaaat 1222
>gb|AF026945.1|AF026945 Homo sapiens cig64 mRNA, partial sequence Length = 272 Score = 38.2 bits (19), Expect = 2.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 gtgctttagtgagggttaa 59 ||||||||||||||||||| Sbjct: 27 gtgctttagtgagggttaa 9
>emb|AM167526.1| Cocos nucifera partial mRNA for alpha tubulin (CGTU gene) Length = 345 Score = 38.2 bits (19), Expect = 2.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 gtgctttagtgagggttaa 59 ||||||||||||||||||| Sbjct: 320 gtgctttagtgagggttaa 338
>emb|AM076491.1| Cocos nucifera partial mRNA for hypothetical protein (ORF1) Length = 367 Score = 38.2 bits (19), Expect = 2.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 gtgctttagtgagggttaa 59 ||||||||||||||||||| Sbjct: 346 gtgctttagtgagggttaa 364 Score = 38.2 bits (19), Expect = 2.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 gtgctttagtgagggttaa 59 ||||||||||||||||||| Sbjct: 20 gtgctttagtgagggttaa 2
>ref|XM_633127.1| Dictyostelium discoideum hypothetical protein (DDB0186662), partial mRNA Length = 2736 Score = 36.2 bits (18), Expect = 8.4 Identities = 23/25 (92%) Strand = Plus / Plus Query: 11 aattggattntttaaaatggtatca 35 |||| |||| ||||||||||||||| Sbjct: 1605 aattagattatttaaaatggtatca 1629
>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence Length = 162139 Score = 36.2 bits (18), Expect = 8.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 38 ggagtgctttagtgaggg 55 |||||||||||||||||| Sbjct: 41573 ggagtgctttagtgaggg 41556
>gb|AC161450.3| Mus musculus BAC clone RP24-75I4 from chromosome 15, complete sequence Length = 198734 Score = 36.2 bits (18), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 37 gggagtgctttagtgagggtta 58 ||||||| |||||||||||||| Sbjct: 114466 gggagtgttttagtgagggtta 114487
>gb|AC101810.5| Mus musculus chromosome 15, clone RP24-278M16, complete sequence Length = 178304 Score = 36.2 bits (18), Expect = 8.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 37 gggagtgctttagtgagggtta 58 ||||||| |||||||||||||| Sbjct: 16925 gggagtgttttagtgagggtta 16946
>emb|AL358975.8| Human DNA sequence from clone RP11-375O18 on chromosome 9 Contains a novel gene, the 5' end of the TLE4 gene for transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) (ESG4) and a CpG island, complete sequence Length = 196337 Score = 36.2 bits (18), Expect = 8.4 Identities = 20/21 (95%) Strand = Plus / Minus Query: 5 tctagtaattggattntttaa 25 ||||||||||||||| ||||| Sbjct: 53772 tctagtaattggattttttaa 53752
>emb|AL355001.20| Human DNA sequence from clone RP11-61K9 on chromosome 13 Contains the ZNF237 gene for zinc finger protein 237, a novel gene and 2 CpG islands, complete sequence Length = 82374 Score = 36.2 bits (18), Expect = 8.4 Identities = 20/21 (95%) Strand = Plus / Plus Query: 12 attggattntttaaaatggta 32 |||||||| |||||||||||| Sbjct: 38775 attggattttttaaaatggta 38795
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 8.4 Identities = 20/21 (95%) Strand = Plus / Plus Query: 12 attggattntttaaaatggta 32 |||||||| |||||||||||| Sbjct: 17858135 attggattttttaaaatggta 17858155
>gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, complete sequence Length = 158216 Score = 36.2 bits (18), Expect = 8.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 40 agtgctttagtgagggtt 57 |||||||||||||||||| Sbjct: 48779 agtgctttagtgagggtt 48762
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 36.2 bits (18), Expect = 8.4 Identities = 20/21 (95%) Strand = Plus / Plus Query: 12 attggattntttaaaatggta 32 |||||||| |||||||||||| Sbjct: 97666 attggattttttaaaatggta 97686
>emb|AJ238420.1|HSA238420 Homo sapiens PDGFA gene for platelet-derived growth factor A chain, exons 1 to 4 Length = 8005 Score = 36.2 bits (18), Expect = 8.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 ggagtgctttagtgaggg 55 |||||||||||||||||| Sbjct: 5970 ggagtgctttagtgaggg 5987
>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome Length = 791654 Score = 36.2 bits (18), Expect = 8.4 Identities = 20/21 (95%) Strand = Plus / Minus Query: 8 agtaattggattntttaaaat 28 |||||||||||| |||||||| Sbjct: 434510 agtaattggattttttaaaat 434490
>emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in linkage group 4, complete sequence Length = 195795 Score = 36.2 bits (18), Expect = 8.4 Identities = 20/21 (95%) Strand = Plus / Plus Query: 13 ttggattntttaaaatggtat 33 ||||||| ||||||||||||| Sbjct: 18760 ttggattttttaaaatggtat 18780
>gb|BC109246.1| Homo sapiens cDNA clone MGC:129780 IMAGE:40019131, complete cds Length = 1792 Score = 36.2 bits (18), Expect = 8.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 ggagtgctttagtgaggg 55 |||||||||||||||||| Sbjct: 502 ggagtgctttagtgaggg 519
>emb|AL732519.9| Mouse DNA sequence from clone RP23-172G14 on chromosome 4, complete sequence Length = 169150 Score = 36.2 bits (18), Expect = 8.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 42 tgctttagtgagggttaa 59 |||||||||||||||||| Sbjct: 61527 tgctttagtgagggttaa 61510 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 238,700 Number of Sequences: 3902068 Number of extensions: 238700 Number of successful extensions: 13677 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13652 Number of HSP's gapped (non-prelim): 25 length of query: 59 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 38 effective length of database: 17,151,101,840 effective search space: 651741869920 effective search space used: 651741869920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)