ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; c... 1027 0.0
2emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMW... 1003 0.0
3ref|XM_450593.1| Oryza sativa (japonica cultivar-group), mRNA 145 2e-31
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
5dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
7gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence 111 2e-21
8gb|AY107736.1| Zea mays PCO090313 mRNA sequence 103 6e-19
9ref|XM_546550.2| PREDICTED: Canis familiaris similar to Matrilys... 44 0.47
10gb|AC012470.16| Homo sapiens chromosome 10 clone RP11-506P9, com... 44 0.47
11emb|AL732567.8| Zebrafish DNA sequence from clone CH211-263A23 i... 44 0.47
12ref|XM_507654.1| PREDICTED: Pan troglodytes similar to enoyl Coe... 42 1.9
13gb|BC001091.1| Homo sapiens enoyl Coenzyme A hydratase domain co... 42 1.9
14ref|NM_024693.2| Homo sapiens enoyl Coenzyme A hydratase domain ... 42 1.9
15emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on ch... 42 1.9
16emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.9
17gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, com... 42 1.9
18gb|BC009617.1| Homo sapiens enoyl Coenzyme A hydratase domain co... 42 1.9
19gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, com... 42 1.9
20emb|CR624346.1| full-length cDNA clone CS0DC010YB03 of Neuroblas... 42 1.9
21emb|CR621986.1| full-length cDNA clone CS0DI005YJ06 of Placenta ... 42 1.9
22emb|CR614444.1| full-length cDNA clone CS0DK012YK14 of HeLa cell... 42 1.9
23emb|CR612555.1| full-length cDNA clone CS0DA002YJ22 of Neuroblas... 42 1.9
24gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, com... 42 1.9
25emb|CR601232.1| full-length cDNA clone CS0DD007YE07 of Neuroblas... 42 1.9
26emb|CR599557.1| full-length cDNA clone CS0DI068YK20 of Placenta ... 42 1.9
27gb|AF275677.1|AF275677 Homo sapiens PP1494 protein mRNA, complet... 42 1.9
28gb|AF289604.1|AF289604 Homo sapiens clone pp8332 unknown mRNA 42 1.9
29gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 1... 42 1.9
30dbj|AK222511.1| Homo sapiens mRNA for enoyl Coenzyme A hydratase... 42 1.9
31dbj|AK024562.1| Homo sapiens cDNA: FLJ20909 fis, clone ADSE00425 42 1.9
32emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in... 42 1.9
33gb|M18000.1|HUMRPS17A Human ribosomal protein S17 gene, complete... 42 1.9
34gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, com... 40 7.3
35gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, com... 40 7.3
36gb|AC147049.2| Pan troglodytes BAC clone RP43-131M1 from 3, comp... 40 7.3
37gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, compl... 40 7.3
38gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 7.3
39emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chro... 40 7.3
40emb|AL159151.56| Human DNA sequence from clone RP11-156O2 on chr... 40 7.3
41emb|AL034451.26|HS191E19 Human DNA sequence from clone RP1-191E1... 40 7.3
42emb|X58831.1|CSGDHANC C.sorokiniana gdhANC gene for NADP-specifi... 40 7.3
43emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in... 40 7.3
44gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 7.3
45gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, compl... 40 7.3
46gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, comp... 40 7.3
47gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, com... 40 7.3
48gb|AF306554.1|AF306554 Orseolia oryzae mitotype 2 12S ribosomal ... 40 7.3
49gb|AC092405.2| Papio anubis clone RP41-170F23, complete sequence 40 7.3
50dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 7.3
51emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in... 40 7.3
52emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, c... 40 7.3
53dbj|AP001303.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.3
54emb|BX255891.5| Zebrafish DNA sequence from clone DKEY-263P20 in... 40 7.3
55gb|AC006571.12|AC006571 Homo sapiens, clone hRPK.23_A_1, complet... 40 7.3
56emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chrom... 40 7.3
57gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Can... 40 7.3 
>emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; clone MWG0803
          Length = 598

 Score = 1027 bits (518), Expect = 0.0
 Identities = 536/541 (99%), Gaps = 2/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatttgcc-ccaaacacttgacaacagcaccgacagtaatatgcacagataaataaagt 59
           ||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct: 558 ctatttgccaccaaacacttgacaacag-accgacagkaatatgcacagataaawaaagt 500

                                                                       
Query: 60  tttacaattttacccagaagaaaacacaggcccacaaaggttacacagtatcttnacaaa 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 499 tttacaattttacccagaagaaaacacaggcccacaaaggttacacagtatcttgacaaa 440

                                                                       
Query: 120 gcaacagactaagcaggagaggagtgacaaacataagacattgcttatagcatataacag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcaacagactaagcaggagaggagtgacaaacataagacattgcttatagcatataacag 380

                                                                       
Query: 180 gctatggagggtgggggttaaattgaatagtcctacttgatcggtgacgacagccatctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gctatggagggtgggggttaaattgaatagtcctacttgatcggtgacgacagccatctc 320

                                                                       
Query: 240 gcggccagttctttctttcactggatatgctgttcttccagtttgtcccttcactggatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcggccagttctttctttcactggatatgctgttcttccagtttgtcccttcactggatg 260

                                                                       
Query: 300 tgcatgctgttcttccatctctgtgtagcagcactgctcaggaggagtcgtgagctgggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgcatgctgttcttccatctctgtgtagcagcactgctcaggaggagtcgtgagctgggc 200

                                                                       
Query: 360 tgtccgaatgcatgtccatggatgagtcgtttgaagccgtgggattcggctcgcgggcca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgtccgaatgcatgtccatggatgagtcgtttgaagccgtgggattcggctcgcgggcca 140

                                                                       
Query: 420 agccgttcgcaaagtagcctgcatccccaccctgatccagatggtatggttgcaggcccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agccgttcgcaaagtagcctgcatccccaccctgatccagatggtatggttgcaggcccc 80

                                                                       
Query: 480 ggcgcacggggctggatagtgcgttggaaaagaccgccgagttcttgggctgcgtcaacc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ggcgcacggggctggatagtgcgttggaaaagaccgccgagttcttgggctgcgtcaacc 20

            
Query: 540 c 540
           |
Sbjct: 19  c 19
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>emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMWG0770
          Length = 594

 Score = 1003 bits (506), Expect = 0.0
 Identities = 537/543 (98%), Gaps = 4/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatttgcc-ccaaacacttgacaacagcaccgacagtaatatgcacagataaataaagt 59
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 554 ctatttgccaccaaacacttgacaacag-accgacagtaatatgcacagataaataaagt 496

                                                                       
Query: 60  tttacaattttacccagaagaaaacacaggcccacaaaggttacacagtatcttnacaaa 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 495 tttacaattttacccagaagaaaacacaggcccacaaaggttacacagtatcttgacaaa 436

                                                                       
Query: 120 gcaacagactaagcaggagaggagtgacaaacataagacattgcttatagcatataacag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcaacagactaagcaggagaggagtgacaaacataagacattgcttatagcatataacag 376

                                                                       
Query: 180 gctatggagggtgggggttaaattgaatagtcctacttgatcggtgacga-cagccatct 238
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 375 gctatggagggtgggggttaaattgaatagtcctacttgatcggtgacgaacagccatct 316

                                                                       
Query: 239 cgcggccagttctttcttt-cactggatatgctgttcttccagtttgtcccttcactgga 297
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 cgcggccagttctttcttttcactggatatgctgtkcttccagtttgtcccttcactgga 256

                                                                       
Query: 298 tgtgcatgctgttcttccatctctgtgtagcagcactgctcaggaggagtcgtgagctgg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtgcatgctgttcttccatctctgtgtagcagcactgctcaggaggagtcgtgagctgg 196

                                                                       
Query: 358 gctgtccgaatgcatgtccatggatgagtcgtttgaagccgtgggattcggctcgcgggc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gctgtccgaatgcatgtccatggatgagtcgtttgaagccgtgggattcggctcgcgggc 136

                                                                       
Query: 418 caagccgttcgcaaagtagcctgcatccccaccctgatccagatggtatggttgcaggcc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 caagccgttcgcaaagtagcctgcatccccaccctgatccagatggtatggttgcaggcc 76

                                                                       
Query: 478 ccggcgcacggggctggatagtgcgttggaaaagaccgccgagttcttgggctgcgtcaa 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ccggcgcacggggctggatagtgcgttggaaaagaccgccgagttcttgggctgcgtcaa 16

              
Query: 538 ccc 540
           |||
Sbjct: 15  ccc 13
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>ref|XM_450593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score =  145 bits (73), Expect = 2e-31
 Identities = 160/189 (84%)
 Strand = Plus / Minus

                                                                       
Query: 344 gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgtggga 403
           ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |  
Sbjct: 771 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgtcgag 712

                                                                       
Query: 404 ttcggctcgcgggccaagccgttcgcaaagtagcctgcatccccaccctgatccagatgg 463
           ||  | ||||||   | |||||| || ||||| || ||||| |||||||| ||||| |||
Sbjct: 711 ttttgatcgcggttaacgccgtttgcgaagtaccccgcatcgccaccctgctccaggtgg 652

                                                                       
Query: 464 tatggttgcaggccccggcgcacggggctggatagtgcgttggaaaagaccgccgagttc 523
            |||||||||||| |||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 651 aatggttgcaggctccggcgaacggggctagatagtgcatttgaaaagaccgctgagttc 592

                    
Query: 524 ttgggctgc 532
           |||| ||||
Sbjct: 591 ttggactgc 583



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 192 gggggttaaattgaatagtcctac 215
           ||||||||||||||||||||||||
Sbjct: 881 gggggttaaattgaatagtcctac 858
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  145 bits (73), Expect = 2e-31
 Identities = 160/189 (84%)
 Strand = Plus / Minus

                                                                            
Query: 344      gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgtggga 403
                ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |  
Sbjct: 11686135 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgtcgag 11686076

                                                                            
Query: 404      ttcggctcgcgggccaagccgttcgcaaagtagcctgcatccccaccctgatccagatgg 463
                ||  | ||||||   | |||||| || ||||| || ||||| |||||||| ||||| |||
Sbjct: 11686075 ttttgatcgcggttaacgccgtttgcgaagtaccccgcatcgccaccctgctccaggtgg 11686016

                                                                            
Query: 464      tatggttgcaggccccggcgcacggggctggatagtgcgttggaaaagaccgccgagttc 523
                 |||||||||||| |||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 11686015 aatggttgcaggctccggcgaacggggctagatagtgcatttgaaaagaccgctgagttc 11685956

                         
Query: 524      ttgggctgc 532
                |||| ||||
Sbjct: 11685955 ttggactgc 11685947



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 192      gggggttaaattgaatagtcctac 215
                ||||||||||||||||||||||||
Sbjct: 11686245 gggggttaaattgaatagtcctac 11686222
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score =  145 bits (73), Expect = 2e-31
 Identities = 160/189 (84%)
 Strand = Plus / Minus

                                                                          
Query: 344    gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgtggga 403
              ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |  
Sbjct: 120769 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgtcgag 120710

                                                                          
Query: 404    ttcggctcgcgggccaagccgttcgcaaagtagcctgcatccccaccctgatccagatgg 463
              ||  | ||||||   | |||||| || ||||| || ||||| |||||||| ||||| |||
Sbjct: 120709 ttttgatcgcggttaacgccgtttgcgaagtaccccgcatcgccaccctgctccaggtgg 120650

                                                                          
Query: 464    tatggttgcaggccccggcgcacggggctggatagtgcgttggaaaagaccgccgagttc 523
               |||||||||||| |||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 120649 aatggttgcaggctccggcgaacggggctagatagtgcatttgaaaagaccgctgagttc 120590

                       
Query: 524    ttgggctgc 532
              |||| ||||
Sbjct: 120589 ttggactgc 120581



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 192    gggggttaaattgaatagtcctac 215
              ||||||||||||||||||||||||
Sbjct: 120879 gggggttaaattgaatagtcctac 120856
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>dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full
           insert sequence
          Length = 1102

 Score =  145 bits (73), Expect = 2e-31
 Identities = 160/189 (84%)
 Strand = Plus / Minus

                                                                       
Query: 344 gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgtggga 403
           ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| |  
Sbjct: 771 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgtcgag 712

                                                                       
Query: 404 ttcggctcgcgggccaagccgttcgcaaagtagcctgcatccccaccctgatccagatgg 463
           ||  | ||||||   | |||||| || ||||| || ||||| |||||||| ||||| |||
Sbjct: 711 ttttgatcgcggttaacgccgtttgcgaagtaccccgcatcgccaccctgctccaggtgg 652

                                                                       
Query: 464 tatggttgcaggccccggcgcacggggctggatagtgcgttggaaaagaccgccgagttc 523
            |||||||||||| |||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 651 aatggttgcaggctccggcgaacggggctagatagtgcatttgaaaagaccgctgagttc 592

                    
Query: 524 ttgggctgc 532
           |||| ||||
Sbjct: 591 ttggactgc 583



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 192 gggggttaaattgaatagtcctac 215
           ||||||||||||||||||||||||
Sbjct: 881 gggggttaaattgaatagtcctac 858
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>gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence
          Length = 1357

 Score =  111 bits (56), Expect = 2e-21
 Identities = 170/208 (81%)
 Strand = Plus / Minus

                                                                        
Query: 333  ctgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttg 392
            |||||||| ||||||| ||||||||||||||||| |||||||||||||| || || || |
Sbjct: 1120 ctgctcagtaggagtcatgagctgggctgtccgagtgcatgtccatggacgaatcattcg 1061

                                                                        
Query: 393  aagccgtgggattcggctcgcgggccaagccgttcgcaaagtagcctgcatccccaccct 452
            |||||||||| |||   ||||||      |||||||| ||||| |||||||||||  |||
Sbjct: 1060 aagccgtggggttcacatcgcggcttgcaccgttcgcgaagtaccctgcatccccgtcct 1001

                                                                        
Query: 453  gatccagatggtatggttgcaggccccggcgcacggggctggatagtgcgttggaaaaga 512
            | || || ||||| |||||||||| ||| || | ||||||||||| |||| | |||||||
Sbjct: 1000 gctctaggtggtaaggttgcaggctccgccggatggggctggataatgcgcttgaaaaga 941

                                        
Query: 513  ccgccgagttcttgggctgcgtcaaccc 540
            ||   || ||||||| ||| ||||||||
Sbjct: 940  ccatggaattcttggactgtgtcaaccc 913
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>gb|AY107736.1| Zea mays PCO090313 mRNA sequence
          Length = 1090

 Score =  103 bits (52), Expect = 6e-19
 Identities = 169/208 (81%)
 Strand = Plus / Minus

                                                                       
Query: 333 ctgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttg 392
           |||||||| ||||||| ||||||||||||||||| |||||||||||||| || || || |
Sbjct: 828 ctgctcagtaggagtcatgagctgggctgtccgagtgcatgtccatggacgaatcattcg 769

                                                                       
Query: 393 aagccgtgggattcggctcgcgggccaagccgttcgcaaagtagcctgcatccccaccct 452
           |||||||||| |||   ||||||      |||||||| ||||| |||||||||||  |||
Sbjct: 768 aagccgtggggttcacatcgcggcttgcaccgttcgcgaagtaccctgcatccccgtcct 709

                                                                       
Query: 453 gatccagatggtatggttgcaggccccggcgcacggggctggatagtgcgttggaaaaga 512
           | || || ||||| ||| |||||| ||| || | ||||||||||| |||| | |||||||
Sbjct: 708 gctctaggtggtaaggtggcaggctccgccggatggggctggataatgcgcttgaaaaga 649

                                       
Query: 513 ccgccgagttcttgggctgcgtcaaccc 540
           ||   || ||||||| ||| ||||||||
Sbjct: 648 ccatggaattcttggactgtgtcaaccc 621



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   cagtaatatgcacagataaat 54
            |||||||||||||||||||||
Sbjct: 1064 cagtaatatgcacagataaat 1044
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>ref|XM_546550.2| PREDICTED: Canis familiaris similar to Matrilysin precursor (Pump-1
            protease) (Uterine metalloproteinase) (Matrix
            metalloproteinase-7) (MMP-7) (Matrin) (LOC489432), mRNA
          Length = 1045

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 41   atgcacagataaataaagtttt 62
            ||||||||||||||||||||||
Sbjct: 1015 atgcacagataaataaagtttt 1036
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>gb|AC012470.16| Homo sapiens chromosome 10 clone RP11-506P9, complete sequence
          Length = 122543

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 81    aaacacaggcccacaaaggtta 102
             ||||||||||||||||||||||
Sbjct: 31975 aaacacaggcccacaaaggtta 31996
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>emb|AL732567.8| Zebrafish DNA sequence from clone CH211-263A23 in linkage group 6,
             complete sequence
          Length = 152840

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 61    ttacaattttacccagaagaaa 82
             ||||||||||||||||||||||
Sbjct: 60018 ttacaattttacccagaagaaa 59997
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>ref|XM_507654.1| PREDICTED: Pan troglodytes similar to enoyl Coenzyme A hydratase
           domain containing 3 (LOC450300), mRNA
          Length = 1401

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 858 cccagaagaaaacacaggccc 838
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>gb|BC001091.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 3, mRNA
           (cDNA clone IMAGE:3505013), partial cds
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 271 cccagaagaaaacacaggccc 251
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>ref|NM_024693.2| Homo sapiens enoyl Coenzyme A hydratase domain containing 3
           (ECHDC3), mRNA
          Length = 1648

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 512 cccagaagaaaacacaggccc 492
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>emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on chromosome 10 Contains
             gene FLJ20909, the gene for a novel protein (MGC35403), a
             novel gene (LOC219731), the 3' end of the UPF2 gene for
             UPF2 regulator of nonsense transcripts homolog (yeast)
             (FLJ38872) and four CpG islands, complete sequence
          Length = 206587

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    cccagaagaaaacacaggccc 92
             |||||||||||||||||||||
Sbjct: 26307 cccagaagaaaacacaggccc 26287
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>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24
          Length = 304250

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    tacttgatcggtgacgacagc 233
              |||||||||||||||||||||
Sbjct: 301986 tacttgatcggtgacgacagc 301966
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>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence
          Length = 157246

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 72   cccagaagaaaacacaggccc 92
            |||||||||||||||||||||
Sbjct: 8301 cccagaagaaaacacaggccc 8281
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>gb|BC009617.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 3, mRNA
           (cDNA clone MGC:16831 IMAGE:3893103), complete cds
          Length = 1609

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 460 cccagaagaaaacacaggccc 440
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>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence
          Length = 169125

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    cccagaagaaaacacaggccc 92
             |||||||||||||||||||||
Sbjct: 79871 cccagaagaaaacacaggccc 79851
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>emb|CR624346.1| full-length cDNA clone CS0DC010YB03 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1597

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 509 cccagaagaaaacacaggccc 489
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>emb|CR621986.1| full-length cDNA clone CS0DI005YJ06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1569

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 479 cccagaagaaaacacaggccc 459
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>emb|CR614444.1| full-length cDNA clone CS0DK012YK14 of HeLa cells Cot
          25-normalized of Homo sapiens (human)
          Length = 1065

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 72 cccagaagaaaacacaggccc 92
          |||||||||||||||||||||
Sbjct: 25 cccagaagaaaacacaggccc 5
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>emb|CR612555.1| full-length cDNA clone CS0DA002YJ22 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1877

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 72   cccagaagaaaacacaggccc 92
            |||||||||||||||||||||
Sbjct: 1703 cccagaagaaaacacaggccc 1683
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>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence
          Length = 186812

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    cccagaagaaaacacaggccc 92
             |||||||||||||||||||||
Sbjct: 81974 cccagaagaaaacacaggccc 81994
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>emb|CR601232.1| full-length cDNA clone CS0DD007YE07 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1540

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 458 cccagaagaaaacacaggccc 438
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>emb|CR599557.1| full-length cDNA clone CS0DI068YK20 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1545

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 462 cccagaagaaaacacaggccc 442
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>gb|AF275677.1|AF275677 Homo sapiens PP1494 protein mRNA, complete cds
          Length = 1648

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 512 cccagaagaaaacacaggccc 492
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>gb|AF289604.1|AF289604 Homo sapiens clone pp8332 unknown mRNA
          Length = 1771

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 494 cccagaagaaaacacaggccc 474
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>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence
          Length = 157200

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    cccagaagaaaacacaggccc 92
             |||||||||||||||||||||
Sbjct: 21464 cccagaagaaaacacaggccc 21444
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>dbj|AK222511.1| Homo sapiens mRNA for enoyl Coenzyme A hydratase domain containing
           3 variant, clone: adSE01048
          Length = 1615

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 477 cccagaagaaaacacaggccc 457
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>dbj|AK024562.1| Homo sapiens cDNA: FLJ20909 fis, clone ADSE00425
          Length = 1588

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  cccagaagaaaacacaggccc 92
           |||||||||||||||||||||
Sbjct: 451 cccagaagaaaacacaggccc 431
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>emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in linkage group 11,
             complete sequence
          Length = 137302

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    aaagttttacaattttaccca 75
             |||||||||||||||||||||
Sbjct: 65499 aaagttttacaattttaccca 65519
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>gb|M18000.1|HUMRPS17A Human ribosomal protein S17 gene, complete cds
          Length = 4029

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 72   cccagaagaaaacacaggccc 92
            |||||||||||||||||||||
Sbjct: 3662 cccagaagaaaacacaggccc 3642
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>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence
          Length = 182866

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ttccatctctgtgtagcagc 331
              ||||||||||||||||||||
Sbjct: 128746 ttccatctctgtgtagcagc 128727
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>gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, complete sequence
          Length = 173848

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ttctttctttcactggatat 267
             ||||||||||||||||||||
Sbjct: 43543 ttctttctttcactggatat 43562
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>gb|AC147049.2| Pan troglodytes BAC clone RP43-131M1 from 3, complete sequence
          Length = 185806

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      tatttgccccaaacacttgacaac 25
              ||||||||||||| ||||||||||
Sbjct: 133662 tatttgccccaaagacttgacaac 133639
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>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     tatttgccccaaacacttgacaac 25
             ||||||||||||| ||||||||||
Sbjct: 27422 tatttgccccaaagacttgacaac 27399
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 465    atggttgcaggccccggcgcacgg 488
              |||| |||||||||||||||||||
Sbjct: 715507 atgggtgcaggccccggcgcacgg 715484
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>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete
             sequence
          Length = 139086

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taaagttttacaattttacc 73
             ||||||||||||||||||||
Sbjct: 44423 taaagttttacaattttacc 44442
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>emb|AL159151.56| Human DNA sequence from clone RP11-156O2 on chromosome 13, complete
             sequence
          Length = 59116

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ctgttcttccatctctgtgt 325
             ||||||||||||||||||||
Sbjct: 45267 ctgttcttccatctctgtgt 45286
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>emb|AL034451.26|HS191E19 Human DNA sequence from clone RP1-191E19 on chromosome 6q23.2-24.2,
            complete sequence
          Length = 110885

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 49   ataaataaagttttacaattttac 72
            |||||||||| |||||||||||||
Sbjct: 2492 ataaataaagctttacaattttac 2515
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>emb|X58831.1|CSGDHANC C.sorokiniana gdhANC gene for NADP-specific glutamate dehydrogenase
            (ANC=Ammonium-inducible, Nuclear encoded, Chloroplastic
            isoenzyme)
          Length = 9872

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  gcatgtccatggatgagtcg 388
            ||||||||||||||||||||
Sbjct: 9356 gcatgtccatggatgagtcg 9375
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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
             complete sequence
          Length = 168402

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    aaataaagttttacaatttt 70
             ||||||||||||||||||||
Sbjct: 39721 aaataaagttttacaatttt 39702
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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tgggggttaaattgaatagt 210
             ||||||||||||||||||||
Sbjct: 88195 tgggggttaaattgaatagt 88214
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>gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, complete sequence
          Length = 176815

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    acataagacattgcttatag 169
              ||||||||||||||||||||
Sbjct: 155089 acataagacattgcttatag 155070
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>gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, complete sequence
          Length = 228156

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   cccttcactggatgtgcatg 305
             ||||||||||||||||||||
Sbjct: 29161 cccttcactggatgtgcatg 29142
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>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence
          Length = 168539

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   acataagacattgcttatag 169
             ||||||||||||||||||||
Sbjct: 22008 acataagacattgcttatag 21989
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>gb|AF306554.1|AF306554 Orseolia oryzae mitotype 2 12S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 414

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  taaataaagttttacaattt 69
           ||||||||||||||||||||
Sbjct: 302 taaataaagttttacaattt 283
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>gb|AC092405.2| Papio anubis clone RP41-170F23, complete sequence
          Length = 182902

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   actaagcaggagaggagtga 146
             ||||||||||||||||||||
Sbjct: 14739 actaagcaggagaggagtga 14720
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 39      atatgcacagataaataaagtttt 62
               ||||||||||||| ||||||||||
Sbjct: 1104352 atatgcacagatatataaagtttt 1104329
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>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22,
            complete sequence
          Length = 165445

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   gataaataaagttttacaat 67
            ||||||||||||||||||||
Sbjct: 3625 gataaataaagttttacaat 3644
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>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence
          Length = 183614

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    aaataaagttttacaatttt 70
             ||||||||||||||||||||
Sbjct: 19006 aaataaagttttacaatttt 18987
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>dbj|AP001303.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24M9
          Length = 45292

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   gttcttccagtttgtccctt 290
             ||||||||||||||||||||
Sbjct: 17465 gttcttccagtttgtccctt 17446
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>emb|BX255891.5| Zebrafish DNA sequence from clone DKEY-263P20 in linkage group 20,
             complete sequence
          Length = 104855

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aataaagttttacaatttta 71
             ||||||||||||||||||||
Sbjct: 25058 aataaagttttacaatttta 25039
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>gb|AC006571.12|AC006571 Homo sapiens, clone hRPK.23_A_1, complete sequence
          Length = 134896

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    ataaataaagttttacaattttac 72
             |||||||||| |||||||||||||
Sbjct: 83539 ataaataaagctttacaattttac 83562
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>emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chromosome X, complete
             sequence
          Length = 136485

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gccagttctttctttcactg 262
             ||||||||||||||||||||
Sbjct: 27867 gccagttctttctttcactg 27848
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>gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 173453

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    ttctttctttcactggatat 267
              ||||||||||||||||||||
Sbjct: 123254 ttctttctttcactggatat 123273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,051,762
Number of Sequences: 3902068
Number of extensions: 6051762
Number of successful extensions: 99788
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99645
Number of HSP's gapped (non-prelim): 135
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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