ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd0f02 |
|---|---|
| Clone Library Name | barley_pub |
>YM09_PARTE (P15610) Hypothetical 22.9 kDa protein (ORF9)| Length = 204 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = -3 Query: 567 TNDEEGFIDCDDVGADENEDAENAKTNGVQVVEAEIYL----EPSKRE*DNGSQQ*PSKY 400 ++ +EG DD G ++D E A ++G VVE E L E S E + G Q K Sbjct: 57 SSGDEGEASSDDEGDASSDDEEEASSDGEGVVEDEETLDAEGEDSDEEGEGGMQAVDCKK 116 Query: 399 FFAHK 385 FF K Sbjct: 117 FFKLK 121
>FEMA_STAAW (P0A0A4) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAU (P0A0A5) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAS (Q6G9I5) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAR (Q6GH31) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAN (Q7A5R3) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAM (Q99UA7) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAC (Q5HG45) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>FEMA_STAAB (Q2YXZ5) Aminoacyltransferase femA (EC 2.3.2.-) (Factor essential| for expression of methicillin resistance A) Length = 420 Score = 30.8 bits (68), Expect = 2.9 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%) Frame = -3 Query: 519 ENEDAENAKTNGVQVVEA-EIYLEPSKRE*DNGSQQ*P--SKYFFAHKTEKT--TKGANA 355 EN+ A N + N Q ++A E +E KR + + P + +FF + E G + Sbjct: 275 ENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSN 334 Query: 354 AIRLLKVVCLVGWVLVNYMFKR*MDEYIWVG--GKYT 250 A R V W ++NY +D Y + G GK+T Sbjct: 335 AFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFT 371
>KLRF1_MACFA (Q8MI05) Killer cell lectin-like receptor subfamily F member 1| (Lectin-like receptor F1) (Activating coreceptor NKp80) Length = 231 Score = 25.0 bits (53), Expect(2) = 5.3 Identities = 7/18 (38%), Positives = 13/18 (72%) Frame = -3 Query: 276 YIWVGGKYTSMRMLIFWI 223 Y+W+G +TS++M W+ Sbjct: 170 YVWMGLNFTSLKMTWTWV 187 Score = 23.5 bits (49), Expect(2) = 5.3 Identities = 10/44 (22%), Positives = 23/44 (52%) Frame = -1 Query: 479 K*WKLKYIWNLPKENRIMVRSNDLPNIFLHTRPRKQQKVLMQLS 348 K W Y++ L +++ +++ ++L F+ R+ V M L+ Sbjct: 133 KSWSDSYVYCLERKSHLLIIQDELEMAFIQKNLRQSNYVWMGLN 176
>UVRB_MYCGE (P47319) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 656 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +2 Query: 11 KNVRLQYWKLHEEHHPNVMHNLTIFLPVKLKLKAS 115 + V+++Y KLH + V+ LT P+KLK K++ Sbjct: 575 RTVQMEYNKLHNKTPKTVVKPLTFVQPIKLKAKSN 609 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,290,709 Number of Sequences: 219361 Number of extensions: 1403172 Number of successful extensions: 3260 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3259 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
