ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd0f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC124484.5| Mus musculus BAC clone RP24-128N20 from chromosome 12, complete sequence Length = 204507 Score = 48.1 bits (24), Expect = 0.032 Identities = 33/35 (94%), Gaps = 2/35 (5%) Strand = Plus / Minus Query: 190 aataaaactgaaatcatc--catcatcatcaccat 222 |||||||||||||||||| ||||||||||||||| Sbjct: 170417 aataaaactgaaatcatcatcatcatcatcaccat 170383
>gb|AC124595.4| Mus musculus BAC clone RP23-18J1 from chromosome 12, complete sequence Length = 210781 Score = 48.1 bits (24), Expect = 0.032 Identities = 33/35 (94%), Gaps = 2/35 (5%) Strand = Plus / Minus Query: 190 aataaaactgaaatcatc--catcatcatcaccat 222 |||||||||||||||||| ||||||||||||||| Sbjct: 10653 aataaaactgaaatcatcatcatcatcatcaccat 10619
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111O13, complete sequence Length = 126332 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 180 ctactacttaaataaaactgaa 201 |||||||||||||||||||||| Sbjct: 122497 ctactacttaaataaaactgaa 122476
>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete sequence Length = 143186 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 atccatcatcatcaccatgatc 226 |||||||||||||||||||||| Sbjct: 30592 atccatcatcatcaccatgatc 30613
>emb|AL772295.5| Zebrafish DNA sequence from clone CH211-14A17 in linkage group 2 Contains a novel gene for a protein similar to apoptotic chromatin condensation inducer in the nucleus (ACINUS), two novel genes, a novel gene for a protein with a short chain dehydrogenase domain, a novel homeodomain gene, two novel genes for proteins with a zona pellucida-like domain, a novel ubiquitin-like gene, a novel gene similar to AP1G2 (adaptor-related protein complex 1, gamma 2 subunit), a novel gene similar to SLC7A8 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 8), a novel gene similar to human and mouse SKB1 homolog (S. pombe), a gene for a novel proteasome, the psmb5 gene for proteasome (prosome, macropain) subunit, beta type, 5 and two CpG islands, complete sequence Length = 194351 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 493 ttttgcattttcagcatcttcatttt 518 |||| ||||||||||||||||||||| Sbjct: 32182 ttttacattttcagcatcttcatttt 32157
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 180 ctactacttaaataaaactgaa 201 |||||||||||||||||||||| Sbjct: 2290066 ctactacttaaataaaactgaa 2290045
>gb|AC009950.6| Homo sapiens BAC clone RP11-98F19 from 2, complete sequence Length = 135506 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 438 ctcttttggaaggttccaaata 459 |||||||||||||||||||||| Sbjct: 75009 ctcttttggaaggttccaaata 74988
>emb|BX004880.9| Zebrafish DNA sequence from clone CH211-69B7 in linkage group 11, complete sequence Length = 194839 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 taactattttcttgccagtgaa 96 |||||||||||||||||||||| Sbjct: 59075 taactattttcttgccagtgaa 59096
>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence Length = 205118 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 493 ttttgcattttcagcatcttcatttt 518 |||| ||||||||||||||||||||| Sbjct: 51175 ttttacattttcagcatcttcatttt 51200
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 180 ctactacttaaataaaactgaa 201 |||||||||||||||||||||| Sbjct: 17981 ctactacttaaataaaactgaa 17960
>gb|AC167963.5| Mus musculus chromosome 1, clone RP24-171A4, complete sequence Length = 172954 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 tcagcatcttcattttcatct 523 ||||||||||||||||||||| Sbjct: 49944 tcagcatcttcattttcatct 49924
>ref|XM_632697.1| Dictyostelium discoideum hypothetical protein (DDB0186863), partial mRNA Length = 6018 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 tcagcatcttcattttcatct 523 ||||||||||||||||||||| Sbjct: 5000 tcagcatcttcattttcatct 4980
>gb|AC126421.12| Mus musculus chromosome 1, clone RP23-167H24, complete sequence Length = 218458 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 agattacaatattggaaatta 40 ||||||||||||||||||||| Sbjct: 84262 agattacaatattggaaatta 84242
>emb|AL596210.20| Human DNA sequence from clone RP11-92O17 on chromosome 1 Contains part of the CAMTA1 gene for calmodulin binding transcription activator 1, complete sequence Length = 107112 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 atcatccatcatcatcaccat 222 ||||||||||||||||||||| Sbjct: 15471 atcatccatcatcatcaccat 15491
>emb|AL445256.18| Human DNA sequence from clone RP11-167K24 on chromosome 6 Contains part of the RAB3IP2 gene for RAB3 interacting protein 2, complete sequence Length = 66683 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 aaggttccaaatatatttcag 467 ||||||||||||||||||||| Sbjct: 42047 aaggttccaaatatatttcag 42067
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 aatgttagattacaatattggaaat 38 ||||||||| ||||||||||||||| Sbjct: 200558 aatgttagaatacaatattggaaat 200582
>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence Length = 255667 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 505 agcatcttcattttcatctgc 525 ||||||||||||||||||||| Sbjct: 136205 agcatcttcattttcatctgc 136225
>gb|AC105201.3| Homo sapiens chromosome 18, clone RP11-244M2, complete sequence Length = 151032 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 464 tcagcttccactacttgcacc 484 ||||||||||||||||||||| Sbjct: 60803 tcagcttccactacttgcacc 60783
>dbj|AK141454.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530024H20 product:Warning: possibly chimeric clone, full insert sequence Length = 3738 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 1310 gcatcttcattttcatctgcgccaa 1334
>dbj|AK165025.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130305J09 product:Hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 3221 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 506 gcatcttcattttcatctgcgccaa 530
>dbj|AK032569.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430598L15 product:hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 3715 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 938 gcatcttcattttcatctgcgccaa 962
>dbj|AK048673.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230001G05 product:hypothetical alpha/beta-Hydrolases structure containing protein, full insert sequence Length = 3512 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 733 gcatcttcattttcatctgcgccaa 757
>gb|AC156948.10| Mus musculus 10 BAC RP24-347D15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 181617 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 42745 gcatcttcattttcatctgcgccaa 42769
>emb|BX465202.4| Zebrafish DNA sequence from clone CH211-191G24 in linkage group 2, complete sequence Length = 170771 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 cattttcagcatcttcatttt 518 ||||||||||||||||||||| Sbjct: 15128 cattttcagcatcttcatttt 15148
>dbj|AK173299.1| Mus musculus mRNA for mKIAA1913 protein Length = 4115 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 1338 gcatcttcattttcatctgcgccaa 1362
>gb|BC048001.1| Mus musculus, clone IMAGE:6707334, mRNA Length = 525 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 241 gcatcttcattttcatctgcgccaa 217
>ref|NM_029881.1| Mus musculus RIKEN cDNA C030003D03 gene (C030003D03Rik), mRNA Length = 3715 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 gcatcttcattttcatctgcaccaa 530 |||||||||||||||||||| |||| Sbjct: 938 gcatcttcattttcatctgcgccaa 962
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 ttttgcattttcagcatcttc 513 ||||||||||||||||||||| Sbjct: 394092 ttttgcattttcagcatcttc 394112
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 ttttgcattttcagcatcttc 513 ||||||||||||||||||||| Sbjct: 915307 ttttgcattttcagcatcttc 915327
>emb|BX004840.8| Zebrafish DNA sequence from clone DKEY-19A16 in linkage group 22, complete sequence Length = 155968 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 taactattttcttgccagtga 95 ||||||||||||||||||||| Sbjct: 55686 taactattttcttgccagtga 55666
>emb|CT030641.11| Mouse DNA sequence from clone RP23-32M15 on chromosome 16, complete sequence Length = 224292 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tccatcatcatcaccatgatc 226 ||||||||||||||||||||| Sbjct: 118477 tccatcatcatcaccatgatc 118497
>emb|AL732633.6| Mouse DNA sequence from clone RP23-320E20 on chromosome 11, complete sequence Length = 99697 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 ttacatgaggaacatcatcca 58 ||||||||||||||||||||| Sbjct: 41998 ttacatgaggaacatcatcca 42018
>gb|AC167139.9| Mus musculus chromosome 1, clone RP23-397C14, complete sequence Length = 198105 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 tcagcatcttcattttcatct 523 ||||||||||||||||||||| Sbjct: 189452 tcagcatcttcattttcatct 189432 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 tcagcatcttcattttcatct 523 ||||||||||||||||||||| Sbjct: 117628 tcagcatcttcattttcatct 117608
>dbj|AB002338.1| Human mRNA for KIAA0340 gene, partial cds Length = 6395 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 aaggttccaaatatatttcag 467 ||||||||||||||||||||| Sbjct: 3316 aaggttccaaatatatttcag 3336
>dbj|AB045726.1| Homo sapiens Nbla00761 mRNA for RIM short form, complete cds Length = 6638 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 aaggttccaaatatatttcag 467 ||||||||||||||||||||| Sbjct: 3559 aaggttccaaatatatttcag 3579
>ref|XM_642341.1| Dictyostelium discoideum hypothetical protein (DDB0189662), partial mRNA Length = 3546 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 498 cattttcagcatcttcattttcatctgcacca 529 |||||||| || || ||||||||||||||||| Sbjct: 1618 cattttcatcagctccattttcatctgcacca 1587
>ref|XM_636453.1| Dictyostelium discoideum hypothetical protein (DDB0206027), partial mRNA Length = 1947 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 cattttcagcatcttcattttcat 521 |||||||| ||||||||||||||| Sbjct: 229 cattttcatcatcttcattttcat 206
>ref|XM_630124.1| Dictyostelium discoideum hypothetical protein (DDB0183899), partial mRNA Length = 3219 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 attttcagcatcttcattttcatc 522 ||||||| |||||||||||||||| Sbjct: 1587 attttcatcatcttcattttcatc 1564
>gb|AC005572.1| Homo sapiens chromosome 5, PAC clone 248b21 (LBNL H141), complete sequence Length = 95448 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 taactattttcttgccagtgaaac 98 |||||||||||||| ||||||||| Sbjct: 61175 taactattttcttgtcagtgaaac 61152
>gb|AC149266.1| Solanum demissum chromosome 5 clone PGEC872C13 map MAP_LOC, complete sequence Length = 100564 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 catcttcattttcatctgca 526 |||||||||||||||||||| Sbjct: 14683 catcttcattttcatctgca 14664
>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome Length = 920079 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 tcagcatcttcattttcatc 522 |||||||||||||||||||| Sbjct: 578646 tcagcatcttcattttcatc 578665
>ref|XM_816208.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053510377.200) partial mRNA Length = 873 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 catcttcattttcatctgca 526 |||||||||||||||||||| Sbjct: 247 catcttcattttcatctgca 228
>ref|XM_719618.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04417) partial mRNA Length = 345 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 tatatactcatccatttatctttt 294 |||||| ||||||||||||||||| Sbjct: 313 tatataatcatccatttatctttt 336
>gb|AY644517.2| Bos taurus T cell receptor gamma (TCRG) gene, partial sequence Length = 243699 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ttttcttgccagtgaaactt 100 |||||||||||||||||||| Sbjct: 230301 ttttcttgccagtgaaactt 230320
>emb|Z97192.2|HS29C18 Human DNA sequence from clone RP1-29C18 on chromosome 22, complete sequence Length = 143701 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccatcatcatcaccatgatc 226 |||||||||||||||||||| Sbjct: 59295 ccatcatcatcaccatgatc 59276
>emb|AL591034.5| Human DNA sequence from clone RP11-96J19 on chromosome 6 Contains a 60S ribosomal protein L31 (RPL31) pseudogene, a replication protein A3 (RPA3) pseudogene and the gene for a novel protein, complete sequence Length = 94727 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ttatcttttgaacatatagt 305 |||||||||||||||||||| Sbjct: 58457 ttatcttttgaacatatagt 58438
>emb|AL138695.13| Human DNA sequence from clone RP11-342J4 on chromosome 13, complete sequence Length = 68273 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 agattacaatattggaaattacat 43 ||||||||| |||||||||||||| Sbjct: 4046 agattacaacattggaaattacat 4023
>emb|AL031429.11|HS333A15 Human DNA sequence from clone RP3-333A15 on chromosome 1p31.1-31.3 Contains the 5' end of the PTGER3 gene for prostaglandin E receptor 3 (subtype EP3), part of a novel gene and a CpG island, complete sequence Length = 133221 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ataaaaatgttagattacaatatt 32 ||||||||||||||||| |||||| Sbjct: 110614 ataaaaatgttagattaaaatatt 110591
>emb|AL805905.5| Zebrafish DNA sequence from clone CH211-214D15 in linkage group 18 Contains a novel gene and three CpG islands, complete sequence Length = 199745 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 taactattttcttgccagtgaaac 98 ||||| |||||||||||||||||| Sbjct: 193270 taactgttttcttgccagtgaaac 193293
>emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067G20, complete sequence Length = 145825 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 440 cttttggaaggttccaaatatatttcag 467 |||| |||||||||||||||| |||||| Sbjct: 75185 ctttcggaaggttccaaatatctttcag 75158
>emb|AL161591.2|ATCHRIV87 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87 Length = 196339 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 ttcttcatcattagtagtta 572 |||||||||||||||||||| Sbjct: 164194 ttcttcatcattagtagtta 164175
>gb|AC120393.16| Mus musculus chromosome 7, clone RP24-312B12, complete sequence Length = 183977 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 caaaacaagaccgacaaaca 157 |||||||||||||||||||| Sbjct: 104926 caaaacaagaccgacaaaca 104907
>gb|AC010433.9| Homo sapiens chromosome 5 clone CTD-2202L20, complete sequence Length = 258929 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 taactattttcttgccagtgaaac 98 |||||||||||||| ||||||||| Sbjct: 113034 taactattttcttgtcagtgaaac 113011
>gb|AC171142.3| Cavia porcellus clone CH234-487I3, complete sequence Length = 106116 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tatttggaaggtcattgctg 420 |||||||||||||||||||| Sbjct: 75166 tatttggaaggtcattgctg 75147
>gb|AC010683.10| Homo sapiens BAC clone RP11-364M6 from 4, complete sequence Length = 175283 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 tttcagcatcttcattttca 520 |||||||||||||||||||| Sbjct: 108467 tttcagcatcttcattttca 108486
>gb|AC093046.1| Drosophila melanogaster, chromosome 2R, region 43D-43E, BAC clone BACR29D02, complete sequence Length = 158372 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 catcttcattttcatctgca 526 |||||||||||||||||||| Sbjct: 157390 catcttcattttcatctgca 157371
>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence Length = 177314 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 aatattggaaattacatgag 46 |||||||||||||||||||| Sbjct: 88047 aatattggaaattacatgag 88066
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 440 cttttggaaggttccaaatatatttcag 467 |||| |||||||||||||||| |||||| Sbjct: 16114435 ctttcggaaggttccaaatatctttcag 16114408
>gb|AC007301.8|AC007301 Drosophila melanogaster, chromosome 2R, region 43E12-44F1, BAC clone BACR04B09, complete sequence Length = 174707 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 catcttcattttcatctgca 526 |||||||||||||||||||| Sbjct: 134972 catcttcattttcatctgca 134991
>gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, complete sequence Length = 146524 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccatcatcatcaccatgatc 226 |||||||||||||||||||| Sbjct: 84534 ccatcatcatcaccatgatc 84515
>gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, complete sequence Length = 235286 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 atcatccatcatcatcacca 221 |||||||||||||||||||| Sbjct: 40155 atcatccatcatcatcacca 40136
>gb|AC007222.5| Homo sapiens chromosome 16 clone RP11-441K8, complete sequence Length = 187191 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccatcatcatcaccatgatc 226 |||||||||||||||||||| Sbjct: 44395 ccatcatcatcaccatgatc 44414
>gb|AC007131.4| Homo sapiens BAC clone RP11-179A20 from 2, complete sequence Length = 160087 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tatattacataaaaatgtta 20 |||||||||||||||||||| Sbjct: 95818 tatattacataaaaatgtta 95799
>gb|DQ108883.1| Arabidopsis thaliana clone 92021 mRNA sequence Length = 681 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 ttcttcatcattagtagtta 572 |||||||||||||||||||| Sbjct: 457 ttcttcatcattagtagtta 438
>gb|AC022316.18|AC022316 Homo sapiens chromosome 11 clone RP11-46D24, complete sequence Length = 180973 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tcatccatcatcatcaccat 222 |||||||||||||||||||| Sbjct: 93413 tcatccatcatcatcaccat 93394
>gb|AC023389.13| Homo sapiens chromosome 17, clone RP11-82O19, complete sequence Length = 127918 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 278 tcatccatttatcttttgaacatatagt 305 ||||||||||||||||||| || ||||| Sbjct: 26850 tcatccatttatcttttgaccaaatagt 26823
>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence Length = 212599 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aaatcaacatcctcattgaa 250 |||||||||||||||||||| Sbjct: 115935 aaatcaacatcctcattgaa 115954
>dbj|AK065155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B19, full insert sequence Length = 2814 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 440 cttttggaaggttccaaatatatttcag 467 |||| |||||||||||||||| |||||| Sbjct: 1455 ctttcggaaggttccaaatatctttcag 1428
>gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10 of 73 of the complete sequence Length = 272100 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 catcttcattttcatctgca 526 |||||||||||||||||||| Sbjct: 220311 catcttcattttcatctgca 220292
>dbj|AP006295.1| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2555I5, complete sequence Length = 79000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tcatccatcatcatcaccat 222 |||||||||||||||||||| Sbjct: 46774 tcatccatcatcatcaccat 46755
>gb|AC117700.22| Mus musculus chromosome 15, clone RP23-455J20, complete sequence Length = 187994 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccatcatcatcaccatgatc 226 |||||||||||||||||||| Sbjct: 70127 ccatcatcatcaccatgatc 70146
>gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence Length = 163218 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tacttaaataaaactgaaat 203 |||||||||||||||||||| Sbjct: 114154 tacttaaataaaactgaaat 114135
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome Length = 892758 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 tcagcatcttcattttcatc 522 |||||||||||||||||||| Sbjct: 543484 tcagcatcttcattttcatc 543503
>gb|AC004283.1|AC004283 Drosophila melanogaster DNA sequence (P1 DS05557 (D152)), complete sequence Length = 80095 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 catcttcattttcatctgca 526 |||||||||||||||||||| Sbjct: 22437 catcttcattttcatctgca 22456
>emb|AL035605.1|ATF19F18 Arabidopsis thaliana DNA chromosome 4, BAC clone F19F18 (ESSA project) Length = 91740 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 ttcttcatcattagtagtta 572 |||||||||||||||||||| Sbjct: 40772 ttcttcatcattagtagtta 40753
>emb|AL929422.6| Mouse DNA sequence from clone RP24-234H23 on chromosome 4, complete sequence Length = 52881 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaatgttagattacaatattgg 34 |||||||||||||||| ||||||| Sbjct: 23548 aaaaatgttagattactatattgg 23571
>emb|AL671868.8| Mouse DNA sequence from clone RP23-140J12 on chromosome 4, complete sequence Length = 185825 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aaaaatgttagattacaata 30 |||||||||||||||||||| Sbjct: 7920 aaaaatgttagattacaata 7939
>gb|AC087510.7| Homo sapiens chromosome 17, clone RP11-104I20, complete sequence Length = 77732 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 278 tcatccatttatcttttgaacatatagt 305 ||||||||||||||||||| || ||||| Sbjct: 47568 tcatccatttatcttttgaccaaatagt 47541 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,778,775 Number of Sequences: 3902068 Number of extensions: 7778775 Number of successful extensions: 174438 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 174017 Number of HSP's gapped (non-prelim): 421 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
