ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCR_HUMAN (P08235) Mineralocorticoid receptor (MR) 30 3.9
2TROP_HUMAN (Q12816) Trophinin (MAGE-D3 antigen) 29 8.7

>MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)|
          Length = 984

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 473 GATPVAAPLASEESRSCSPQKGYAESKASRSRSPAIA 363
           G+ PV +P+      +CSP    AE++ SRS SPA A
Sbjct: 221 GSFPVHSPITQGTPLTCSPN---AENRGSRSHSPAHA 254



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>TROP_HUMAN (Q12816) Trophinin (MAGE-D3 antigen)|
          Length = 1387

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +2

Query: 209 YTIIPSTL--FTNIQSHQ--GTL*TIRCLMRLSAPWRRTSSMNCGCAHSFL*NASSQSQV 376
           + + PST   F+N  S    GTL T       S+ +   +S++ GCAHS   + SS++ +
Sbjct: 715 FGVAPSTSASFSNTASISFGGTLST-------SSSFSSAASISFGCAHSTSTSFSSEASI 767

Query: 377 TCCAMPCFQHILSAENSS 430
           +   MPC     S   SS
Sbjct: 768 SFGGMPCTSASFSGGVSS 785


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,199,783
Number of Sequences: 219361
Number of extensions: 1251189
Number of successful extensions: 3748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3747
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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