>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 42    atccccctttaatagtagagat 63
             ||||||||||||||||||||||
Sbjct: 66935 atccccctttaatagtagagat 66956



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 42    atccccctttaatagtagagat 63
             ||||||||||||||||||||||
Sbjct: 38794 atccccctttaatagtagagat 38773



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 42    atccccctttaatagtagagat 63
             ||||||||||||||||||||||
Sbjct: 20849 atccccctttaatagtagagat 20870

>emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in linkage group 10, complete
              sequence
          Length = 126112

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 369    aggatcaaatactgcatttcag 390
              ||||||||||||||||||||||
Sbjct: 123916 aggatcaaatactgcatttcag 123937

>ref|XM_465286.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 354

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 65  tagcacaaatgctcgtgggttgcaacggg 93
           ||||| ||||||||||| |||||||||||
Sbjct: 117 tagcaaaaatgctcgtgcgttgcaacggg 145

>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 65    tagcacaaatgctcgtgggttgcaacgggacaaaaat 101
             |||||||||| | |||| |||||||||||| ||||||
Sbjct: 14315 tagcacaaatacccgtgcgttgcaacgggagaaaaat 14351

>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0060K21, complete sequence
          Length = 153973

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 65    tagcacaaatgctcgtgggttgcaacggg 93
             ||||| ||||||||||| |||||||||||
Sbjct: 48639 tagcataaatgctcgtgcgttgcaacggg 48611

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 65       tagcacaaatgctcgtgggttgcaacggg 93
                ||||| ||||||||||| |||||||||||
Sbjct: 21166480 tagcataaatgctcgtgcgttgcaacggg 21166452

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 65      tagcacaaatgctcgtgggttgcaacggg 93
               ||||| ||||||||||| |||||||||||
Sbjct: 8605409 tagcaaaaatgctcgtgcgttgcaacggg 8605381



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 71       aaatgctcgtgggttgcaacggga 94
                ||||||||||| ||||||||||||
Sbjct: 21454991 aaatgctcgtgtgttgcaacggga 21455014

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 65       tagcacaaatgctcgtgggttgcaacggg 93
                ||||| ||||||||||| |||||||||||
Sbjct: 13082546 tagcaaaaatgctcgtgcgttgcaacggg 13082574



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 65       tagcacaaatgctcgtgggttgcaacgggacaaaaa 100
                ||||||| || ||||||  |||||||||||||||||
Sbjct: 10015906 tagcacatatactcgtgcattgcaacgggacaaaaa 10015871

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 65       tagcacaaatgctcgtgggttgcaacggg 93
                ||||| ||||||||||| |||||||||||
Sbjct: 18577680 tagcaaaaatgctcgtgtgttgcaacggg 18577652

>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1168H06
          Length = 185600

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 65     tagcacaaatgctcgtgggttgcaacggg 93
              ||||| ||||||||||| |||||||||||
Sbjct: 176897 tagcaaaaatgctcgtgtgttgcaacggg 176869

>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0516D04
          Length = 140491

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 65  tagcacaaatgctcgtgggttgcaacggg 93
           ||||| ||||||||||| |||||||||||
Sbjct: 953 tagcaaaaatgctcgtgtgttgcaacggg 925

>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 65     tagcacaaatgctcgtgggttgcaacggg 93
              ||||| ||||||||||| |||||||||||
Sbjct: 117320 tagcaaaaatgctcgtgcgttgcaacggg 117292

>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0476C12
          Length = 157570

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 65    tagcacaaatgctcgtgggttgcaacggg 93
             ||||| ||||||||||| |||||||||||
Sbjct: 59123 tagcaaaaatgctcgtgcgttgcaacggg 59151

>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0031C02
          Length = 138843

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 65     tagcacaaatgctcgtgggttgcaacggg 93
              ||||| ||||||||||| |||||||||||
Sbjct: 134952 tagcaaaaatgctcgtgcgttgcaacggg 134924

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 65       tagcacaaatgctcgtgggttgcaacggg 93
                ||||| ||||||||||| |||||||||||
Sbjct: 21476721 tagcataaatgctcgtgcgttgcaacggg 21476693

>gb|U29488.2| Caenorhabditis elegans cosmid C56C10, complete sequence
          Length = 35166

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   catttcagcaaaatgcatga 402
             ||||||||||||||||||||
Sbjct: 17578 catttcagcaaaatgcatga 17559

>gb|AC135108.3| Mus musculus BAC clone RP24-538P2 from chromosome 9, complete sequence
          Length = 137981

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   aacctaaatttgatcctaca 237
             ||||||||||||||||||||
Sbjct: 99748 aacctaaatttgatcctaca 99729

>emb|AL121987.34|HSBA536C5 Human DNA sequence from clone RP11-536C5 on chromosome 1q23.1-24.1
             Contains the 5' end of the KCNJ10 gene for potassium
             inwardly-rectifying channel subfamily J member 10, a novel
             gene, the KCNJ9 gene for potassium inwardly-rectifying
             channel subfamily J member 9, the IGSF8 gene for
             immunoglobulin superfamily member 8, the ATP1A2 gene for
             Na+/K+ transporting ATPase alpha 2 (+) polypeptide, the
             ATP1A4 gene for Na+/K+ transporting ATPase alpha 4 (+)
             polypeptide, the CASQ1 gene for calsequestrin 1
             (fast-twitch, skeletal muscle), a novel gene, the PEA15
             gene for phosphoprotein enriched in astrocytes 15 and four
             CpG islands, complete sequence
          Length = 170834

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   tgaacaagcagagaaactca 419
             ||||||||||||||||||||
Sbjct: 45074 tgaacaagcagagaaactca 45093

>emb|BX248332.14| Zebrafish DNA sequence from clone CH211-212O2 in linkage group 9,
              complete sequence
          Length = 237498

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    taaatttgatcctacatttt 241
              ||||||||||||||||||||
Sbjct: 228503 taaatttgatcctacatttt 228484

>ref|NM_062937.3| Caenorhabditis elegans C56C10.9 (C56C10.9) mRNA, complete cds
          Length = 1004

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 catttcagcaaaatgcatga 402
           ||||||||||||||||||||
Sbjct: 387 catttcagcaaaatgcatga 406

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      tgctcgtgggttgcaacggg 93
               ||||||||||||||||||||
Sbjct: 7363316 tgctcgtgggttgcaacggg 7363335

>gb|AF100773.1|AF100773 Hydra vulgaris tRNA-Met gene, complete sequence; l-ribosomal RNA
            gene, complete sequence; tRNA-Trp gene, complete
            sequence; cytochrome oxidase subunit II (COII) and ATP
            synthetase subunit 8 (ATPase8) genes, complete cds; and
            ATP synthetase subunit 6 (ATPase6) gene, partial cds,
            mitochondrial genes for mitochondrial products
          Length = 3016

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  tatatgataattattcttgt 204
            ||||||||||||||||||||
Sbjct: 2074 tatatgataattattcttgt 2093

>gb|AC131160.6| Homo sapiens 3 BAC RP11-449K6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 70958

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 361   atatccataggatcaaatactgca 384
             ||||||||||||| ||||||||||
Sbjct: 38280 atatccataggataaaatactgca 38257

>emb|BX842610.3| Mouse DNA sequence from clone RP24-16C11 on chromosome 4, complete
             sequence
          Length = 51549

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    acacatccccctttaatagt 57
             ||||||||||||||||||||
Sbjct: 31514 acacatccccctttaatagt 31533

>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0086N05
          Length = 163670

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tgctcgtgggttgcaacggg 93
             ||||||||||||||||||||
Sbjct: 89997 tgctcgtgggttgcaacggg 90016

>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0413A11
          Length = 188440

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 65    tagcacaaatgctcgtgggttgcaacgggacaaaaa 100
             ||||||| || ||||||  |||||||||||||||||
Sbjct: 90599 tagcacatatactcgtgcattgcaacgggacaaaaa 90564

>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0528B09
          Length = 156897

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    aaatgctcgtgggttgcaacggga 94
             ||||||||||| ||||||||||||
Sbjct: 58986 aaatgctcgtgtgttgcaacggga 59009

>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0524F03
          Length = 167696

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     aaatgctcgtgggttgcaacggga 94
              ||||||||||| ||||||||||||
Sbjct: 154916 aaatgctcgtgtgttgcaacggga 154939


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,568,096
Number of Sequences: 3902068
Number of extensions: 3568096
Number of successful extensions: 65091
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64769
Number of HSP's gapped (non-prelim): 322
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)