ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd0e05 |
|---|---|
| Clone Library Name | barley_pub |
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.6 kDa polypeptide) Length = 116 Score = 57.8 bits (138), Expect(3) = 2e-16 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -2 Query: 453 QNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQ 358 +NV FAGY+LPHPL+YKIIVRIHT SQSSP Q Sbjct: 54 ENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQ 85 Score = 40.4 bits (93), Expect(3) = 2e-16 Identities = 21/37 (56%), Positives = 26/37 (70%) Frame = -3 Query: 380 QANPPQRRAYTQAINDLDKELENLKQAFEDEKTRFES 270 Q++P Q AY QAINDLDKEL+ LK FE E +F + Sbjct: 80 QSSPMQ--AYNQAINDLDKELDYLKNQFEAEVAKFSN 114 Score = 25.8 bits (55), Expect(3) = 2e-16 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -1 Query: 487 GNILRMQLHRD 455 GNI+RMQLHRD Sbjct: 43 GNIVRMQLHRD 53
>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| Length = 117 Score = 45.8 bits (107), Expect = 6e-05 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = -2 Query: 450 NVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 NV FAGYKLPHPL++K ++RI T S+ SP Sbjct: 55 NVLFAGYKLPHPLEHKFVLRIQTTSEYSP 83
>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/31 (54%), Positives = 24/31 (77%) Frame = -2 Query: 450 NVHFAGYKLPHPLQYKIIVRIHTASQSSPTQ 358 NV FAGYK+PHPL++K ++RI T + SP + Sbjct: 55 NVLFAGYKVPHPLEHKFVIRIQTTADYSPQE 85
>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) (RPB14) Length = 117 Score = 42.4 bits (98), Expect = 7e-04 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQ 358 V FAGYK+PHPL++KII+R+ T SP + Sbjct: 56 VLFAGYKVPHPLEHKIIIRVQTTPDYSPQE 85
>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 42.4 bits (98), Expect = 7e-04 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQ 358 V FAGYK+PHPL++KII+R+ T SP + Sbjct: 56 VLFAGYKVPHPLEHKIIIRVQTTPDYSPQE 85
>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 40.4 bits (93), Expect(2) = 0.001 Identities = 16/32 (50%), Positives = 24/32 (75%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQGV 352 V FAGYK PHPL++KI++RI T + ++P + Sbjct: 55 VLFAGYKNPHPLEHKILLRIQTTNNTTPADAL 86 Score = 20.8 bits (42), Expect(2) = 0.001 Identities = 7/13 (53%), Positives = 12/13 (92%) Frame = -1 Query: 487 GNILRMQLHRDPK 449 GN+L++QL +DP+ Sbjct: 42 GNMLKIQLLKDPE 54
>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 39.7 bits (91), Expect(2) = 0.002 Identities = 15/32 (46%), Positives = 24/32 (75%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQGV 352 V FAGYK PHPL++KI++R+ T + ++P + Sbjct: 55 VLFAGYKNPHPLEHKILLRVQTTNATTPADAL 86 Score = 20.8 bits (42), Expect(2) = 0.002 Identities = 7/13 (53%), Positives = 12/13 (92%) Frame = -1 Query: 487 GNILRMQLHRDPK 449 GN+L++QL +DP+ Sbjct: 42 GNMLKIQLLKDPE 54
>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC| 2.7.7.6) Length = 123 Score = 40.0 bits (92), Expect = 0.003 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = -2 Query: 453 QNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQ 358 + V FAGYK+PHPL + I+R+ T SP Q Sbjct: 53 ERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQ 84
>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 144 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHT 382 V F GY +PHPL+ KI+ R+ T Sbjct: 86 VEFCGYNVPHPLEDKILFRVQT 107
>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 145 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHT 382 V F GY +PHPL+ KI+ R+ T Sbjct: 87 VEFCGYNVPHPLEDKILFRVQT 108
>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHTASQSSP 364 V FA Y PHPL KIIV+I T +P Sbjct: 38 VSFASYYQPHPLSDKIIVKILTDGSITP 65
>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide| (EC 2.7.7.6) Length = 125 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 447 VHFAGYKLPHPLQYKIIVRIHTASQSS 367 V F GY +PHP + K+ RI TA ++ Sbjct: 60 VEFCGYSIPHPSEAKMNFRIQTAPSTT 86
>INSRR_CAVPO (P14617) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) [Contains: Insulin receptor-related protein alpha chain; Insulin receptor-related protein beta chain] Length = 1300 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 416 PFSTRSLLGSILQANPPQRRAYTQAINDLDKEL 318 P + L+ S Q NP R +TQ +N + KEL Sbjct: 1218 PHQLQELMSSCWQQNPRLRPTFTQILNSIQKEL 1250
>TAZ_DROME (Q9V6G5) Tafazzin homolog| Length = 378 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 50 TPSRTCHSLTIQPHKSEQFN*QVYQVPTHV*RPYNL 157 TPS+T +S ++ P S+Q VPT V PYN+ Sbjct: 87 TPSQTLNSSSLPPPMSDQDADPSLDVPTGVAMPYNI 122
>RPOB_STRA5 (Q8E239) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1191 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -2 Query: 462 TGTQNVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 T T ++ F GY+L P RIH AS S+P Sbjct: 59 TDTMDLEFVGYELKEPKYTLEEARIHDASYSAP 91
>RPOB_STRA3 (Q8E7J8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1191 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -2 Query: 462 TGTQNVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 T T ++ F GY+L P RIH AS S+P Sbjct: 59 TDTMDLEFVGYELKEPKYTLEEARIHDASYSAP 91
>RPOB_STRA1 (Q3K3L2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1191 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -2 Query: 462 TGTQNVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 T T ++ F GY+L P RIH AS S+P Sbjct: 59 TDTMDLEFVGYELKEPKYTLEEARIHDASYSAP 91
>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 112 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -2 Query: 456 TQNVHFAGYKLPHPLQYKIIVRIHT 382 +Q+V F GY + HP + KI RI T Sbjct: 45 SQDVEFCGYSITHPSESKINFRIQT 69
>ZRAP_SHIFL (P0AAB1) Zinc resistance-associated protein precursor| Length = 141 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -3 Query: 389 SILQANPPQRRAYTQAINDLDKELENLKQAFEDEKTR 279 ++L ANPP + IN + KE+ENL+Q+ ++ + + Sbjct: 75 ALLAANPPD----SSKINAVAKEMENLRQSLDELRVK 107
>ZRAP_ECOLI (P0AAA9) Zinc resistance-associated protein precursor| Length = 141 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -3 Query: 389 SILQANPPQRRAYTQAINDLDKELENLKQAFEDEKTR 279 ++L ANPP + IN + KE+ENL+Q+ ++ + + Sbjct: 75 ALLAANPPD----SSKINAVAKEMENLRQSLDELRVK 107
>ZRAP_ECO57 (P0AAB0) Zinc resistance-associated protein precursor| Length = 141 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -3 Query: 389 SILQANPPQRRAYTQAINDLDKELENLKQAFEDEKTR 279 ++L ANPP + IN + KE+ENL+Q+ ++ + + Sbjct: 75 ALLAANPPD----SSKINAVAKEMENLRQSLDELRVK 107
>ZRAP_ECOL6 (Q8CVI9) Zinc resistance-associated protein precursor| Length = 139 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -3 Query: 389 SILQANPPQRRAYTQAINDLDKELENLKQAFEDEKTR 279 ++L ANPP + IN + KE+ENL+Q+ ++ + + Sbjct: 75 ALLAANPPD----SSKINAVAKEMENLRQSLDELRVK 107
>RPOB_STRT2 (Q5M2F5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 462 TGTQNVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 T T + F GY+L P RIH AS S+P Sbjct: 59 TDTMELEFVGYELKEPKYTLEEARIHDASYSAP 91
>RPOB_STRT1 (Q5LXV3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 462 TGTQNVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 T T + F GY+L P RIH AS S+P Sbjct: 59 TDTMELEFVGYELKEPKYTLEEARIHDASYSAP 91
>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide| (EC 2.7.7.6) (AC19) Length = 142 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -2 Query: 450 NVHFAGYKLPHPLQYKIIVRIHTASQSS 367 +V F GY +PHP + + +RI T +++ Sbjct: 85 DVEFCGYSIPHPSENLLNIRIQTYGETT 112
>XISA_ANASP (P08862) Excisase A (NifD element site-specific recombinase)| Length = 472 Score = 28.5 bits (62), Expect = 9.9 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -3 Query: 434 AISCLTPFSTR--SLLGSILQANPPQRRAYTQAINDLDKELENLKQA 300 A + L P S+ S LGS LQA + T+ + DLDK LK A Sbjct: 12 AFADLEPLSSTDGSFLGSSLQAQQQREHMRTKVLQDLDKVNLRLKSA 58
>CHS2_SCHPO (O74756) Chitin synthase-like protein 2| Length = 926 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -3 Query: 455 PKMFTLLAISCLTPFSTRSLLGSILQANPPQ 363 P + L I C TP R +LG +Q NP + Sbjct: 183 PLLCGSLTIDCPTPIDLRGMLGPFMQKNPDE 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,445,808 Number of Sequences: 219361 Number of extensions: 1283190 Number of successful extensions: 3691 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3691 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
