ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 90 1e-18
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 55 4e-08
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 47 9e-06
4SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 31 0.88
5YHGE_BACSU (P32399) Hypothetical protein yhgE (ORFB) 29 2.5
6TRX_DROME (P20659) Protein trithorax 27 9.7
7MURI2_THETN (Q8RC52) Glutamate racemase 2 (EC 5.1.1.3) 27 9.7

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 48/61 (78%), Positives = 51/61 (83%), Gaps = 2/61 (3%)
 Frame = -1

Query: 337 FTANEEVAVSAGSPRSVXXCFEGENVESGHPLVKEGKXNNLLAWRAXEDSLEE--GAVLC 164
           F ANEE+AVSAGSPRSV  CFE  NVESGHPLVKEGK  NLLAWRA E+SLEE  GA+LC
Sbjct: 335 FAANEELAVSAGSPRSVFHCFE--NVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLC 392

Query: 163 E 161
           E
Sbjct: 393 E 393



to top

>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 30/53 (56%), Positives = 36/53 (67%)
 Frame = -1

Query: 337 FTANEEVAVSAGSPRSVXXCFEGENVESGHPLVKEGKXNNLLAWRAXEDSLEE 179
           F A E+V V+ GSP+SV  CFE EN+ +  P VKEGK  NLL W   ED+LEE
Sbjct: 342 FDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKLGNLLPW--GEDALEE 391



to top

>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -1

Query: 337 FTANEEVAVSAGSPRSVXXCFEGENVESG-HPLVKEGKXNNLLAWRAXEDSLEEGA 173
           F A E+    A SP+SV  CF+GENVES   P+ K+ K  NLL W    D++EE A
Sbjct: 342 FCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395



to top

>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -1

Query: 328 NEEVAVSAG-SPRSVXXCFEGENVES------GHPLVKEGKXNNLLAWRAXEDSLEEGAV 170
           N E+A + G +P      F   N  S      G P+    +  N+ +W A +DS+ EGAV
Sbjct: 238 NREIARATGQTPTKQGGIFINPNAGSPNSSTPGSPVASVARQKNISSWLASQDSVPEGAV 297



to top

>YHGE_BACSU (P32399) Hypothetical protein yhgE (ORFB)|
          Length = 775

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 277 FEGENVESGHPLVKEGKXNNLLAWRAXED 191
           +EGE ++ G  LVKE K NN   W    D
Sbjct: 62  YEGEKLQIGDDLVKELKDNNNFDWHFSND 90



to top

>TRX_DROME (P20659) Protein trithorax|
          Length = 3726

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 241  VKEGKXNNLLAWRAXEDSLEEGAVLCE**DDFCCRCSVCGIRSDFRLSFWL 89
            V  G  + LL + + +D LEE A         C RC     RS++ +  WL
Sbjct: 3500 VSGGDSHGLLDYGSDQDELEENAY-------DCARCEPYSNRSEYDMFSWL 3543



to top

>MURI2_THETN (Q8RC52) Glutamate racemase 2 (EC 5.1.1.3)|
          Length = 264

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 247 PLVKEGKXNNLLAWRAXEDSLEE 179
           PL+++G  N+ LA++A +D LEE
Sbjct: 146 PLIEKGLYNSHLAYKAAKDCLEE 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,899,685
Number of Sequences: 219361
Number of extensions: 474251
Number of successful extensions: 1141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top