ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 355 6e-95
2gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 323 2e-85
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 8e-05
4emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de... 56 8e-05
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
6gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarbo... 56 8e-05
7dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
8dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
9dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
10dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
11dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
12emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 8e-05
13emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 56 8e-05
14gb|BT016840.1| Zea mays clone Contig673 mRNA sequence 48 0.018
15emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca... 48 0.018
16gb|AY103590.1| Zea mays PCO098412 mRNA sequence 48 0.018
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.072
18dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.072
19dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g... 46 0.072
20dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.072
21dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.072
22dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.072
23dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.072
24gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, compl... 42 1.1
25emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 4.5
26emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, ... 40 4.5 
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score =  355 bits (179), Expect = 6e-95
 Identities = 302/342 (88%), Gaps = 18/342 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    acagtacgctcattgtggcagacgcagcaaaccacctagagctaatagtttattcagagt 60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 acagtatgctcattgtggcagacgcagcaaaccacctagagctaatagtttattcagagt 1792

                                                                        
Query: 61   agcaatagcctggccggctgcttcacagtaaccaaaacgacaaacg---gaagtcagaac 117
            ||||||||||||||||||||||||||||||||| |||||||  |||     |||||||||
Sbjct: 1791 agcaatagcctggccggctgcttcacagtaacc-aaacgacgcacgacaacagtcagaac 1733

                                                                        
Query: 118  gaattccacagacggaacagcgacagcaaaaatcatcttatcactcgcacagcaccgc-- 175
            ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||  
Sbjct: 1732 gaattacacagacggaacagcgacagc--aaatcatcttatcactcgcacagcaacgcgc 1675

                                                                        
Query: 176  ----gccctcctccagagaatcctcctncgcccgccatgcgagcaggttgttttncttgc 231
                ||||||||| ||||| ||||||| ||||||||||||||||||||||     |||||
Sbjct: 1674 ctgtgccctcctcgagagactcctcctccgcccgccatgcgagcaggttggcaagcttgc 1615

                                                                        
Query: 232  cttccttgaccagagggtggccgctctccacattctcgccctcgaagcagcnnaagacgg 291
            ||||||||||||||||||||||||||||||||||      ||||||||||   ||||| |
Sbjct: 1614 cttccttgaccagagggtggccgctctccacatt------ctcgaagcagtggaagacag 1561

                                                      
Query: 292  acctgggcgacccggcggagacagcaacctcttcattcgcgg 333
            |||||||||||||||| |||||||||| |||||| |||||||
Sbjct: 1560 acctgggcgacccggcagagacagcaagctcttcgttcgcgg 1519
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>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score =  323 bits (163), Expect = 2e-85
 Identities = 275/308 (89%), Gaps = 8/308 (2%)
 Strand = Plus / Minus

                                                                        
Query: 31   accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 90
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320

                                                                        
Query: 91   accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaaaa 149
            |||||| |||||||| || ||||||||| ||||||||||| |||| ||||||||||||  
Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263

                                                                        
Query: 150  tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctncgcccgccat 209
            |||| |  |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203

                                                                        
Query: 210  gcgagcaggttgttttncttgccttccttgaccagagggtggccgctctccacattctcg 269
            ||||| ||||||     ||||||||||||||||||||||||   ||| | |||| |||||
Sbjct: 1202 gcgaggaggttggcgagcttgccttccttgaccagagggtg---gctgtgcacactctcg 1146

                                                                        
Query: 270  ccctcgaagcagcnnaagacggacctgggcgacccggcggagacagcaacctcttcattc 329
             |||||||||||   ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1145 gcctcgaagcagtggaagacggacctgggcgacccggcagagacagcaacctcttcgttc 1086

                    
Query: 330  gcggtaaa 337
             |||||||
Sbjct: 1085 acggtaaa 1078
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 8     gctcattgtggcagacgcagcaaaccacctagagct 43
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 64    aatagcctggccggctgcttcacag 88
             ||||||||||| |||||||||||||
Sbjct: 13782 aatagcctggctggctgcttcacag 13758
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>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
          Length = 2036

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1841 aatagcctggctggctgcttcacag 1817
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 8        gctcattgtggcagacgcagcaaaccacctagagct 43
                |||||||||||||||||||||  |||||||||||||
Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 64       aatagcctggccggctgcttcacag 88
                ||||||||||| |||||||||||||
Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
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>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds
          Length = 1560

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1392 aatagcctggctggctgcttcacag 1368
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>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
            insert sequence
          Length = 2063

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
            insert sequence
          Length = 2059

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
            insert sequence
          Length = 2711

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
            insert sequence
          Length = 2063

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full
            insert sequence
          Length = 1217

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   aatagcctggccggctgcttcacag 88
            ||||||||||| |||||||||||||
Sbjct: 1043 aatagcctggctggctgcttcacag 1019
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 8     gctcattgtggcagacgcagcaaaccacctagagct 43
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 64    aatagcctggccggctgcttcacag 88
             ||||||||||| |||||||||||||
Sbjct: 13810 aatagcctggctggctgcttcacag 13786
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 8      gctcattgtggcagacgcagcaaaccacctagagct 43
              |||||||||||||||||||||  |||||||||||||
Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 64     aatagcctggccggctgcttcacag 88
              ||||||||||| |||||||||||||
Sbjct: 154913 aatagcctggctggctgcttcacag 154889
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>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
          Length = 1866

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 8   gctcattgtggcagacgcagcaaaccacctagagct 43
           ||||||||||| |||||||||  |||||||||||||
Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144
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>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
          Length = 1873

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754
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>gb|AY103590.1| Zea mays PCO098412 mRNA sequence
          Length = 2400

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 8    gctcattgtggcagacgcagcaaaccacctagagct 43
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 16       tggcagacgcagcaaaccacctagagc 42
                ||||||||||||||||||| |||||||
Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 16     tggcagacgcagcaaaccacctagagc 42
              ||||||||||||||||||| |||||||
Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
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>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1  gene for
            S-adenosylmethionine decarboxylase, complete cds
          Length = 2952

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 16   tggcagacgcagcaaaccacctagagc 42
            ||||||||||||||||||| |||||||
Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
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>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
            insert sequence
          Length = 2047

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 16   tggcagacgcagcaaaccacctagagc 42
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
            insert sequence
          Length = 2002

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 16   tggcagacgcagcaaaccacctagagc 42
            ||||||||||||||||||| |||||||
Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
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>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
            insert sequence
          Length = 2546

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 16   tggcagacgcagcaaaccacctagagc 42
            ||||||||||||||||||| |||||||
Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
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>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
            insert sequence
          Length = 2034

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 16   tggcagacgcagcaaaccacctagagc 42
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>gb|AC125203.3| Mus musculus BAC clone RP23-233M21 from 19, complete sequence
          Length = 191540

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   tgccttccttgaccagagggt 249
             |||||||||||||||||||||
Sbjct: 51033 tgccttccttgaccagagggt 51053
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    ctgggcgacccggcggagac 313
              ||||||||||||||||||||
Sbjct: 276909 ctgggcgacccggcggagac 276890
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>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17
          Length = 24990

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tgcttcacagtaaccaaaac 98
             ||||||||||||||||||||
Sbjct: 19045 tgcttcacagtaaccaaaac 19064


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,175,289
Number of Sequences: 3902068
Number of extensions: 2175289
Number of successful extensions: 63531
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63453
Number of HSP's gapped (non-prelim): 71
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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