Clone Name | rbasd0d11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467558.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1454 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 1287 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 1228 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 1227 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 1186 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 1077 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 1021 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 1020 agcgacagggttgcaagcag 1001 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 1391 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1332 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 1331 gtgcacaaaacctagccctgttctgag 1305
>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA Length = 1611 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 1286 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 1227 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 1226 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 1185 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 1076 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 1020 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 1019 agcgacagggttgcaagcag 1000 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 1390 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1331 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 1330 gtgcacaaaacctagccctgttctgag 1304
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 30158781 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 30158837 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 30158838 agcgacagggttgcaagcag 30158857 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 30158571 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 30158630 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 30158631 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 30158672 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 30158467 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 30158526 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 30158527 gtgcacaaaacctagccctgttctgag 30158553
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 138378 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 138434 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 138435 agcgacagggttgcaagcag 138454 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 138168 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 138227 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 138228 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 138269 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 138064 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 138123 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 138124 gtgcacaaaacctagccctgttctgag 138150
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_G07 Length = 93240 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 31485 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 31541 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 31542 agcgacagggttgcaagcag 31561 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 31275 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 31334 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 31335 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 31376 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 31171 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 31230 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 31231 gtgcacaaaacctagccctgttctgag 31257
>dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full insert sequence Length = 1454 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 1287 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 1228 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 1227 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 1186 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 1077 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 1021 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 1020 agcgacagggttgcaagcag 1001 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 1391 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1332 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 1331 gtgcacaaaacctagccctgttctgag 1305
>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full insert sequence Length = 1611 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 233 cttgtagcacctgaaagcggcgaacgccgttgcagcagcggcaacaacagcaagagtggt 292 ||||||| |||||||||| ||||| ||| ||||||||| ||||||| | |||||| | Sbjct: 1286 cttgtagatcctgaaagcgacgaacaccgatgcagcagctgcaacaataccaagagcagc 1227 Query: 293 gtaggtgtcagacctgtcccaggtctcaaaccaggtgggcat 334 |||||||||| | | ||||| |||||||||||||| ||||| Sbjct: 1226 ataggtgtcagccgtttcccatgtctcaaaccaggttggcat 1185 Score = 67.9 bits (34), Expect = 4e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 449 tggcagatcactttggcagcaggttaaccctcctccattgccctggcagcatccacctgc 508 |||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||| Sbjct: 1076 tggcagatcactctggcagcaggtaaagcctcc---attgccctggcagcaaccacctgc 1020 Query: 509 aggtgtagggttgcaagcag 528 || |||||||||||||| Sbjct: 1019 agcgacagggttgcaagcag 1000 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 118 tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 177 |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || Sbjct: 1390 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1331 Query: 178 gtgcacaaaacctggccttgttttgag 204 ||||||||||||| ||| |||| |||| Sbjct: 1330 gtgcacaaaacctagccctgttctgag 1304
>gb|AY111756.1| Zea mays CL26659_-2 mRNA sequence Length = 669 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 278 aacagcaagagtggtgtaggtgtcagacctgtcccaggtctcaaaccaggtgggcatccg 337 ||||||||||| | |||||||||| || ||||||||||||||||||||||||||| | Sbjct: 375 aacagcaagagcagcataggtgtcagctctctcccaggtctcaaaccaggtgggcatcgg 434 Query: 338 gcaaatctt 346 |||| |||| Sbjct: 435 gcaagtctt 443
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 gggttgcaagcagcagcaccgt 537 |||||||||||||||||||||| Sbjct: 20715824 gggttgcaagcagcagcaccgt 20715803
>gb|AY190962.1| Drosophila willistoni clone DWIF01_6_P12 (D1474) genomic sequence Length = 41651 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 264 gcagcagcggcaacaacagcaa 285 |||||||||||||||||||||| Sbjct: 38303 gcagcagcggcaacaacagcaa 38282
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 gggttgcaagcagcagcaccgt 537 |||||||||||||||||||||| Sbjct: 88277 gggttgcaagcagcagcaccgt 88256
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 547 ttgcttcaggggattctttggc 568 |||||||||||||||||||||| Sbjct: 65856 ttgcttcaggggattctttggc 65835
>gb|AC012650.9| Drosophila melanogaster clone BACN24N09, complete sequence Length = 74083 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 cagcagcggcaacaacagcaa 285 ||||||||||||||||||||| Sbjct: 24027 cagcagcggcaacaacagcaa 24047
>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence Length = 168540 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagca 284 ||||||||||||||||||||| Sbjct: 115494 gcagcagcggcaacaacagca 115514
>gb|AF503449.1| Danio rerio TATA-binding protein (TBP) mRNA, complete cds Length = 1743 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagca 284 ||||||||||||||||||||| Sbjct: 296 gcagcagcggcaacaacagca 316
>gb|AY168633.1| Danio rerio TATA-binding protein (TBP) mRNA, complete cds Length = 1725 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagca 284 ||||||||||||||||||||| Sbjct: 294 gcagcagcggcaacaacagca 314
>gb|AC115986.3| Homo sapiens chromosome 18, clone RP11-112C14, complete sequence Length = 179590 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 tcctgttttgtttctggcaga 455 ||||||||||||||||||||| Sbjct: 154341 tcctgttttgtttctggcaga 154321
>gb|AC022743.7| Homo sapiens chromosome 18, clone RP11-789C7, complete sequence Length = 182466 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 tcctgttttgtttctggcaga 455 ||||||||||||||||||||| Sbjct: 120887 tcctgttttgtttctggcaga 120907
>ref|NM_134557.1| Drosophila melanogaster CG1379-RA (CG1379), mRNA Length = 1107 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 cagcagcggcaacaacagcaa 285 ||||||||||||||||||||| Sbjct: 504 cagcagcggcaacaacagcaa 524
>gb|AC161887.5| Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227751 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ctcctgtgcttctgctcagct 422 ||||||||||||||||||||| Sbjct: 26855 ctcctgtgcttctgctcagct 26835
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaaca 281 ||||||||||||||||||||| Sbjct: 73211 gttgcagcagcggcaacaaca 73231
>gb|AC007469.7|AC007469 Drosophila melanogaster, chromosome 3R, region 100D1-100F2, BAC clone BACR48C22, complete sequence Length = 181446 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaaca 281 ||||||||||||||||||||| Sbjct: 22846 gttgcagcagcggcaacaaca 22866
>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence Length = 128950 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 ttggttccatttgcttcaggg 557 ||||||||||||||||||||| Sbjct: 86333 ttggttccatttgcttcaggg 86353
>gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191856 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ctcctgtgcttctgctcagct 422 ||||||||||||||||||||| Sbjct: 95119 ctcctgtgcttctgctcagct 95099
>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the complete sequence Length = 232050 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaaca 281 ||||||||||||||||||||| Sbjct: 62118 gttgcagcagcggcaacaaca 62138
>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete sequence Length = 303641 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagca 284 ||||||||||||||||||||| Sbjct: 299203 gcagcagcggcaacaacagca 299223
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 cagcagcggcaacaacagcaa 285 ||||||||||||||||||||| Sbjct: 285241 cagcagcggcaacaacagcaa 285221
>dbj|AK116673.1| Ciona intestinalis cDNA, clone:cicl031p12, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 cagcagcggcaacaacagcaa 285 ||||||||||||||||||||| Sbjct: 192 cagcagcggcaacaacagcaa 212
>gb|AC003055.1|AC003055 Drosophila melanogaster (P1 DS06332 (D91)) DNA sequence, complete sequence Length = 73076 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 gcagcagcggcaacaacagca 284 ||||||||||||||||||||| Sbjct: 40261 gcagcagcggcaacaacagca 40241
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 gcagcagcggcaacaacagcaaga 287 |||||||||||||||||| ||||| Sbjct: 43867 gcagcagcggcaacaacaacaaga 43844
>gb|AC127306.3| Mus musculus BAC clone RP23-290H17 from chromosome 7, complete sequence Length = 204478 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 gtgcttctgctcagctggaa 426 |||||||||||||||||||| Sbjct: 92502 gtgcttctgctcagctggaa 92483
>gb|AC110262.12| Mus musculus chromosome 17, clone RP23-291L10, complete sequence Length = 210850 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gctcttgtcctgttttgttt 447 |||||||||||||||||||| Sbjct: 13612 gctcttgtcctgttttgttt 13631
>emb|CR790381.6| Zebrafish DNA sequence from clone DKEY-202K24 in linkage group 3, complete sequence Length = 93389 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gctcttgtcctgttttgttt 447 |||||||||||||||||||| Sbjct: 27409 gctcttgtcctgttttgttt 27390
>gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome 17, complete sequence Length = 220013 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gctcttgtcctgttttgttt 447 |||||||||||||||||||| Sbjct: 65008 gctcttgtcctgttttgttt 64989
>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence Length = 142834 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 gatcactttggcagcaggtt 473 |||||||||||||||||||| Sbjct: 59203 gatcactttggcagcaggtt 59184
>emb|AL590287.8| Human DNA sequence from clone RP11-378C6 on chromosome 13, complete sequence Length = 38013 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ttttgtttctggcagatcac 459 |||||||||||||||||||| Sbjct: 2003 ttttgtttctggcagatcac 2022
>ref|XM_502601.1| Yarrowia lipolytica CLIB122, YALI0D09042g predicted mRNA Length = 1386 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 agttcatggccttgtagcac 242 |||||||||||||||||||| Sbjct: 934 agttcatggccttgtagcac 915
>gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence Length = 270695 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ggtgtcagacctgtcccaggtctc 319 |||||||||||| ||||||||||| Sbjct: 242717 ggtgtcagacctttcccaggtctc 242740
>ref|XM_968841.1| PREDICTED: Tribolium castaneum similar to High mobility group protein DSP1 (Dorsal switch protein 1) (LOC662763), mRNA Length = 2682 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagcaaga 287 |||||||| ||||||||||||||| Sbjct: 1647 gcagcagcagcaacaacagcaaga 1670
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 564 ttggcgcttgattcttcctcagtt 587 |||||| ||||||||||||||||| Sbjct: 103312 ttggcgattgattcttcctcagtt 103289
>gb|AC055758.23| Homo sapiens 3 BAC RP11-88H10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173456 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aaatcagattgttttactgc 162 |||||||||||||||||||| Sbjct: 66527 aaatcagattgttttactgc 66546
>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence Length = 178736 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ttctttctaaagtcctaacc 105 |||||||||||||||||||| Sbjct: 71161 ttctttctaaagtcctaacc 71142
>gb|AC010017.5| Drosophila melanogaster 3L BAC RP98-2C22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182960 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 169110 gttgcagcagcagcaacaacagca 169133
>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163098 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 52555 gttgcagcagcagcaacaacagca 52578
>ref|NM_168237.1| Drosophila melanogaster PAR-domain protein 1 CG17888-RD, transcript variant D (Pdp1), mRNA Length = 4704 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cagcagcggcaacaacagca 284 |||||||||||||||||||| Sbjct: 922 cagcagcggcaacaacagca 941
>ref|NM_141028.1| Drosophila melanogaster CG12977-RA (CG12977), mRNA Length = 930 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 372 gttgcagcagcagcaacaacagca 395
>ref|NM_134961.1| Drosophila melanogaster CG10019-RA (CG10019), mRNA Length = 3396 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 2721 gttgcagcagcagcaacaacagca 2744
>dbj|AK137850.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130027I17 product:unclassifiable, full insert sequence Length = 2351 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gctcttgtcctgttttgttt 447 |||||||||||||||||||| Sbjct: 2183 gctcttgtcctgttttgttt 2202
>dbj|AK137778.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130006I09 product:unclassifiable, full insert sequence Length = 2352 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gctcttgtcctgttttgttt 447 |||||||||||||||||||| Sbjct: 2184 gctcttgtcctgttttgttt 2203
>gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174774 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 cagcagcggcaacaacagca 284 |||||||||||||||||||| Sbjct: 73691 cagcagcggcaacaacagca 73672
>gb|AY070526.1| Drosophila melanogaster GH27708 full length cDNA Length = 3095 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cagcagcggcaacaacagca 284 |||||||||||||||||||| Sbjct: 922 cagcagcggcaacaacagca 941
>gb|AC092240.1|AC092240 Drosophila melanogaster, chromosome 2L, region 24E-24F, BAC clone BACR06H02, complete sequence Length = 187707 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 44748 gttgcagcagcagcaacaacagca 44771
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagcaaga 287 |||||||||||||||||| ||||| Sbjct: 6842984 gcagcagcggcaacaacaacaaga 6843007
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagc 283 |||||||||||||||||||| Sbjct: 1980832 gcagcagcggcaacaacagc 1980851
>gb|AC154682.2| Mus musculus BAC clone RP24-315N18 from chromosome 14, complete sequence Length = 171851 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 ggtgtcagacctgtcccaggtctc 319 |||||||||||| ||||||||||| Sbjct: 123807 ggtgtcagacctttcccaggtctc 123784
>gb|BT024351.1| Drosophila melanogaster IP09244 full insert cDNA Length = 1307 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 528 gttgcagcagcagcaacaacagca 551
>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175504 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cttcatgcatcccttcttgc 363 |||||||||||||||||||| Sbjct: 82860 cttcatgcatcccttcttgc 82841
>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete sequence Length = 313157 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 232822 gttgcagcagcagcaacaacagca 232799
>gb|AE003578.3| Drosophila melanogaster chromosome 2L, section 13 of 83 of the complete sequence Length = 295211 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 14498 gttgcagcagcagcaacaacagca 14521
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 cagcagcggcaacaacagca 284 |||||||||||||||||||| Sbjct: 67843 cagcagcggcaacaacagca 67824
>dbj|AP005354.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1159C3, complete sequence Length = 133276 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ttctttctaaagtcctaacc 105 |||||||||||||||||||| Sbjct: 128472 ttctttctaaagtcctaacc 128491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 gcagcagcggcaacaacagcaaga 287 |||||||||||||||||| ||||| Sbjct: 6909451 gcagcagcggcaacaacaacaaga 6909474
>gb|AC005149.1|AC005149 Drosophila melanogaster DNA sequence (P1s DS03364 (D237) and DS02911 (D145)), complete sequence Length = 98942 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gttgcagcagcggcaacaacagca 284 ||||||||||| |||||||||||| Sbjct: 55474 gttgcagcagcagcaacaacagca 55497
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 agttcatggccttgtagcac 242 |||||||||||||||||||| Sbjct: 1150198 agttcatggccttgtagcac 1150217 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,044,931 Number of Sequences: 3902068 Number of extensions: 6044931 Number of successful extensions: 109948 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109640 Number of HSP's gapped (non-prelim): 294 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)