ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on... 42 1.7
2emb|Z81528.1|CEF35E2 Caenorhabditis elegans Cosmid F35E2, comple... 42 1.7
3gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete s... 42 1.7
4gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete se... 42 1.7
5gb|AY341029.1| Homo sapiens steroid-5-alpha-reductase, alpha pol... 42 1.7
6gb|BC105473.1| Bos taurus cDNA clone IMAGE:7988010, with apparen... 42 1.7
7gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, comp... 42 1.7
8emb|BX294124.8| Mouse DNA sequence from clone RP23-80H12 on chro... 42 1.7
9gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 40 6.8
10gb|AY362469.1| Valeriana officinalis NADH dehydrogenase subunit ... 40 6.8
11gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 40 6.8
12emb|AL136532.22| Human DNA sequence from clone RP11-379F14 on ch... 40 6.8
13emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chrom... 40 6.8
14gb|AC018861.9| Homo sapiens chromosome 8, clone RP11-577N1, comp... 40 6.8
15emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10,... 40 6.8
16emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, ... 40 6.8
17emb|CR626937.1| Human DNA sequence from clone XX-NCIH2171_3C16, ... 40 6.8
18gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell P... 40 6.8
19gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2... 40 6.8
20dbj|AB127931.1| Sphingomonas sp. A1 nadK gene for ATP-NAD kinase... 40 6.8
21gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, comple... 40 6.8
22emb|AL772346.5| Mouse DNA sequence from clone RP23-413E7 on chro... 40 6.8

>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete
             sequence
          Length = 100991

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   aaaatagagataccatgaaga 203
             |||||||||||||||||||||
Sbjct: 74383 aaaatagagataccatgaaga 74363



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>emb|Z81528.1|CEF35E2 Caenorhabditis elegans Cosmid F35E2, complete sequence
          Length = 37439

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   gcaaattaagcgtgtgacctt 360
             |||||||||||||||||||||
Sbjct: 29493 gcaaattaagcgtgtgacctt 29473



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>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence
          Length = 131577

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    aaaatagagataccatgaaga 203
              |||||||||||||||||||||
Sbjct: 129344 aaaatagagataccatgaaga 129364



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>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence
          Length = 100985

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   aaaatagagataccatgaaga 203
             |||||||||||||||||||||
Sbjct: 74386 aaaatagagataccatgaaga 74366



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>gb|AY341029.1| Homo sapiens steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5
             alpha-steroid delta 4-dehydrogenase alpha 1) (SRD5A1)
             gene, complete cds
          Length = 38399

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   tagagtcagggtggagactgg 124
             |||||||||||||||||||||
Sbjct: 14294 tagagtcagggtggagactgg 14274



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>gb|BC105473.1| Bos taurus cDNA clone IMAGE:7988010, with apparent retained intron
          Length = 2329

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  accttgtctctgcagttctgc 376
            |||||||||||||||||||||
Sbjct: 1245 accttgtctctgcagttctgc 1225



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>gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, complete sequence
          Length = 115396

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   tagagtcagggtggagactgg 124
             |||||||||||||||||||||
Sbjct: 73665 tagagtcagggtggagactgg 73645



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>emb|BX294124.8| Mouse DNA sequence from clone RP23-80H12 on chromosome X, complete
              sequence
          Length = 181854

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     cacttggataaaattgggtta 57
              |||||||||||||||||||||
Sbjct: 165314 cacttggataaaattgggtta 165334



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>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete
           sequence
          Length = 183478

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  aatgagtaatgcagaaccat 100
           ||||||||||||||||||||
Sbjct: 178 aatgagtaatgcagaaccat 159



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>gb|AY362469.1| Valeriana officinalis NADH dehydrogenase subunit F-like (ndhF) gene,
            partial sequence; chloroplast
          Length = 1995

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  atatctaacttcgttccctg 460
            ||||||||||||||||||||
Sbjct: 1687 atatctaacttcgttccctg 1668



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>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    gctcatgtgatgaacacttg 42
             ||||||||||||||||||||
Sbjct: 76389 gctcatgtgatgaacacttg 76408



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>emb|AL136532.22| Human DNA sequence from clone RP11-379F14 on chromosome 20 Contains the
             MRPS16P gene for mitochondrial ribosomal protein S16
             pseudogene, complete sequence
          Length = 94387

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tgcagaaccatatttagagt 109
             ||||||||||||||||||||
Sbjct: 62766 tgcagaaccatatttagagt 62747



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>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3'
             end of the gene for androgen induced protein (AIG-1)
             (CGI-103) (includes FLJ10485), a pseudogene similar to
             actin genes, a ribosomal protein L31 (RPL31) pseudogene
             and a pseudogene similar to hypothetical proteins PRO2207
             and similar to presenilins associated rhomboid-like
             protein, complete sequence
          Length = 100815

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   ccttgtctctgcagttctgc 376
             ||||||||||||||||||||
Sbjct: 21275 ccttgtctctgcagttctgc 21294



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>gb|AC018861.9| Homo sapiens chromosome 8, clone RP11-577N1, complete sequence
          Length = 187047

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cagctcatgtgatgaacact 40
             ||||||||||||||||||||
Sbjct: 68901 cagctcatgtgatgaacact 68882



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>emb|CR855999.1| Human DNA sequence from clone XX-NCIH2171_12H10, complete sequence
          Length = 116906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   cagctcatgtgatgaacact 40
            ||||||||||||||||||||
Sbjct: 1669 cagctcatgtgatgaacact 1688



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>emb|CR855280.1| Human DNA sequence from clone XX-NCIH2171_1M02, complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cagctcatgtgatgaacact 40
             ||||||||||||||||||||
Sbjct: 93613 cagctcatgtgatgaacact 93594



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>emb|CR626937.1| Human DNA sequence from clone XX-NCIH2171_3C16, complete sequence
          Length = 110843

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cagctcatgtgatgaacact 40
             ||||||||||||||||||||
Sbjct: 31548 cagctcatgtgatgaacact 31529



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>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 204318

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aatgagtaatgcagaaccat 100
             ||||||||||||||||||||
Sbjct: 99958 aatgagtaatgcagaaccat 99977



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>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence
          Length = 230827

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tgcagaaccatatttagagt 109
              ||||||||||||||||||||
Sbjct: 201898 tgcagaaccatatttagagt 201879



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>dbj|AB127931.1| Sphingomonas sp. A1 nadK gene for ATP-NAD kinase, complete cds
          Length = 897

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ccgacgacaatggccagatc 166
           ||||||||||||||||||||
Sbjct: 227 ccgacgacaatggccagatc 208



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>gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, complete sequence
          Length = 217668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aatgagtaatgcagaaccat 100
             ||||||||||||||||||||
Sbjct: 68580 aatgagtaatgcagaaccat 68599



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>emb|AL772346.5| Mouse DNA sequence from clone RP23-413E7 on chromosome 4, complete
              sequence
          Length = 189115

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    ctgcatctatccttaacaaa 300
              ||||||||||||||||||||
Sbjct: 143483 ctgcatctatccttaacaaa 143464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,411,376
Number of Sequences: 3902068
Number of extensions: 4411376
Number of successful extensions: 73262
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73232
Number of HSP's gapped (non-prelim): 30
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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