ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC ... 30 4.4
2YKI5_CAEEL (P46012) Hypothetical protein C01G6.5 29 7.6
3AKAP3_BOVIN (O77797) A-kinase anchor protein 3 (Protein kinase A... 28 9.9
4CR2_HUMAN (P20023) Complement receptor type 2 precursor (Cr2) (C... 28 9.9
5LYPA1_RAT (P70470) Acyl-protein thioesterase 1 (EC 3.1.2.-) (Lys... 28 9.9

>ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43)|
           (Trithorax-homolog protein 3) (TRX-homolog protein 3)
           (Protein SET DOMAIN GROUP 14)
          Length = 902

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 483 SAPGDWVNCGLCGEWAHFGCD 421
           S  GDWV C  C  W H  CD
Sbjct: 361 SDDGDWVCCDGCDVWVHAECD 381



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>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5|
          Length = 952

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 468 WVNCGLCGEWAHFGCDR 418
           WV+C +C +W H  C R
Sbjct: 886 WVSCSICNQWFHVWCVR 902



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>AKAP3_BOVIN (O77797) A-kinase anchor protein 3 (Protein kinase A-anchoring|
           protein 3) (PRKA3) (A-kinase anchor protein 110 kDa)
           (AKAP 110) (Fragment)
          Length = 854

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -3

Query: 458 VVYAANGLISAVIDGKGWALSRITRKTDGLEYICPHCSIANYKKKPPPPQKVTNGFANTV 279
           V + AN L + VI     A   I  K DG E  C H S+  Y    PPP K  +  A+ +
Sbjct: 127 VSFYANRLTNLVI---AMARKEINEKIDGSENRCVHQSV--YMGDEPPPNKSLSKVASEL 181

Query: 278 L 276
           +
Sbjct: 182 V 182



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>CR2_HUMAN (P20023) Complement receptor type 2 precursor (Cr2) (Complement C3d|
           receptor) (Epstein-Barr virus receptor) (EBV receptor)
           (CD21 antigen)
          Length = 1033

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 372 PICLSRNP*KCPALAVYHSRNEPIRRINHSSPNLQERY 485
           P C+S  P +CPAL + H+ +     +   +P L   Y
Sbjct: 144 PTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTY 181



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>LYPA1_RAT (P70470) Acyl-protein thioesterase 1 (EC 3.1.2.-)|
           (Lysophospholipase I)
          Length = 230

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = -3

Query: 458 VVYAANGLISAVI-------DGKGWALSRITRKTDGLEYICPHCSI 342
           VV AA    +AVI        G GWA +    K+  ++YICPH  +
Sbjct: 13  VVPAARKATAAVIFLHGLGDTGHGWAEAFAGIKSSHIKYICPHAPV 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,748,222
Number of Sequences: 219361
Number of extensions: 1319818
Number of successful extensions: 3057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3054
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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