ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.007
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
3gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
4dbj|AK063082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
5gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.44
6gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.44
7emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.44
8emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4,... 44 0.44
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
14dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
15dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
16emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.44
17emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 44 0.44
18emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.44
19gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome ... 42 1.7
20gb|AC148868.3| Pan troglodytes BAC clone CH251-126E24 from Y, co... 42 1.7
21gb|AY386696.1| Oryctolagus cuniculus clone 27N5, complete sequence 42 1.7
22gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequ... 42 1.7
23gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se... 42 1.7
24emb|AL133281.12| Human DNA sequence from clone RP11-252O2 on chr... 42 1.7
25gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.7
27gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 geno... 42 1.7
28gb|AC159110.2| Pan troglodytes BAC clone CH251-533A11 from chrom... 42 1.7
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
30dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
32gb|AC149094.4| Pan troglodytes BAC clone CH251-268E10 from chrom... 42 1.7
33gb|AC148874.4| Pan troglodytes BAC clone CH251-429C12 from chrom... 42 1.7
34gb|AC008529.4|AC008529 Homo sapiens chromosome 5 clone CTC-475P1... 42 1.7
35gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complet... 42 1.7
36dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
37dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
38dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
39dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
40emb|BX284681.4| Zebrafish DNA sequence from clone DKEY-197D18 in... 42 1.7
41emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 i... 42 1.7
42gb|AC159650.5| Pan troglodytes BAC clone CH251-379D1 from chromo... 42 1.7
43gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
44gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, co... 40 6.9
45ref|XM_463771.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
46gb|AC166902.2| Mus musculus BAC clone RP24-425L9 from chromosome... 40 6.9
47gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 6.9
48ref|XM_958352.1| Neurospora crassa OR74A glycerol-3-phosphate de... 40 6.9
49ref|XM_325308.1| Neurospora crassa OR74A glycerol-3-phosphate de... 40 6.9
50gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, compl... 40 6.9
51gb|AC002067.2| Homo sapiens BAC clone CTB-126M9 from 7, complete... 40 6.9
52gb|AC109247.14| Mus musculus chromosome 9, clone RP23-462C14, co... 40 6.9
53emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for seri... 40 6.9
54emb|AL442043.1|NCB11E6 Neurospora crassa DNA linkage group II BA... 40 6.9
55emb|AL355933.1|NCB8B20 Neurospora crassa DNA linkage group II BA... 40 6.9
56emb|AL390092.1|NCB2A19 Neurospora crassa DNA linkage group II BA... 40 6.9
57emb|AL662909.9| Mouse DNA sequence from clone RP23-189I13 on chr... 40 6.9
58emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 i... 40 6.9
59gb|AC078850.5| Homo sapiens BAC clone RP11-184M15 from 4, comple... 40 6.9
60gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, com... 40 6.9
61gb|AY828230.1| Allactaga major 4.5S RNA(H) gene, complete sequence 40 6.9
62dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
63gb|AF484941.1| Fusarium oxysporum class V chitin synthase (chsV)... 40 6.9
64dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
65dbj|AK068943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
66emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in ... 40 6.9
67emb|AL389899.1|NCB7J19 Neurospora crassa DNA linkage group II BA... 40 6.9
68emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in ... 40 6.9
69emb|AL928648.19| Mouse DNA sequence from clone RP23-379A6 on chr... 40 6.9
70dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
71emb|AL731706.14| Mouse DNA sequence from clone RP23-199B10 on ch... 40 6.9

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 465    atagcaacccagctagcatggcaccaggg 493
              ||||||||||||||||||| |||||||||
Sbjct: 686523 atagcaacccagctagcattgcaccaggg 686495



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 465    atagcaacccagctagcatggcaccaggg 493
              ||||||||||||||||||| |||||||||
Sbjct: 686521 atagcaacccagctagcattgcaccaggg 686493



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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 465   atagcaacccagctagcatggcaccaggg 493
             ||||||||||||||||||| |||||||||
Sbjct: 72404 atagcaacccagctagcattgcaccaggg 72376



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>dbj|AK063082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A04, full
           insert sequence
          Length = 892

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 465 atagcaacccagctagcatggcaccaggg 493
           ||||||||||||||||||| |||||||||
Sbjct: 462 atagcaacccagctagcattgcaccaggg 434



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>gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0118N20, complete sequence
          Length = 146139

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cttcttttttcttctcgatata 71
             ||||||||||||||||||||||
Sbjct: 54469 cttcttttttcttctcgatata 54448



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>gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone
            P0671E09, complete sequence
          Length = 158472

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 50   cttcttttttcttctcgatata 71
            ||||||||||||||||||||||
Sbjct: 5899 cttcttttttcttctcgatata 5878



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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cttcttttttcttctcgatata 71
             ||||||||||||||||||||||
Sbjct: 96842 cttcttttttcttctcgatata 96821



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>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23,
             complete sequence
          Length = 148736

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cttcttttttcttctcgatata 71
             ||||||||||||||||||||||
Sbjct: 44104 cttcttttttcttctcgatata 44083



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 50       cttcttttttcttctcgatata 71
                ||||||||||||||||||||||
Sbjct: 24976257 cttcttttttcttctcgatata 24976236



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 50       cttcttttttcttctcgatata 71
                ||||||||||||||||||||||
Sbjct: 24725957 cttcttttttcttctcgatata 24725978



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 50       cttcttttttcttctcgatata 71
                ||||||||||||||||||||||
Sbjct: 20797379 cttcttttttcttctcgatata 20797358



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 50       cttcttttttcttctcgatata 71
                ||||||||||||||||||||||
Sbjct: 13170490 cttcttttttcttctcgatata 13170511



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 50      cttcttttttcttctcgatata 71
               ||||||||||||||||||||||
Sbjct: 6875226 cttcttttttcttctcgatata 6875205



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 51       ttcttttttcttctcgatata 71
                |||||||||||||||||||||
Sbjct: 27106172 ttcttttttcttctcgatata 27106152



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 50       cttcttttttcttctcgatata 71
                ||||||||||||||||||||||
Sbjct: 13788397 cttcttttttcttctcgatata 13788376



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 50       cttcttttttcttctcgatata 71
                ||||||||||||||||||||||
Sbjct: 11719655 cttcttttttcttctcgatata 11719634



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>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1011A07
          Length = 150590

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cttcttttttcttctcgatata 71
             ||||||||||||||||||||||
Sbjct: 58823 cttcttttttcttctcgatata 58802



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>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0479H10
          Length = 139874

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    cttcttttttcttctcgatata 71
             ||||||||||||||||||||||
Sbjct: 64751 cttcttttttcttctcgatata 64730



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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
              sequence
          Length = 148644

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 50     cttcttttttcttctcgatata 71
              ||||||||||||||||||||||
Sbjct: 104306 cttcttttttcttctcgatata 104285



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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 50     cttcttttttcttctcgatata 71
              ||||||||||||||||||||||
Sbjct: 115480 cttcttttttcttctcgatata 115501



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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 50     cttcttttttcttctcgatata 71
              ||||||||||||||||||||||
Sbjct: 159693 cttcttttttcttctcgatata 159714



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>gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome 12, complete sequence
          Length = 184523

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 66    gatataaacacacacccacaagcac 90
             |||| ||||||||||||||||||||
Sbjct: 68629 gatacaaacacacacccacaagcac 68653



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>gb|AC148868.3| Pan troglodytes BAC clone CH251-126E24 from Y, complete sequence
          Length = 170533

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 73   acacacacccacaagcacaaaatgc 97
            |||||||||||||| ||||||||||
Sbjct: 9330 acacacacccacaaacacaaaatgc 9306



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>gb|AY386696.1| Oryctolagus cuniculus clone 27N5, complete sequence
          Length = 146676

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 363  tctggactggactggactggc 383
            |||||||||||||||||||||
Sbjct: 2527 tctggactggactggactggc 2547



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>gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequence
          Length = 137302

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 363    tctggactggactggactggc 383
              |||||||||||||||||||||
Sbjct: 106092 tctggactggactggactggc 106112



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>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     cacacacccacaagcacaaaa 94
              |||||||||||||||||||||
Sbjct: 133664 cacacacccacaagcacaaaa 133644



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>emb|AL133281.12| Human DNA sequence from clone RP11-252O2 on chromosome 9p22.1-22.3
             Contains part of the SLC24A2 gene for solute carrier
             family 24 (sodium/potassium/calcium exchanger), member 2
             (NCKX2) and a pseudogene similar to part of a novel gene,
             complete sequence
          Length = 158697

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 67    atataaacacacacccacaagcaca 91
             |||||||||||||| ||||||||||
Sbjct: 81346 atataaacacacacacacaagcaca 81370



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>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08,
              complete sequence
          Length = 180499

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     gcacaaaatgctacatatgtc 107
              |||||||||||||||||||||
Sbjct: 140143 gcacaaaatgctacatatgtc 140123



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 73       acacacacccacaagcacaaaatgc 97
                |||||||||||||| ||||||||||
Sbjct: 13103529 acacacacccacaaacacaaaatgc 13103505



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 73      acacacacccacaagcacaaaatgc 97
               |||||||||||||| ||||||||||
Sbjct: 4795936 acacacacccacaaacacaaaatgc 4795960



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 73      acacacacccacaagcacaaaatgc 97
               |||||||||||||| ||||||||||
Sbjct: 1140618 acacacacccacaaacacaaaatgc 1140642



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>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
             sequence
          Length = 178692

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    cttcttttttcttctcgatat 70
             |||||||||||||||||||||
Sbjct: 64837 cttcttttttcttctcgatat 64857



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>gb|AC159110.2| Pan troglodytes BAC clone CH251-533A11 from chromosome y, complete
              sequence
          Length = 174450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 73     acacacacccacaagcacaaaatgc 97
              |||||||||||||| ||||||||||
Sbjct: 170352 acacacacccacaaacacaaaatgc 170328



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 50       cttcttttttcttctcgatat 70
                |||||||||||||||||||||
Sbjct: 17609794 cttcttttttcttctcgatat 17609774



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 87      gcacaaaatgctacatatgtc 107
               |||||||||||||||||||||
Sbjct: 3858347 gcacaaaatgctacatatgtc 3858327



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 50       cttcttttttcttctcgatat 70
                |||||||||||||||||||||
Sbjct: 12016309 cttcttttttcttctcgatat 12016329



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 50      cttcttttttcttctcgatat 70
               |||||||||||||||||||||
Sbjct: 4414935 cttcttttttcttctcgatat 4414955



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>gb|AC149094.4| Pan troglodytes BAC clone CH251-268E10 from chromosome y, complete
              sequence
          Length = 175247

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 73     acacacacccacaagcacaaaatgc 97
              |||||||||||||| ||||||||||
Sbjct: 165905 acacacacccacaaacacaaaatgc 165929



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>gb|AC148874.4| Pan troglodytes BAC clone CH251-429C12 from chromosome y, complete
             sequence
          Length = 168193

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 73    acacacacccacaagcacaaaatgc 97
             |||||||||||||| ||||||||||
Sbjct: 69750 acacacacccacaaacacaaaatgc 69774



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>gb|AC008529.4|AC008529 Homo sapiens chromosome 5 clone CTC-475P15, complete sequence
          Length = 169557

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    ccttcttttttcttctcgata 69
             |||||||||||||||||||||
Sbjct: 85930 ccttcttttttcttctcgata 85950



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>gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complete sequence
          Length = 209156

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 432    tgctacttgtttgtttcaata 452
              |||||||||||||||||||||
Sbjct: 117237 tgctacttgtttgtttcaata 117217



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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0054L03
          Length = 183623

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     cttcttttttcttctcgatat 70
              |||||||||||||||||||||
Sbjct: 177729 cttcttttttcttctcgatat 177749



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>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0473H04
          Length = 155204

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    ttcttttttcttctcgatata 71
             |||||||||||||||||||||
Sbjct: 74982 ttcttttttcttctcgatata 74962



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>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0441A12
          Length = 185437

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     cttcttttttcttctcgatat 70
              |||||||||||||||||||||
Sbjct: 120789 cttcttttttcttctcgatat 120809



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>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    cttcttttttcttctcgatat 70
             |||||||||||||||||||||
Sbjct: 62111 cttcttttttcttctcgatat 62131



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>emb|BX284681.4| Zebrafish DNA sequence from clone DKEY-197D18 in linkage group 20,
             complete sequence
          Length = 96203

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 68    tataaacacacacccacaagcacaa 92
             ||||||||||||| |||||||||||
Sbjct: 78694 tataaacacacacacacaagcacaa 78670



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>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22,
              complete sequence
          Length = 237985

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 363    tctggactggactggactggc 383
              |||||||||||||||||||||
Sbjct: 207865 tctggactggactggactggc 207885



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>gb|AC159650.5| Pan troglodytes BAC clone CH251-379D1 from chromosome y, complete
             sequence
          Length = 214370

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 73    acacacacccacaagcacaaaatgc 97
             |||||||||||||| ||||||||||
Sbjct: 98507 acacacacccacaaacacaaaatgc 98483



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 50       cttcttttttcttctcgatat 70
                |||||||||||||||||||||
Sbjct: 17618834 cttcttttttcttctcgatat 17618814



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 87      gcacaaaatgctacatatgtc 107
               |||||||||||||||||||||
Sbjct: 3858268 gcacaaaatgctacatatgtc 3858248



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>gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 66    gatataaacacacacccacaagcacaaa 93
             |||||||||||| || ||||||||||||
Sbjct: 55858 gatataaacacatacacacaagcacaaa 55885



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>ref|XM_463771.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2411

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 ctggactggactggactggc 383
           ||||||||||||||||||||
Sbjct: 30  ctggactggactggactggc 11



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>gb|AC166902.2| Mus musculus BAC clone RP24-425L9 from chromosome 9, complete sequence
          Length = 184017

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     acacacacccacaagcacaaaatg 96
              |||||||| |||||||||||||||
Sbjct: 124550 acacacacacacaagcacaaaatg 124573



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    atcgacgcagccctcgccgc 276
              ||||||||||||||||||||
Sbjct: 551492 atcgacgcagccctcgccgc 551473



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>ref|XM_958352.1| Neurospora crassa OR74A glycerol-3-phosphate dehydrogenase precursor
            related protein [MIPS] (NCU05454.1) partial mRNA
          Length = 2211

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  ctggactggactggactggc 383
            ||||||||||||||||||||
Sbjct: 2119 ctggactggactggactggc 2138



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>ref|XM_325308.1| Neurospora crassa OR74A glycerol-3-phosphate dehydrogenase precursor
            related protein [MIPS] (NCU05454.1) partial mRNA
          Length = 2211

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  ctggactggactggactggc 383
            ||||||||||||||||||||
Sbjct: 2119 ctggactggactggactggc 2138



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>gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, complete sequence
          Length = 195459

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   ctccgccagcccttcctgcc 309
             ||||||||||||||||||||
Sbjct: 29814 ctccgccagcccttcctgcc 29795



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>gb|AC002067.2| Homo sapiens BAC clone CTB-126M9 from 7, complete sequence
          Length = 162912

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  ctccgccagcccttcctgcc 309
            ||||||||||||||||||||
Sbjct: 3217 ctccgccagcccttcctgcc 3198



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>gb|AC109247.14| Mus musculus chromosome 9, clone RP23-462C14, complete sequence
          Length = 225020

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     gatataaacacacacccaca 85
              ||||||||||||||||||||
Sbjct: 110327 gatataaacacacacccaca 110346



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>emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-3
          Length = 1979

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 ctggactggactggactggc 383
           ||||||||||||||||||||
Sbjct: 21  ctggactggactggactggc 2



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>emb|AL442043.1|NCB11E6 Neurospora crassa DNA linkage group II BAC clone B11E6
          Length = 69943

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 20852 ctggactggactggactggc 20871



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>emb|AL355933.1|NCB8B20 Neurospora crassa DNA linkage group II BAC clone B8B20
          Length = 86476

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 21023 ctggactggactggactggc 21042



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>emb|AL390092.1|NCB2A19 Neurospora crassa DNA linkage group II BAC clone B2A19
          Length = 72788

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 71362 ctggactggactggactggc 71381



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>emb|AL662909.9| Mouse DNA sequence from clone RP23-189I13 on chromosome 11 Contains the
              5' end of the Odz2 gene for odd Oz/ten-m homolog 2
              (Drosophila) and a CpG island, complete sequence
          Length = 201564

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cacacacccacaagcacaaa 93
              ||||||||||||||||||||
Sbjct: 112936 cacacacccacaagcacaaa 112917



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>emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 in linkage group 20
              Contains the gene for a novel protein similar to vertebrate
              delta-like 4 (Drosophila) (DLL4), the vps18 gene for
              vacuolar protein sorting protein 18, the gene for a novel
              protein containing an SNF2 family N-terminal domain and a
              Helicase conserved C-terminal domain, the gene for a novel
              protein similar to vertebrate ras homolog gene family,
              member V (RHOV), the gene for a novel protein containing a
              ChaC-like protein domain and three CpG islands, complete
              sequence
          Length = 170125

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ttttttcttctcgatataaa 73
              ||||||||||||||||||||
Sbjct: 167676 ttttttcttctcgatataaa 167695



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>gb|AC078850.5| Homo sapiens BAC clone RP11-184M15 from 4, complete sequence
          Length = 180194

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    cacacacccacaagcacaaa 93
             ||||||||||||||||||||
Sbjct: 28248 cacacacccacaagcacaaa 28229



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>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence
          Length = 177717

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tacatctcaagccaaggaac 205
             ||||||||||||||||||||
Sbjct: 34605 tacatctcaagccaaggaac 34586



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>gb|AY828230.1| Allactaga major 4.5S RNA(H) gene, complete sequence
          Length = 3969

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   aaacacacacccacaagcac 90
            ||||||||||||||||||||
Sbjct: 3063 aaacacacacccacaagcac 3044



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 34290 ctggactggactggactggc 34271



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>gb|AF484941.1| Fusarium oxysporum class V chitin synthase (chsV) gene, complete cds
          Length = 10151

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  ctggactggactggactggc 383
            ||||||||||||||||||||
Sbjct: 2103 ctggactggactggactggc 2084



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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 28899 ctggactggactggactggc 28880



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>dbj|AK068943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170D03, full
           insert sequence
          Length = 2411

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 ctggactggactggactggc 383
           ||||||||||||||||||||
Sbjct: 30  ctggactggactggactggc 11



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>emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in linkage group 20,
              complete sequence
          Length = 223182

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ttttttcttctcgatataaa 73
              ||||||||||||||||||||
Sbjct: 174915 ttttttcttctcgatataaa 174934



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>emb|AL389899.1|NCB7J19 Neurospora crassa DNA linkage group II BAC clone B7J19
          Length = 57906

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  ctggactggactggactggc 383
            ||||||||||||||||||||
Sbjct: 1448 ctggactggactggactggc 1429



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>emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in linkage group 15,
             complete sequence
          Length = 107420

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 71183 ctggactggactggactggc 71164



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>emb|AL928648.19| Mouse DNA sequence from clone RP23-379A6 on chromosome 4, complete
            sequence
          Length = 90837

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tctggactggactggactgg 382
            ||||||||||||||||||||
Sbjct: 5347 tctggactggactggactgg 5366



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>dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             fosmid clone:OSJNOa183H18
          Length = 38313

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   ctggactggactggactggc 383
             ||||||||||||||||||||
Sbjct: 34290 ctggactggactggactggc 34271



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>emb|AL731706.14| Mouse DNA sequence from clone RP23-199B10 on chromosome 2, complete
              sequence
          Length = 195301

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 358    aagcttctggactggactggactg 381
              ||||| ||||||||||||||||||
Sbjct: 160774 aagctactggactggactggactg 160797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,200,214
Number of Sequences: 3902068
Number of extensions: 4200214
Number of successful extensions: 97549
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96811
Number of HSP's gapped (non-prelim): 712
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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