ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U44802.1|ASU44802 Avena sativa host response mRNA, partial 5'UTR 58 3e-05
2ref|XM_493928.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
3gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
4gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.6
7gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence 42 1.6
8ref|XM_799945.1| Trypanosoma cruzi strain CL Brener trans-sialid... 42 1.6
9ref|XM_804633.1| Trypanosoma cruzi strain CL Brener trans-sialid... 42 1.6
10ref|XM_815093.1| Trypanosoma cruzi strain CL Brener trans-sialid... 42 1.6
11gb|AC015967.8| Homo sapiens chromosome 18, clone RP11-294N21, co... 42 1.6
12ref|XM_572161.1| Cryptococcus neoformans var. neoformans JEC21 c... 42 1.6
13gb|AC009277.4|AC009277 Homo sapiens chromosome 18, clone RP11-48... 42 1.6
14emb|CR556710.7| Zebrafish DNA sequence from clone CH211-132E22 i... 42 1.6
15emb|AL844866.17| Mouse DNA sequence from clone RP23-418O17 on ch... 42 1.6
16gb|AY612686.1| Todea barbara ribulose 1,5-bisphosphate carboxyla... 40 6.1
17gb|AY612678.1| Leptopteris wilkesiana ribulose 1,5-bisphosphate ... 40 6.1
18gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 6.1
19gb|AC133649.2| Mus musculus BAC clone RP23-341M13 from chromosom... 40 6.1
20gb|AC132099.3| Mus musculus BAC clone RP24-292F6 from chromosome... 40 6.1
21emb|AL359394.9| Human DNA sequence from clone RP11-264M20 on chr... 40 6.1
22gb|AC111193.5| Homo sapiens BAC clone RP11-397D21 from 4, comple... 40 6.1
23gb|AC110620.3| Homo sapiens BAC clone RP11-683I7 from 2, complet... 40 6.1
24emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on ch... 40 6.1
25dbj|AB024959.1| Todea barbara chloroplast rbcL gene for large su... 40 6.1
26dbj|AB024958.1| Leptopteris wilksiana chloroplast rbcL gene for ... 40 6.1
27dbj|AB024957.1| Leptopteris hymenophylloides chloroplast rbcL ge... 40 6.1
28gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 6.1
29dbj|AB076260.1| Todea barbara rbcL gene for ribulose 1,5-bisphos... 40 6.1 
>gb|U44802.1|ASU44802 Avena sativa host response mRNA, partial 5'UTR
          Length = 110

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 410 cttagcaccatcaagcacggcagagttgtacttggctgagagctg 454
           |||||| ||||| | ||| ||||||||||||||||||||||||||
Sbjct: 110 cttagccccatcgatcacagcagagttgtacttggctgagagctg 66
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>ref|XM_493928.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 690

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 362 gcgctccgtggggacgagtgggaggtaggtggcgac 397
           |||||| ||||||||||| |||||||||||||||||
Sbjct: 609 gcgctcggtggggacgagcgggaggtaggtggcgac 574



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 281 ttactgcgtcgggatgggctgcatctc 307
           |||||||| ||||||||||||||||||
Sbjct: 690 ttactgcgacgggatgggctgcatctc 664
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>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
              complete sequence
          Length = 164898

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 362    gcgctccgtggggacgagtgggaggtaggtggcgac 397
              |||||| ||||||||||| |||||||||||||||||
Sbjct: 105463 gcgctcggtggggacgagcgggaggtaggtggcgac 105498



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 281    ttactgcgtcgggatgggctgcatctc 307
              |||||||| ||||||||||||||||||
Sbjct: 105382 ttactgcgacgggatgggctgcatctc 105408
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>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0072C16, complete sequence
          Length = 159525

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 362  gcgctccgtggggacgagtgggaggtaggtggcgac 397
            |||||| ||||||||||| |||||||||||||||||
Sbjct: 4868 gcgctcggtggggacgagcgggaggtaggtggcgac 4903



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 281  ttactgcgtcgggatgggctgcatctc 307
            |||||||| ||||||||||||||||||
Sbjct: 4787 ttactgcgacgggatgggctgcatctc 4813
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 362     gcgctccgtggggacgagtgggaggtaggtggcgac 397
               |||||| ||||||||||| |||||||||||||||||
Sbjct: 2910852 gcgctcggtggggacgagcgggaggtaggtggcgac 2910887



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 281     ttactgcgtcgggatgggctgcatctc 307
               |||||||| ||||||||||||||||||
Sbjct: 2910771 ttactgcgacgggatgggctgcatctc 2910797
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 185     ataataccactatccaccaca 205
               |||||||||||||||||||||
Sbjct: 1159062 ataataccactatccaccaca 1159042
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>gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence
          Length = 163897

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     cagtggttcatgcagaacaaa 97
              |||||||||||||||||||||
Sbjct: 112071 cagtggttcatgcagaacaaa 112051
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>ref|XM_799945.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053504341.10) partial mRNA
          Length = 2784

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 358  cgatgcgctccgtggggacgagtgggagg 386
            |||| |||||||||||||| |||||||||
Sbjct: 1470 cgatacgctccgtggggacaagtgggagg 1498
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>ref|XM_804633.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053507997.14) partial mRNA
          Length = 1695

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 358  cgatgcgctccgtggggacgagtgggagg 386
            |||| |||||||||||||| |||||||||
Sbjct: 1470 cgatacgctccgtggggacaagtgggagg 1498
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>ref|XM_815093.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053510307.284) partial mRNA
          Length = 3402

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 358  cgatgcgctccgtggggacgagtgggagg 386
            |||| |||||||||||||| |||||||||
Sbjct: 1470 cgatacgctccgtggggacaagtgggagg 1498
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>gb|AC015967.8| Homo sapiens chromosome 18, clone RP11-294N21, complete sequence
          Length = 186726

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 123    cacagcagcagcattcagagtcgcc 147
              ||||||||||||||||| |||||||
Sbjct: 185067 cacagcagcagcattcacagtcgcc 185043
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>ref|XM_572161.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 1558

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 185  ataataccactatccaccaca 205
            |||||||||||||||||||||
Sbjct: 1429 ataataccactatccaccaca 1409
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>gb|AC009277.4|AC009277 Homo sapiens chromosome 18, clone RP11-481E24, complete sequence
          Length = 160401

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 123   cacagcagcagcattcagagtcgcc 147
             ||||||||||||||||| |||||||
Sbjct: 13189 cacagcagcagcattcacagtcgcc 13165
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>emb|CR556710.7| Zebrafish DNA sequence from clone CH211-132E22 in linkage group 13,
             complete sequence
          Length = 97211

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    cagtggttcatgcagaacaaa 97
             |||||||||||||||||||||
Sbjct: 20386 cagtggttcatgcagaacaaa 20406
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>emb|AL844866.17| Mouse DNA sequence from clone RP23-418O17 on chromosome X, complete
              sequence
          Length = 173461

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     gcataaacagaatgaatttac 36
              |||||||||||||||||||||
Sbjct: 117559 gcataaacagaatgaatttac 117539
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>gb|AY612686.1| Todea barbara ribulose 1,5-bisphosphate carboxylase/oxygenase large
           subunit (rbcL) gene, partial cds; chloroplast
          Length = 1320

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gtttggattcaaagcattac 73
           ||||||||||||||||||||
Sbjct: 341 gtttggattcaaagcattac 360
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>gb|AY612678.1| Leptopteris wilkesiana ribulose 1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds; chloroplast
          Length = 1322

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gtttggattcaaagcattac 73
           ||||||||||||||||||||
Sbjct: 342 gtttggattcaaagcattac 361
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     aaactattaagtaacataac 262
               ||||||||||||||||||||
Sbjct: 3513300 aaactattaagtaacataac 3513319
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>gb|AC133649.2| Mus musculus BAC clone RP23-341M13 from chromosome 19, complete
             sequence
          Length = 187971

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gtaactcttactgttactgc 287
             ||||||||||||||||||||
Sbjct: 86731 gtaactcttactgttactgc 86750
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>gb|AC132099.3| Mus musculus BAC clone RP24-292F6 from chromosome 16, complete sequence
          Length = 160650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gattcaaagcattacacaca 78
             ||||||||||||||||||||
Sbjct: 76876 gattcaaagcattacacaca 76857
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>emb|AL359394.9| Human DNA sequence from clone RP11-264M20 on chromosome 13 Contains a
              novel pseudogene, complete sequence
          Length = 137246

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ataaacagaatgaatttaca 37
              ||||||||||||||||||||
Sbjct: 135241 ataaacagaatgaatttaca 135222
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>gb|AC111193.5| Homo sapiens BAC clone RP11-397D21 from 4, complete sequence
          Length = 73175

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    atgaatttacagatggtgtttcat 50
             |||||||||||| |||||||||||
Sbjct: 59646 atgaatttacaggtggtgtttcat 59623
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>gb|AC110620.3| Homo sapiens BAC clone RP11-683I7 from 2, complete sequence
          Length = 142234

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   ctgcatctctggagctgtgg 318
             ||||||||||||||||||||
Sbjct: 34091 ctgcatctctggagctgtgg 34072
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>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
             sequence
          Length = 167407

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    caaagcattacacacagtggttca 86
             ||||||||||||||| ||||||||
Sbjct: 57592 caaagcattacacactgtggttca 57615
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>dbj|AB024959.1| Todea barbara chloroplast rbcL gene for large subunit of
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gtttggattcaaagcattac 73
           ||||||||||||||||||||
Sbjct: 307 gtttggattcaaagcattac 326
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>dbj|AB024958.1| Leptopteris wilksiana chloroplast rbcL gene for large subunit of
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gtttggattcaaagcattac 73
           ||||||||||||||||||||
Sbjct: 307 gtttggattcaaagcattac 326
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>dbj|AB024957.1| Leptopteris hymenophylloides chloroplast rbcL gene for large
           subunit of ribulose-1,5-bisphosphate
           carboxylase/oxygenase, partial cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gtttggattcaaagcattac 73
           ||||||||||||||||||||
Sbjct: 307 gtttggattcaaagcattac 326
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>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete
             sequence
          Length = 196933

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   acagcagcagcattcagagt 143
             ||||||||||||||||||||
Sbjct: 63372 acagcagcagcattcagagt 63353
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>dbj|AB076260.1| Todea barbara rbcL gene for ribulose 1,5-bisphosphate carboxylase
           large subunit, partial cds
          Length = 1227

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gtttggattcaaagcattac 73
           ||||||||||||||||||||
Sbjct: 303 gtttggattcaaagcattac 322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,123,992
Number of Sequences: 3902068
Number of extensions: 4123992
Number of successful extensions: 74555
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74474
Number of HSP's gapped (non-prelim): 81
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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