Clone Name | rbasd0d01 |
---|---|
Clone Library Name | barley_pub |
>gb|U44802.1|ASU44802 Avena sativa host response mRNA, partial 5'UTR Length = 110 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 410 cttagcaccatcaagcacggcagagttgtacttggctgagagctg 454 |||||| ||||| | ||| |||||||||||||||||||||||||| Sbjct: 110 cttagccccatcgatcacagcagagttgtacttggctgagagctg 66
>ref|XM_493928.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 690 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 362 gcgctccgtggggacgagtgggaggtaggtggcgac 397 |||||| ||||||||||| ||||||||||||||||| Sbjct: 609 gcgctcggtggggacgagcgggaggtaggtggcgac 574 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 281 ttactgcgtcgggatgggctgcatctc 307 |||||||| |||||||||||||||||| Sbjct: 690 ttactgcgacgggatgggctgcatctc 664
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07, complete sequence Length = 164898 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 362 gcgctccgtggggacgagtgggaggtaggtggcgac 397 |||||| ||||||||||| ||||||||||||||||| Sbjct: 105463 gcgctcggtggggacgagcgggaggtaggtggcgac 105498 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 281 ttactgcgtcgggatgggctgcatctc 307 |||||||| |||||||||||||||||| Sbjct: 105382 ttactgcgacgggatgggctgcatctc 105408
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 362 gcgctccgtggggacgagtgggaggtaggtggcgac 397 |||||| ||||||||||| ||||||||||||||||| Sbjct: 4868 gcgctcggtggggacgagcgggaggtaggtggcgac 4903 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 281 ttactgcgtcgggatgggctgcatctc 307 |||||||| |||||||||||||||||| Sbjct: 4787 ttactgcgacgggatgggctgcatctc 4813
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 362 gcgctccgtggggacgagtgggaggtaggtggcgac 397 |||||| ||||||||||| ||||||||||||||||| Sbjct: 2910852 gcgctcggtggggacgagcgggaggtaggtggcgac 2910887 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 281 ttactgcgtcgggatgggctgcatctc 307 |||||||| |||||||||||||||||| Sbjct: 2910771 ttactgcgacgggatgggctgcatctc 2910797
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 ataataccactatccaccaca 205 ||||||||||||||||||||| Sbjct: 1159062 ataataccactatccaccaca 1159042
>gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence Length = 163897 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 cagtggttcatgcagaacaaa 97 ||||||||||||||||||||| Sbjct: 112071 cagtggttcatgcagaacaaa 112051
>ref|XM_799945.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053504341.10) partial mRNA Length = 2784 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 358 cgatgcgctccgtggggacgagtgggagg 386 |||| |||||||||||||| ||||||||| Sbjct: 1470 cgatacgctccgtggggacaagtgggagg 1498
>ref|XM_804633.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053507997.14) partial mRNA Length = 1695 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 358 cgatgcgctccgtggggacgagtgggagg 386 |||| |||||||||||||| ||||||||| Sbjct: 1470 cgatacgctccgtggggacaagtgggagg 1498
>ref|XM_815093.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053510307.284) partial mRNA Length = 3402 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 358 cgatgcgctccgtggggacgagtgggagg 386 |||| |||||||||||||| ||||||||| Sbjct: 1470 cgatacgctccgtggggacaagtgggagg 1498
>gb|AC015967.8| Homo sapiens chromosome 18, clone RP11-294N21, complete sequence Length = 186726 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 cacagcagcagcattcagagtcgcc 147 ||||||||||||||||| ||||||| Sbjct: 185067 cacagcagcagcattcacagtcgcc 185043
>ref|XM_572161.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 1558 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 ataataccactatccaccaca 205 ||||||||||||||||||||| Sbjct: 1429 ataataccactatccaccaca 1409
>gb|AC009277.4|AC009277 Homo sapiens chromosome 18, clone RP11-481E24, complete sequence Length = 160401 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 cacagcagcagcattcagagtcgcc 147 ||||||||||||||||| ||||||| Sbjct: 13189 cacagcagcagcattcacagtcgcc 13165
>emb|CR556710.7| Zebrafish DNA sequence from clone CH211-132E22 in linkage group 13, complete sequence Length = 97211 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 cagtggttcatgcagaacaaa 97 ||||||||||||||||||||| Sbjct: 20386 cagtggttcatgcagaacaaa 20406
>emb|AL844866.17| Mouse DNA sequence from clone RP23-418O17 on chromosome X, complete sequence Length = 173461 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 gcataaacagaatgaatttac 36 ||||||||||||||||||||| Sbjct: 117559 gcataaacagaatgaatttac 117539
>gb|AY612686.1| Todea barbara ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast Length = 1320 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttggattcaaagcattac 73 |||||||||||||||||||| Sbjct: 341 gtttggattcaaagcattac 360
>gb|AY612678.1| Leptopteris wilkesiana ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast Length = 1322 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttggattcaaagcattac 73 |||||||||||||||||||| Sbjct: 342 gtttggattcaaagcattac 361
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 aaactattaagtaacataac 262 |||||||||||||||||||| Sbjct: 3513300 aaactattaagtaacataac 3513319
>gb|AC133649.2| Mus musculus BAC clone RP23-341M13 from chromosome 19, complete sequence Length = 187971 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gtaactcttactgttactgc 287 |||||||||||||||||||| Sbjct: 86731 gtaactcttactgttactgc 86750
>gb|AC132099.3| Mus musculus BAC clone RP24-292F6 from chromosome 16, complete sequence Length = 160650 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 gattcaaagcattacacaca 78 |||||||||||||||||||| Sbjct: 76876 gattcaaagcattacacaca 76857
>emb|AL359394.9| Human DNA sequence from clone RP11-264M20 on chromosome 13 Contains a novel pseudogene, complete sequence Length = 137246 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ataaacagaatgaatttaca 37 |||||||||||||||||||| Sbjct: 135241 ataaacagaatgaatttaca 135222
>gb|AC111193.5| Homo sapiens BAC clone RP11-397D21 from 4, complete sequence Length = 73175 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 atgaatttacagatggtgtttcat 50 |||||||||||| ||||||||||| Sbjct: 59646 atgaatttacaggtggtgtttcat 59623
>gb|AC110620.3| Homo sapiens BAC clone RP11-683I7 from 2, complete sequence Length = 142234 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ctgcatctctggagctgtgg 318 |||||||||||||||||||| Sbjct: 34091 ctgcatctctggagctgtgg 34072
>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete sequence Length = 167407 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 caaagcattacacacagtggttca 86 ||||||||||||||| |||||||| Sbjct: 57592 caaagcattacacactgtggttca 57615
>dbj|AB024959.1| Todea barbara chloroplast rbcL gene for large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase, partial cds Length = 1231 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttggattcaaagcattac 73 |||||||||||||||||||| Sbjct: 307 gtttggattcaaagcattac 326
>dbj|AB024958.1| Leptopteris wilksiana chloroplast rbcL gene for large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase, partial cds Length = 1231 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttggattcaaagcattac 73 |||||||||||||||||||| Sbjct: 307 gtttggattcaaagcattac 326
>dbj|AB024957.1| Leptopteris hymenophylloides chloroplast rbcL gene for large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase, partial cds Length = 1231 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttggattcaaagcattac 73 |||||||||||||||||||| Sbjct: 307 gtttggattcaaagcattac 326
>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete sequence Length = 196933 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 acagcagcagcattcagagt 143 |||||||||||||||||||| Sbjct: 63372 acagcagcagcattcagagt 63353
>dbj|AB076260.1| Todea barbara rbcL gene for ribulose 1,5-bisphosphate carboxylase large subunit, partial cds Length = 1227 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtttggattcaaagcattac 73 |||||||||||||||||||| Sbjct: 303 gtttggattcaaagcattac 322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,123,992 Number of Sequences: 3902068 Number of extensions: 4123992 Number of successful extensions: 74555 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74474 Number of HSP's gapped (non-prelim): 81 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)