ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NDST3_MOUSE (Q9EQH7) Bifunctional heparan sulfate N-deacetylase/... 28 4.6

>NDST3_MOUSE (Q9EQH7) Bifunctional heparan sulfate|
           N-deacetylase/N-sulfotransferase 3 (EC 2.8.2.8)
           (Glucosaminyl N-deacetylase/N-sulfotransferase 3)
           (NDST-3) (N-heparan sulfate sulfotransferase 3) (N-HSST
           3) [Includes: Heparan sulfate N-deacetylase 3 (EC
          Length = 873

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 226 HHXICSHASEXSWCRSIITSYCIKHGTICXGINITGHCN 110
           +  I  + +  SW RS++  YCI++G    G + T   N
Sbjct: 133 YENILKYINMDSWNRSLLDKYCIEYGVGIIGFHKTSEKN 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,828,776
Number of Sequences: 219361
Number of extensions: 452326
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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