ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC156020.2| Mus musculus BAC clone RP23-343A9 from chromosome... 42 0.94
2gb|AC005552.3| Homo sapiens chromosome 17, clone RP11-212E8, com... 42 0.94
3gb|AC110605.5| Homo sapiens chromosome 17, clone CTD-2317L23, co... 42 0.94
4gb|AC131979.10| Mus musculus chromosome 16, clone RP24-156L5, co... 42 0.94

>gb|AC156020.2| Mus musculus BAC clone RP23-343A9 from chromosome 16, complete sequence
          Length = 215559

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    gacttgtctgcagcaaccctttcag 79
             |||| ||||||||||||||||||||
Sbjct: 76086 gactggtctgcagcaaccctttcag 76110



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>gb|AC005552.3| Homo sapiens chromosome 17, clone RP11-212E8, complete sequence
          Length = 165837

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     caagtcatgaatagaattcat 42
              |||||||||||||||||||||
Sbjct: 155882 caagtcatgaatagaattcat 155862



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>gb|AC110605.5| Homo sapiens chromosome 17, clone CTD-2317L23, complete sequence
          Length = 60418

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    caagtcatgaatagaattcat 42
             |||||||||||||||||||||
Sbjct: 19038 caagtcatgaatagaattcat 19018



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>gb|AC131979.10| Mus musculus chromosome 16, clone RP24-156L5, complete sequence
          Length = 156267

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    gacttgtctgcagcaaccctttcag 79
             |||| ||||||||||||||||||||
Sbjct: 90785 gactggtctgcagcaaccctttcag 90809


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,372,008
Number of Sequences: 3902068
Number of extensions: 1372008
Number of successful extensions: 18657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18653
Number of HSP's gapped (non-prelim): 4
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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