ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY579884.1| Hordeum vulgare AML6 mRNA, complete cds 204 7e-50
2ref|XM_844312.1| PREDICTED: Canis familiaris similar to Adenylat... 40 2.3
3ref|XM_540108.2| PREDICTED: Canis familiaris similar to Adenylat... 40 2.3
4ref|XM_853481.1| PREDICTED: Canis familiaris similar to Adenylat... 40 2.3
5gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, com... 40 2.3
6gb|AC134329.3| Mus musculus BAC clone RP24-310D17 from 10, compl... 40 2.3
7ref|NM_130779.1| Rattus norvegicus adenylate cyclase 3 (Adcy3), ... 38 9.0
8gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 38 9.0
9ref|NM_138305.2| Mus musculus adenylate cyclase 3 (Adcy3), mRNA 38 9.0
10ref|XM_615710.2| PREDICTED: Bos taurus similar to Adenylate cycl... 38 9.0
11gb|AF287957.6| Homo sapiens chromosome 8 clone CTD-2541M15 map p... 38 9.0
12gb|AC110256.12| Mus musculus chromosome 6, clone RP23-274K3, com... 38 9.0
13gb|AC131764.3| Mus musculus BAC clone RP24-239L16 from chromosom... 38 9.0
14gb|BC057316.1| Mus musculus adenylate cyclase 3, mRNA (cDNA clon... 38 9.0
15emb|AL121749.14|HSBA425A6 Human DNA sequence from clone RP11-425... 38 9.0
16gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, com... 38 9.0
17gb|AF458089.1|AF458089 Mus musculus adenylyl cyclase 3 (Adcy3) m... 38 9.0
18gb|BC057113.1| Mus musculus adenylate cyclase 3, mRNA (cDNA clon... 38 9.0
19dbj|AK122298.1| Mus musculus mRNA for mKIAA0511 protein 38 9.0
20gb|AC132615.5| Mus musculus BAC clone RP23-301J15 from 9, comple... 38 9.0
21gb|M55075.1|RATADCY3 R.norvegicus type III adenylyl cyclase mRNA... 38 9.0
22gb|AC168266.2| Mus musculus BAC clone RP24-245G1 from chromosome... 38 9.0

>gb|AY579884.1| Hordeum vulgare AML6 mRNA, complete cds
          Length = 3269

 Score =  204 bits (103), Expect = 7e-50
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                        
Query: 81   tcacctcctgcgcatttcgcccaccttgcaaccgtccgaactctagagttcgtcggcggg 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3132 tcacctcctgcgcatttcgcccaccttgcaaccgtccgaactctagagttcgtcggcggg 3073

                                                       
Query: 141  gcaaaaacgagggcgcccttgcgcaacttactcacggcgaatc 183
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3072 gcaaaaacgagggcgcccttgcgcaacttactcacggcgaatc 3030



 Score =  111 bits (56), Expect = 7e-22
 Identities = 56/56 (100%)
 Strand = Plus / Minus

                                                                    
Query: 1    gattagcatccaacacccctccaactcaactgtacagctccccatccctcttcttg 56
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3214 gattagcatccaacacccctccaactcaactgtacagctccccatccctcttcttg 3159



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>ref|XM_844312.1| PREDICTED: Canis familiaris similar to Adenylate cyclase type III
            (Adenylate cyclase, olfactive type) (ATP
            pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
            (AC3), transcript variant 3 (LOC482994), mRNA
          Length = 3489

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   tacagctccccatccctcttcttg 56
            ||||||||| ||||||||||||||
Sbjct: 2750 tacagctcctcatccctcttcttg 2727



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>ref|XM_540108.2| PREDICTED: Canis familiaris similar to Adenylate cyclase type III
            (Adenylate cyclase, olfactive type) (ATP
            pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
            (AC3), transcript variant 1 (LOC482994), mRNA
          Length = 3489

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   tacagctccccatccctcttcttg 56
            ||||||||| ||||||||||||||
Sbjct: 2750 tacagctcctcatccctcttcttg 2727



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>ref|XM_853481.1| PREDICTED: Canis familiaris similar to Adenylate cyclase type III
            (Adenylate cyclase, olfactive type) (ATP
            pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
            (AC3), transcript variant 4 (LOC482994), mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   tacagctccccatccctcttcttg 56
            ||||||||| ||||||||||||||
Sbjct: 2417 tacagctcctcatccctcttcttg 2394



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>gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, complete sequence
          Length = 204292

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    gtacagctccccatccctct 51
             ||||||||||||||||||||
Sbjct: 65482 gtacagctccccatccctct 65501



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>gb|AC134329.3| Mus musculus BAC clone RP24-310D17 from 10, complete sequence
          Length = 159173

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    ccaacacccctccaactcaa 29
             ||||||||||||||||||||
Sbjct: 97298 ccaacacccctccaactcaa 97317



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>ref|NM_130779.1| Rattus norvegicus adenylate cyclase 3 (Adcy3), mRNA
          Length = 4533

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 3113 ctgtacagctcctcatctctcttcttg 3087



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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 95     tttcgcccaccttgcaacc 113
              |||||||||||||||||||
Sbjct: 848349 tttcgcccaccttgcaacc 848367



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>ref|NM_138305.2| Mus musculus adenylate cyclase 3 (Adcy3), mRNA
          Length = 3674

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 2895 ctgtacagctcctcatctctcttcttg 2869



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>ref|XM_615710.2| PREDICTED: Bos taurus similar to Adenylate cyclase type III
            (Adenylate cyclase, olfactive type) (ATP
            pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III)
            (AC3) (LOC535603), mRNA
          Length = 3489

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 2750 ctgtacagctcctcatctctcttcttg 2724



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>gb|AF287957.6| Homo sapiens chromosome 8 clone CTD-2541M15 map p23.1, complete
             sequence
          Length = 168136

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    gctccccatccctcttctt 55
             |||||||||||||||||||
Sbjct: 95024 gctccccatccctcttctt 95042



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>gb|AC110256.12| Mus musculus chromosome 6, clone RP23-274K3, complete sequence
          Length = 240425

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     acagctccccatccctctt 52
              |||||||||||||||||||
Sbjct: 145071 acagctccccatccctctt 145053



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>gb|AC131764.3| Mus musculus BAC clone RP24-239L16 from chromosome 6, complete sequence
          Length = 210145

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     acagctccccatccctctt 52
              |||||||||||||||||||
Sbjct: 199341 acagctccccatccctctt 199359



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>gb|BC057316.1| Mus musculus adenylate cyclase 3, mRNA (cDNA clone MGC:66648
            IMAGE:6830961), complete cds
          Length = 5168

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 3135 ctgtacagctcctcatctctcttcttg 3109



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>emb|AL121749.14|HSBA425A6 Human DNA sequence from clone RP11-425A6 on chromosome 10 Contains the
             3' end of the gene for cyclin fold protein 1 (CFP1)
             (CBCP1), the gene for connexin40.1 (CX40.1) (FLJ90023),
             the FZD8 gene for frizzled homolog 8 (Drosophila) and two
             CpG islands, complete sequence
          Length = 166007

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 22    caactcaactgtacagctcccca 44
             ||||||||||| |||||||||||
Sbjct: 90625 caactcaactgcacagctcccca 90603



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>gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, complete sequence
          Length = 168319

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    tacagctccccatccctct 51
             |||||||||||||||||||
Sbjct: 24451 tacagctccccatccctct 24433



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>gb|AF458089.1|AF458089 Mus musculus adenylyl cyclase 3 (Adcy3) mRNA, complete cds
          Length = 3674

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 2895 ctgtacagctcctcatctctcttcttg 2869



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>gb|BC057113.1| Mus musculus adenylate cyclase 3, mRNA (cDNA clone MGC:64706
            IMAGE:6835448), complete cds
          Length = 4674

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 3231 ctgtacagctcctcatctctcttcttg 3205



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>dbj|AK122298.1| Mus musculus mRNA for mKIAA0511 protein
          Length = 4639

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 3214 ctgtacagctcctcatctctcttcttg 3188



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>gb|AC132615.5| Mus musculus BAC clone RP23-301J15 from 9, complete sequence
          Length = 201718

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      agcatccaacacccctcca 23
              |||||||||||||||||||
Sbjct: 116964 agcatccaacacccctcca 116946



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>gb|M55075.1|RATADCY3 R.norvegicus type III adenylyl cyclase mRNA, complete cds
          Length = 4533

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 30   ctgtacagctccccatccctcttcttg 56
            |||||||||||| |||| |||||||||
Sbjct: 3113 ctgtacagctcctcatctctcttcttg 3087



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>gb|AC168266.2| Mus musculus BAC clone RP24-245G1 from chromosome 9, complete sequence
          Length = 188778

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      agcatccaacacccctcca 23
              |||||||||||||||||||
Sbjct: 156014 agcatccaacacccctcca 156032


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 811,726
Number of Sequences: 3902068
Number of extensions: 811726
Number of successful extensions: 48612
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48575
Number of HSP's gapped (non-prelim): 37
length of query: 183
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 161
effective length of database: 17,147,199,772
effective search space: 2760699163292
effective search space used: 2760699163292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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