>emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome 5, BAC clone T6I14 (ESSA project)
          Length = 90472

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Minus

                                              
Query: 58    caagaattgcatggaaaagaaaaaggcaaaaca 90
             ||||||||||||  |||||||||||||||||||
Sbjct: 65074 caagaattgcat--aaaagaaaaaggcaaaaca 65044

>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
          Length = 79259

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Minus

                                              
Query: 58    caagaattgcatggaaaagaaaaaggcaaaaca 90
             ||||||||||||  |||||||||||||||||||
Sbjct: 25816 caagaattgcat--aaaagaaaaaggcaaaaca 25786

>gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromosome 7, complete
              sequence
          Length = 169275

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 67     catggaaaagaaaaaggcaaa 87
              |||||||||||||||||||||
Sbjct: 121709 catggaaaagaaaaaggcaaa 121689

>gb|AC103610.9| Mus musculus chromosome 9, clone RP23-364M24, complete sequence
          Length = 205900

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 70    ggaaaagaaaaaggcaaaacacttg 94
             |||||||||| ||||||||||||||
Sbjct: 24752 ggaaaagaaataggcaaaacacttg 24728

>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two
              novel genes (FLJ36774) and five CpG islands, complete
              sequence
          Length = 158335

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 206    tcttgtccattaattgtcttagcaacttaggca 238
              |||||||||||| ||||| |||||||| |||||
Sbjct: 134482 tcttgtccattagttgtcatagcaactgaggca 134450

>gb|AC073468.9| Homo sapiens BAC clone RP11-405I21 from 7, complete sequence
          Length = 138435

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    catggaaaagaaaaaggcaaa 87
             |||||||||||||||||||||
Sbjct: 64843 catggaaaagaaaaaggcaaa 64823

>gb|AC097674.6| Rattus norvegicus 2 CH230-75D18 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227596

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 454    agtacattgataagccccatg 474
              |||||||||||||||||||||
Sbjct: 207819 agtacattgataagccccatg 207799

>gb|AC104687.3| Homo sapiens BAC clone RP11-123J14 from 4, complete sequence
          Length = 176662

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     ggaaaagaaaaaggcaaaaca 90
              |||||||||||||||||||||
Sbjct: 164954 ggaaaagaaaaaggcaaaaca 164974

>gb|AF265637.1|AF265637 Catalaphyllia jardinei 28S ribosomal RNA gene, partial sequence
          Length = 305

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 226 agcaacttaggcactgcctgtccac 250
           |||||||||||||||||| ||||||
Sbjct: 151 agcaacttaggcactgcccgtccac 127

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     tctcgacataatcgtcaaac 375
               ||||||||||||||||||||
Sbjct: 1523320 tctcgacataatcgtcaaac 1523339

>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    tggaaaagaaaaaggcaaaacact 92
             ||||||||||||||||||| ||||
Sbjct: 58578 tggaaaagaaaaaggcaaatcact 58601

>gb|AC098697.4| Rattus norvegicus strain Brown Norway clone RP31-387A21, complete
             sequence
          Length = 123000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tggaaaagaaaaaggcaaaa 88
             ||||||||||||||||||||
Sbjct: 15629 tggaaaagaaaaaggcaaaa 15648

>emb|AL133333.15| Human DNA sequence from clone RP11-462L8 on chromosome 10 Contains
            the 3' end of a novel gene, a ribosomal protein L7a
            (RPL7A) pseudogene and a CpG island, complete sequence
          Length = 47610

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   ggaaaagaaaaaggcaaaac 89
            ||||||||||||||||||||
Sbjct: 4785 ggaaaagaaaaaggcaaaac 4804

>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
              complete sequence
          Length = 140948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gaaaagaaaaaggcaaaaca 90
              ||||||||||||||||||||
Sbjct: 138873 gaaaagaaaaaggcaaaaca 138892

>emb|AL672026.11| Mouse DNA sequence from clone RP23-403O11 on chromosome X, complete
             sequence
          Length = 200566

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gaaaagaaaaaggcaaaaca 90
             ||||||||||||||||||||
Sbjct: 76983 gaaaagaaaaaggcaaaaca 77002

>gb|AC078871.16| Homo sapiens 12q BAC RP11-919C7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 119238

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   gttgccaagctctcacagcc 446
             ||||||||||||||||||||
Sbjct: 98655 gttgccaagctctcacagcc 98636

>gb|AC102282.20| Mus musculus chromosome 5, clone RP24-319P5, complete sequence
          Length = 175569

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aagaaaaaggcaaaacactt 93
             ||||||||||||||||||||
Sbjct: 36663 aagaaaaaggcaaaacactt 36644

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 71      gaaaagaaaaaggcaaaaca 90
               ||||||||||||||||||||
Sbjct: 1059154 gaaaagaaaaaggcaaaaca 1059173

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 253      tttgcaagaacatcagccaa 272
                ||||||||||||||||||||
Sbjct: 10854148 tttgcaagaacatcagccaa 10854167

>gb|AC011593.8| Homo sapiens BAC clone RP11-437E9 from 2, complete sequence
          Length = 130349

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    ataaaatttaaatgtgctacatca 36
             ||||||||| ||||||||||||||
Sbjct: 56416 ataaaattttaatgtgctacatca 56439

>ref|NM_204147.1| Gallus gallus matrin 3 (MATR3), mRNA
          Length = 3405

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  tgagtagcatcagtcttaga 302
            ||||||||||||||||||||
Sbjct: 2147 tgagtagcatcagtcttaga 2128

>gb|AC079990.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-327J16,
             complete sequence
          Length = 116793

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tggaaaagaaaaaggcaaaa 88
             ||||||||||||||||||||
Sbjct: 52129 tggaaaagaaaaaggcaaaa 52110

>gb|AC068609.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-98L5, complete
             sequence
          Length = 192263

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tggaaaagaaaaaggcaaaa 88
             ||||||||||||||||||||
Sbjct: 58465 tggaaaagaaaaaggcaaaa 58484

>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence
          Length = 140426

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    tggaaaagaaaaaggcaaaacact 92
             ||||||||||||||||||| ||||
Sbjct: 58578 tggaaaagaaaaaggcaaatcact 58601

>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   tttgcaagaacatcagccaa 272
             ||||||||||||||||||||
Sbjct: 77871 tttgcaagaacatcagccaa 77890

>dbj|AK062048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A12, full
           insert sequence
          Length = 1375

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 tttgcaagaacatcagccaa 272
           ||||||||||||||||||||
Sbjct: 700 tttgcaagaacatcagccaa 681

>emb|CT573094.2| CH250-64B17, complete sequence
          Length = 144218

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ctttgcatgagtagcatcag 295
             ||||||||||||||||||||
Sbjct: 29451 ctttgcatgagtagcatcag 29470

>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
            complete sequence
          Length = 167895

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   gaaaagaaaaaggcaaaaca 90
            ||||||||||||||||||||
Sbjct: 1523 gaaaagaaaaaggcaaaaca 1542

>dbj|AB021168.1| Gallus gallus mRNA for nuclear protein matrin 3, complete cds
          Length = 3405

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  tgagtagcatcagtcttaga 302
            ||||||||||||||||||||
Sbjct: 2147 tgagtagcatcagtcttaga 2128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,490,767
Number of Sequences: 3902068
Number of extensions: 5490767
Number of successful extensions: 109926
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 109762
Number of HSP's gapped (non-prelim): 166
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)