ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18)... 51 2e-06
2TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4) 33 0.51
3SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescin... 30 3.3
4ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integ... 30 4.3
5HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7) 30 5.6
6KHSE_YEAST (P17423) Homoserine kinase (EC 2.7.1.39) (HSK) (HK) 29 7.4
7MRGRE_MACFA (Q5U9D7) Mas-related G-protein coupled receptor memb... 29 7.4
8AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-) 29 7.4
9TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1) 29 7.4
10SPEE_ECOLI (P09158) Spermidine synthase (EC 2.5.1.16) (Putrescin... 29 9.6
11SPEE_ECOL6 (P66833) Spermidine synthase (EC 2.5.1.16) (Putrescin... 29 9.6
12SPEE_ECO57 (P66834) Spermidine synthase (EC 2.5.1.16) (Putrescin... 29 9.6
13DAF_CAVPO (Q60401) Complement decay-accelerating factor precurso... 29 9.6
14CCL11_MACMU (Q8MIT7) Eotaxin precursor (Small inducible cytokine... 29 9.6

>MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18) (MADS-box|
           protein 2) (OsMADS2) (MADS-box protein 28) (OsMADS28)
           (FDRMADS7)
          Length = 249

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = -3

Query: 528 QSRGGGDPEPQPSPAQANNSNLPPWMLRT 442
           Q RG G+ E QPSPAQA NS LPPWMLRT
Sbjct: 218 QPRGSGESEAQPSPAQAGNSKLPPWMLRT 246



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>TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4)|
          Length = 254

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 91  GWNTKTVSTCKTIPQIH*SLHTKVQPQDRAHRSAKKKGN*NVETRHCSL*CRKSSRQEDP 270
           GW TK   TC ++P+    +   +  Q     +  K G+   +T  C+   +K + Q D 
Sbjct: 149 GWGTKCFLTCVSLPKTLQEVEVDIVDQKACASNEFKYGSQIQDTMVCAYALKKDACQGDS 208

Query: 271 IHPVAKTHGLIGGYT-GSHCRR 333
             P+   + L+G  + GS C R
Sbjct: 209 GGPLVANNQLVGIVSWGSGCAR 230



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>SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 287

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447
           H  AK   +IGG  G+  R  T H+ + SI       +    GVV  CRQ  P+  A   
Sbjct: 74  HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128

Query: 448 EHPRWQIAV 474
           + PR+Q+ +
Sbjct: 129 DDPRFQLVI 137



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>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7|
           heavy chain; Integrin alpha-7 light chain]
          Length = 1106

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 537 GPYQSRGGGDPEPQPSPAQANN 472
           GPY++ G  D +P+PSP  AN+
Sbjct: 212 GPYEAGGEKDQDPRPSPVPANS 233



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>HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 328

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 119 VKPYRKSIKAYTRKSNHKIVLIDQRKKKG 205
           +KPY+K I+ + RK  H  +LI  +K  G
Sbjct: 8   IKPYKKIIRLHERKKAHHAILIKTQKGMG 36



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>KHSE_YEAST (P17423) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 356

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = +1

Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQPSSVADGAEH 453
           HP   T  ++GG+ GS  R  T        +   +    PSGG   G   P    D   H
Sbjct: 145 HPDNITAAMMGGFCGSFLRDLTPQEVERREIPLAEVLPEPSGGEDTGLVPPLPPTDIGRH 204

Query: 454 PR--WQIAVVCL 483
            +  W  A+ C+
Sbjct: 205 VKYQWNPAIKCI 216



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>MRGRE_MACFA (Q5U9D7) Mas-related G-protein coupled receptor member E|
          Length = 311

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -1

Query: 233 EQCLVSTFQFPFFFADR*ARSCGWTFVCKL*WICGMVLHV-----DTVFVFHPL*KCKRA 69
           EQCL + F  P +++ R  R    T VC L W C ++LH+      T F   P     R 
Sbjct: 119 EQCLAALF--PAWYSCRRPRHLT-TCVCALTWACCLLLHLLLSGACTQFFGEPSRHLCRT 175

Query: 68  LPSLYIVIKRVGHCTSC 18
           L  +  V+  V  CT C
Sbjct: 176 LWLVAAVLLAVLCCTMC 192



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>AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-)|
          Length = 281

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 219 NKTLLPIVQEKLKTGRPHSPCSKDTW 296
           N TLL     KLK G+PH+P SK+T+
Sbjct: 189 NTTLLA----KLKAGKPHTPASKNTY 210



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>TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1)|
          Length = 1360

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 478 KQQQSATVDAPHHRQQMKAGDSLIRLHLKATMAPDTRPLW 359
           KQ++   V   H RQ+ +  +     H K  M+P  +P W
Sbjct: 494 KQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEKPAW 533



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>SPEE_ECOLI (P09158) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 287

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447
           H  AK   +IGG  G+  R  T H+ + SI       +    GVV  CRQ  P+  A   
Sbjct: 74  HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128

Query: 448 EHPRWQIAV 474
           + PR+++ +
Sbjct: 129 DDPRFKLVI 137



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>SPEE_ECOL6 (P66833) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 287

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447
           H  AK   +IGG  G+  R  T H+ + SI       +    GVV  CRQ  P+  A   
Sbjct: 74  HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128

Query: 448 EHPRWQIAV 474
           + PR+++ +
Sbjct: 129 DDPRFKLVI 137



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>SPEE_ECO57 (P66834) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 287

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447
           H  AK   +IGG  G+  R  T H+ + SI       +    GVV  CRQ  P+  A   
Sbjct: 74  HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128

Query: 448 EHPRWQIAV 474
           + PR+++ +
Sbjct: 129 DDPRFKLVI 137



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>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55|
           antigen) [Contains: Complement decay-accelerating
           factor, GPI-anchored isoform]
          Length = 507

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 162 PTTRSC--SSISEKKRELKRGNKTLLPIVQEKLKTGRPHSPCSKDTWSYWWLHR 317
           P TR+   S+ + ++++L  G +T L  V      G P   CS     YWW+HR
Sbjct: 372 PDTRTTIKSTTASEEKDLASGYRTFLYGVG----VGVPVIVCSLGLGVYWWIHR 421



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>CCL11_MACMU (Q8MIT7) Eotaxin precursor (Small inducible cytokine A11) (CCL11)|
          Length = 97

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +2

Query: 59  EKAAPFCIFTTDGIQKPCQRVKPYRKSI------KAYTRKSN-HKIVLIDQRKKKGTETW 217
           +  A  C FT    + P QR++ YR+ I      KA   K+   K +  D +KK     W
Sbjct: 26  DSVATTCCFTLTNKKIPLQRLESYRRIISGKCPQKAVIFKTKLAKDICADPKKK-----W 80

Query: 218 KQDTAPYSAGKAQDRKTP 271
            QD+  Y      DRK+P
Sbjct: 81  VQDSMKY-----LDRKSP 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,401,293
Number of Sequences: 219361
Number of extensions: 1957872
Number of successful extensions: 5925
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5913
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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