Clone Name | rbasd0c07 |
---|---|
Clone Library Name | barley_pub |
>MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18) (MADS-box| protein 2) (OsMADS2) (MADS-box protein 28) (OsMADS28) (FDRMADS7) Length = 249 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/29 (75%), Positives = 23/29 (79%) Frame = -3 Query: 528 QSRGGGDPEPQPSPAQANNSNLPPWMLRT 442 Q RG G+ E QPSPAQA NS LPPWMLRT Sbjct: 218 QPRGSGESEAQPSPAQAGNSKLPPWMLRT 246
>TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4)| Length = 254 Score = 33.1 bits (74), Expect = 0.51 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 91 GWNTKTVSTCKTIPQIH*SLHTKVQPQDRAHRSAKKKGN*NVETRHCSL*CRKSSRQEDP 270 GW TK TC ++P+ + + Q + K G+ +T C+ +K + Q D Sbjct: 149 GWGTKCFLTCVSLPKTLQEVEVDIVDQKACASNEFKYGSQIQDTMVCAYALKKDACQGDS 208 Query: 271 IHPVAKTHGLIGGYT-GSHCRR 333 P+ + L+G + GS C R Sbjct: 209 GGPLVANNQLVGIVSWGSGCAR 230
>SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 287 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +1 Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447 H AK +IGG G+ R T H+ + SI + GVV CRQ P+ A Sbjct: 74 HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128 Query: 448 EHPRWQIAV 474 + PR+Q+ + Sbjct: 129 DDPRFQLVI 137
>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1106 Score = 30.0 bits (66), Expect = 4.3 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 Query: 537 GPYQSRGGGDPEPQPSPAQANN 472 GPY++ G D +P+PSP AN+ Sbjct: 212 GPYEAGGEKDQDPRPSPVPANS 233
>HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7)| Length = 328 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 119 VKPYRKSIKAYTRKSNHKIVLIDQRKKKG 205 +KPY+K I+ + RK H +LI +K G Sbjct: 8 IKPYKKIIRLHERKKAHHAILIKTQKGMG 36
>KHSE_YEAST (P17423) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 356 Score = 29.3 bits (64), Expect = 7.4 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Frame = +1 Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQPSSVADGAEH 453 HP T ++GG+ GS R T + + PSGG G P D H Sbjct: 145 HPDNITAAMMGGFCGSFLRDLTPQEVERREIPLAEVLPEPSGGEDTGLVPPLPPTDIGRH 204 Query: 454 PR--WQIAVVCL 483 + W A+ C+ Sbjct: 205 VKYQWNPAIKCI 216
>MRGRE_MACFA (Q5U9D7) Mas-related G-protein coupled receptor member E| Length = 311 Score = 29.3 bits (64), Expect = 7.4 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = -1 Query: 233 EQCLVSTFQFPFFFADR*ARSCGWTFVCKL*WICGMVLHV-----DTVFVFHPL*KCKRA 69 EQCL + F P +++ R R T VC L W C ++LH+ T F P R Sbjct: 119 EQCLAALF--PAWYSCRRPRHLT-TCVCALTWACCLLLHLLLSGACTQFFGEPSRHLCRT 175 Query: 68 LPSLYIVIKRVGHCTSC 18 L + V+ V CT C Sbjct: 176 LWLVAAVLLAVLCCTMC 192
>AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-)| Length = 281 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +3 Query: 219 NKTLLPIVQEKLKTGRPHSPCSKDTW 296 N TLL KLK G+PH+P SK+T+ Sbjct: 189 NTTLLA----KLKAGKPHTPASKNTY 210
>TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1)| Length = 1360 Score = 29.3 bits (64), Expect = 7.4 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -2 Query: 478 KQQQSATVDAPHHRQQMKAGDSLIRLHLKATMAPDTRPLW 359 KQ++ V H RQ+ + + H K M+P +P W Sbjct: 494 KQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEKPAW 533
>SPEE_ECOLI (P09158) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 287 Score = 28.9 bits (63), Expect = 9.6 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +1 Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447 H AK +IGG G+ R T H+ + SI + GVV CRQ P+ A Sbjct: 74 HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128 Query: 448 EHPRWQIAV 474 + PR+++ + Sbjct: 129 DDPRFKLVI 137
>SPEE_ECOL6 (P66833) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 287 Score = 28.9 bits (63), Expect = 9.6 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +1 Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447 H AK +IGG G+ R T H+ + SI + GVV CRQ P+ A Sbjct: 74 HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128 Query: 448 EHPRWQIAV 474 + PR+++ + Sbjct: 129 DDPRFKLVI 137
>SPEE_ECO57 (P66834) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 287 Score = 28.9 bits (63), Expect = 9.6 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +1 Query: 274 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 447 H AK +IGG G+ R T H+ + SI + GVV CRQ P+ A Sbjct: 74 HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128 Query: 448 EHPRWQIAV 474 + PR+++ + Sbjct: 129 DDPRFKLVI 137
>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55| antigen) [Contains: Complement decay-accelerating factor, GPI-anchored isoform] Length = 507 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +3 Query: 162 PTTRSC--SSISEKKRELKRGNKTLLPIVQEKLKTGRPHSPCSKDTWSYWWLHR 317 P TR+ S+ + ++++L G +T L V G P CS YWW+HR Sbjct: 372 PDTRTTIKSTTASEEKDLASGYRTFLYGVG----VGVPVIVCSLGLGVYWWIHR 421
>CCL11_MACMU (Q8MIT7) Eotaxin precursor (Small inducible cytokine A11) (CCL11)| Length = 97 Score = 28.9 bits (63), Expect = 9.6 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Frame = +2 Query: 59 EKAAPFCIFTTDGIQKPCQRVKPYRKSI------KAYTRKSN-HKIVLIDQRKKKGTETW 217 + A C FT + P QR++ YR+ I KA K+ K + D +KK W Sbjct: 26 DSVATTCCFTLTNKKIPLQRLESYRRIISGKCPQKAVIFKTKLAKDICADPKKK-----W 80 Query: 218 KQDTAPYSAGKAQDRKTP 271 QD+ Y DRK+P Sbjct: 81 VQDSMKY-----LDRKSP 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,401,293 Number of Sequences: 219361 Number of extensions: 1957872 Number of successful extensions: 5925 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5913 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)