ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRIM1_BRARE (Q7T3Q2) Cysteine-rich motor neuron 1 protein precur... 28 8.2
2FA24B_HUMAN (Q8N5W8) Protein FAM24B precursor 28 8.2

>CRIM1_BRARE (Q7T3Q2) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
          Length = 1027

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 45  DIDGCVKINFTYRESIILRLLCCALPCAQQQTQAGHTVRVCSSXRDP 185
           DID C        +++   + C ALPC Q  T  G    +C     P
Sbjct: 826 DIDSCTHCYCLQGQTLCSTVSCPALPCHQPLTVEGSCCPMCPESYAP 872



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>FA24B_HUMAN (Q8N5W8) Protein FAM24B precursor|
          Length = 94

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 92  NTTPALLCSAVCPAADPSRAHCTCLFFXSRPPCFCAWN 205
           N+    + +  CPA      +  C  F S PPC C  N
Sbjct: 54  NSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDIN 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,848,600
Number of Sequences: 219361
Number of extensions: 565620
Number of successful extensions: 1272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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