Clone Name | rbasd0c04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_195850.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050M22.6), mRNA Length = 2619 Score = 159 bits (80), Expect = 1e-35 Identities = 197/236 (83%) Strand = Plus / Minus Query: 312 gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371 |||||||| ||||||||||| | ||| | |||||||| ||||| |||||||||||| | Sbjct: 2480 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 2421 Query: 372 agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431 |||||||| |||| || || |||||||| | ||||| | |||||||||| ||||| Sbjct: 2420 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 2361 Query: 432 tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatccgaaatttgca 491 || |||||||||||||| || |||||||| ||| |||||| |||||||| ||||||||| Sbjct: 2360 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatccaaaatttgca 2301 Query: 492 tcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctccttcctt 547 ||||||||||| ||||| || || ||||||| ||||| |||||| ||||||||||| Sbjct: 2300 tcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctccttcctt 2245
>dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full insert sequence Length = 2868 Score = 159 bits (80), Expect = 1e-35 Identities = 197/236 (83%) Strand = Plus / Minus Query: 312 gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371 |||||||| ||||||||||| | ||| | |||||||| ||||| |||||||||||| | Sbjct: 2466 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 2407 Query: 372 agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431 |||||||| |||| || || |||||||| | ||||| | |||||||||| ||||| Sbjct: 2406 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 2347 Query: 432 tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatccgaaatttgca 491 || |||||||||||||| || |||||||| ||| |||||| |||||||| ||||||||| Sbjct: 2346 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatccaaaatttgca 2287 Query: 492 tcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctccttcctt 547 ||||||||||| ||||| || || ||||||| ||||| |||||| ||||||||||| Sbjct: 2286 tcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctccttcctt 2231 Score = 40.1 bits (20), Expect = 7.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 165 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 2613 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 2554 Query: 225 tgac 228 |||| Sbjct: 2553 tgac 2550
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 89.7 bits (45), Expect = 9e-15 Identities = 138/169 (81%) Strand = Plus / Plus Query: 312 gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371 |||||||| ||||||||||| | ||| | |||||||| ||||| |||||||||||| | Sbjct: 39655 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 39714 Query: 372 agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431 |||||||| |||| || || |||||||| | ||||| | |||||||||| ||||| Sbjct: 39715 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 39774 Query: 432 tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatc 480 || |||||||||||||| || |||||||| ||| |||||| ||||||| Sbjct: 39775 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatc 39823 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 483 aaatttgcatcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctcct 542 |||||||||||||||||||| ||||| || || ||||||| ||||| |||||| |||||| Sbjct: 40222 aaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctcct 40281 Query: 543 tcctt 547 ||||| Sbjct: 40282 tcctt 40286 Score = 40.1 bits (20), Expect = 7.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 165 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 39508 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 39567 Query: 225 tgac 228 |||| Sbjct: 39568 tgac 39571
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 89.7 bits (45), Expect = 9e-15 Identities = 138/169 (81%) Strand = Plus / Plus Query: 312 gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371 |||||||| ||||||||||| | ||| | |||||||| ||||| |||||||||||| | Sbjct: 9406171 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 9406230 Query: 372 agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431 |||||||| |||| || || |||||||| | ||||| | |||||||||| ||||| Sbjct: 9406231 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 9406290 Query: 432 tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatc 480 || |||||||||||||| || |||||||| ||| |||||| ||||||| Sbjct: 9406291 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatc 9406339 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 483 aaatttgcatcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctcct 542 |||||||||||||||||||| ||||| || || ||||||| ||||| |||||| |||||| Sbjct: 9406738 aaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctcct 9406797 Query: 543 tcctt 547 ||||| Sbjct: 9406798 tcctt 9406802 Score = 40.1 bits (20), Expect = 7.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 165 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 9406024 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9406083 Query: 225 tgac 228 |||| Sbjct: 9406084 tgac 9406087
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 89.7 bits (45), Expect = 9e-15 Identities = 138/169 (81%) Strand = Plus / Plus Query: 312 gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371 |||||||| ||||||||||| | ||| | |||||||| ||||| |||||||||||| | Sbjct: 9412210 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 9412269 Query: 372 agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431 |||||||| |||| || || |||||||| | ||||| | |||||||||| ||||| Sbjct: 9412270 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 9412329 Query: 432 tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatc 480 || |||||||||||||| || |||||||| ||| |||||| ||||||| Sbjct: 9412330 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatc 9412378 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 483 aaatttgcatcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctcct 542 |||||||||||||||||||| ||||| || || ||||||| ||||| |||||| |||||| Sbjct: 9412777 aaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctcct 9412836 Query: 543 tcctt 547 ||||| Sbjct: 9412837 tcctt 9412841 Score = 40.1 bits (20), Expect = 7.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 165 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 9412063 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9412122 Query: 225 tgac 228 |||| Sbjct: 9412123 tgac 9412126
>dbj|AK100636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110E05, full insert sequence Length = 2744 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 467 tgcagctgggaatccgaaatttgcatcaatttggaatggtgg 508 |||||||| |||||| |||||||||||||||||||| ||||| Sbjct: 2221 tgcagctgtgaatccaaaatttgcatcaatttggaagggtgg 2180
>dbj|AK066931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091O15, full insert sequence Length = 2984 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 467 tgcagctgggaatccgaaatttgcatcaatttggaatggtgg 508 |||||||| |||||| |||||||||||||||||||| ||||| Sbjct: 2261 tgcagctgtgaatccaaaatttgcatcaatttggaagggtgg 2220
>dbj|AP006430.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT33L13, TM0327, complete sequence Length = 105384 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 327 ccttctttccagcagatgttgaccgtcac 355 ||||||||||||||||||||||| ||||| Sbjct: 12332 ccttctttccagcagatgttgactgtcac 12360
>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200, complete sequence Length = 91393 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 327 ccttctttccagcagatgttgaccgtcac 355 ||||||||||||||||||||||| ||||| Sbjct: 8280 ccttctttccagcagatgttgactgtcac 8252
>ref|NM_195843.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.2), mRNA Length = 639 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Minus Query: 467 tgcagctgggaatccgaaatttgcatcaatttggaatggtgg 508 ||||| || |||||| |||||||||||||| ||||| ||||| Sbjct: 174 tgcagttgtgaatccaaaatttgcatcaatctggaagggtgg 133
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 483 aaatttgcatcaatttggaatggtgg 508 |||||||||||||||||||| ||||| Sbjct: 103516 aaatttgcatcaatttggaagggtgg 103541
>dbj|AK072372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068F06, full insert sequence Length = 2110 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 483 aaatttgcatcaatttggaatggtgg 508 |||||||||||||||||||| ||||| Sbjct: 1815 aaatttgcatcaatttggaagggtgg 1840
>emb|AL445931.29| Human DNA sequence from clone RP11-374P20 on chromosome 9 Contains the 5' end of the VAV2 gene for vav 2 oncogene, a novel gene (FLJ35348), the 3' end of the BRD3 gene for bromodomain containing 3, a novel gene and five CpG islands, complete sequence Length = 175033 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ttgcggggcagagcagggagc 422 ||||||||||||||||||||| Sbjct: 168415 ttgcggggcagagcagggagc 168395
>gb|AC002323.1|AC002323 Genomic sequence from Human 9q34, complete sequence Length = 32259 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 ttgcggggcagagcagggagc 422 ||||||||||||||||||||| Sbjct: 693 ttgcggggcagagcagggagc 713
>gb|AC000391.1|AC000391 Genomic sequence from Human 9q34, complete sequence Length = 26060 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 ttgcggggcagagcagggagc 422 ||||||||||||||||||||| Sbjct: 8632 ttgcggggcagagcagggagc 8652
>gb|AF100675.2| Caenorhabditis elegans cosmid Y55H10A, complete sequence Length = 24427 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 469 cagctgggaatccgaaatttgcat 492 ||||||| |||||||||||||||| Sbjct: 16667 cagctggaaatccgaaatttgcat 16644
>gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, complete cds Length = 2290 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 tcgcaacagattgtgcctttggac 148 |||||||||||| ||||||||||| Sbjct: 233 tcgcaacagattttgcctttggac 256
>gb|AY691178.1| Catla catla growth hormone receptor mRNA, complete cds Length = 2291 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 tcgcaacagattgtgcctttggac 148 |||||||||||| ||||||||||| Sbjct: 236 tcgcaacagattttgcctttggac 259
>ref|XM_601023.2| PREDICTED: Bos taurus similar to aryl hydrocarbon receptor 2 (LOC522736), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 ggggcagagcagggagcagg 425 |||||||||||||||||||| Sbjct: 1870 ggggcagagcagggagcagg 1889
>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the 5' end of the SLIT1 gene for slit homolog 1 (Drosophila), a novel gene and a CpG island, complete sequence Length = 172510 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 gagcagggagcaggtacaga 431 |||||||||||||||||||| Sbjct: 153613 gagcagggagcaggtacaga 153632
>emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chromosome 10 Contains the DUSP13 gene for dual specificity phosphatase 13 (BEDP, TMDP, FLJ32450), the gene for a novel protein (FLJ25082), the 5' end fo the VDAC2 gene for voltage-dependent anion channel 2, a peptidylprolyl isomerase A (cyclophilin A)(PPIA)(CYPA, CYPH) pseudogene, a ribosomal protein S26 (RPS26) pseudogene and two CpG islands, complete sequence Length = 159365 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 tagacctccttccttatcac 552 |||||||||||||||||||| Sbjct: 3091 tagacctccttccttatcac 3072
>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene, the FBP2 gene for Fructose-1,6-bisphosphatase 2, a gene for a putative novel protein and one CpG island, complete sequence Length = 170532 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gtgcctttggactgcagaac 156 |||||||||||||||||||| Sbjct: 26274 gtgcctttggactgcagaac 26255
>gb|AC018511.5| Homo sapiens chromosome 10 clone RP11-77G23, complete sequence Length = 159519 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 tagacctccttccttatcac 552 |||||||||||||||||||| Sbjct: 158604 tagacctccttccttatcac 158585
>gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, complete sequence Length = 164269 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 agaatccagtaaattttgtc 56 |||||||||||||||||||| Sbjct: 152335 agaatccagtaaattttgtc 152316
>gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, complete sequence Length = 177788 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 agaatccagtaaattttgtc 56 |||||||||||||||||||| Sbjct: 17862 agaatccagtaaattttgtc 17843
>ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511 (ENSANGG00000010022), partial mRNA Length = 660 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 acattctcacagtggacagg 186 |||||||||||||||||||| Sbjct: 125 acattctcacagtggacagg 144 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,088,099 Number of Sequences: 3902068 Number of extensions: 4088099 Number of successful extensions: 67806 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67704 Number of HSP's gapped (non-prelim): 102 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)