ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_195850.1| Oryza sativa (japonica cultivar-group) hypothet... 159 1e-35
2dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
3gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 90 9e-15
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 90 9e-15
6dbj|AK100636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
7dbj|AK066931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
8dbj|AP006430.1| Lotus japonicus genomic DNA, chromosome 5, clone... 50 0.008
9dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone... 50 0.008
10ref|NM_195843.1| Oryza sativa (japonica cultivar-group) hypothet... 44 0.49
11gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.49
12dbj|AK072372.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.49
13emb|AL445931.29| Human DNA sequence from clone RP11-374P20 on ch... 42 1.9
14gb|AC002323.1|AC002323 Genomic sequence from Human 9q34, complet... 42 1.9
15gb|AC000391.1|AC000391 Genomic sequence from Human 9q34, complet... 42 1.9
16gb|AF100675.2| Caenorhabditis elegans cosmid Y55H10A, complete s... 40 7.7
17gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, c... 40 7.7
18gb|AY691178.1| Catla catla growth hormone receptor mRNA, complet... 40 7.7
19ref|XM_601023.2| PREDICTED: Bos taurus similar to aryl hydrocarb... 40 7.7
20emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chr... 40 7.7
21emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chr... 40 7.7
22emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on ch... 40 7.7
23gb|AC018511.5| Homo sapiens chromosome 10 clone RP11-77G23, comp... 40 7.7
24gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, comp... 40 7.7
25gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, comp... 40 7.7
26ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511 ... 40 7.7

>ref|NM_195850.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0050M22.6), mRNA
          Length = 2619

 Score =  159 bits (80), Expect = 1e-35
 Identities = 197/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 312  gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371
            |||||||| ||||||||||| | ||| | ||||||||  ||||| |||||||||||| | 
Sbjct: 2480 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 2421

                                                                        
Query: 372  agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431
            |||||||| ||||  || || |||||||| |  ||||| |  |||||||||| |||||  
Sbjct: 2420 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 2361

                                                                        
Query: 432  tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatccgaaatttgca 491
            || |||||||||||||| || ||||||||  ||| |||||| |||||||| |||||||||
Sbjct: 2360 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatccaaaatttgca 2301

                                                                    
Query: 492  tcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctccttcctt 547
            ||||||||||| ||||| || || ||||||| ||||| |||||| |||||||||||
Sbjct: 2300 tcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctccttcctt 2245



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>dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full
            insert sequence
          Length = 2868

 Score =  159 bits (80), Expect = 1e-35
 Identities = 197/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 312  gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371
            |||||||| ||||||||||| | ||| | ||||||||  ||||| |||||||||||| | 
Sbjct: 2466 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 2407

                                                                        
Query: 372  agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431
            |||||||| ||||  || || |||||||| |  ||||| |  |||||||||| |||||  
Sbjct: 2406 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 2347

                                                                        
Query: 432  tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatccgaaatttgca 491
            || |||||||||||||| || ||||||||  ||| |||||| |||||||| |||||||||
Sbjct: 2346 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatccaaaatttgca 2287

                                                                    
Query: 492  tcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctccttcctt 547
            ||||||||||| ||||| || || ||||||| ||||| |||||| |||||||||||
Sbjct: 2286 tcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctccttcctt 2231



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 165  gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224
            ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 2613 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 2554

                
Query: 225  tgac 228
            ||||
Sbjct: 2553 tgac 2550



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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 138/169 (81%)
 Strand = Plus / Plus

                                                                         
Query: 312   gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371
             |||||||| ||||||||||| | ||| | ||||||||  ||||| |||||||||||| | 
Sbjct: 39655 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 39714

                                                                         
Query: 372   agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431
             |||||||| ||||  || || |||||||| |  ||||| |  |||||||||| |||||  
Sbjct: 39715 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 39774

                                                              
Query: 432   tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatc 480
             || |||||||||||||| || ||||||||  ||| |||||| |||||||
Sbjct: 39775 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatc 39823



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 483   aaatttgcatcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctcct 542
             |||||||||||||||||||| ||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 40222 aaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctcct 40281

                  
Query: 543   tcctt 547
             |||||
Sbjct: 40282 tcctt 40286



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 165   gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224
             ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 39508 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 39567

                 
Query: 225   tgac 228
             ||||
Sbjct: 39568 tgac 39571



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 138/169 (81%)
 Strand = Plus / Plus

                                                                           
Query: 312     gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371
               |||||||| ||||||||||| | ||| | ||||||||  ||||| |||||||||||| | 
Sbjct: 9406171 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 9406230

                                                                           
Query: 372     agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431
               |||||||| ||||  || || |||||||| |  ||||| |  |||||||||| |||||  
Sbjct: 9406231 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 9406290

                                                                
Query: 432     tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatc 480
               || |||||||||||||| || ||||||||  ||| |||||| |||||||
Sbjct: 9406291 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatc 9406339



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                           
Query: 483     aaatttgcatcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctcct 542
               |||||||||||||||||||| ||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 9406738 aaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctcct 9406797

                    
Query: 543     tcctt 547
               |||||
Sbjct: 9406798 tcctt 9406802



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 165     gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224
               ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 9406024 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9406083

                   
Query: 225     tgac 228
               ||||
Sbjct: 9406084 tgac 9406087



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 138/169 (81%)
 Strand = Plus / Plus

                                                                           
Query: 312     gcttcatgcaggctaccttctttccagcagatgttgaccgtcaccccgcctcgggccctc 371
               |||||||| ||||||||||| | ||| | ||||||||  ||||| |||||||||||| | 
Sbjct: 9412210 gcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttg 9412269

                                                                           
Query: 372     agacctttgacactgccgtggggccacttgttgcggggcagagcagggagcaggtacaga 431
               |||||||| ||||  || || |||||||| |  ||||| |  |||||||||| |||||  
Sbjct: 9412270 agacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaag 9412329

                                                                
Query: 432     tcactcccggtgctctgcacaagcatttcgcacaatgcagctgggaatc 480
               || |||||||||||||| || ||||||||  ||| |||||| |||||||
Sbjct: 9412330 tcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatc 9412378



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                           
Query: 483     aaatttgcatcaatttggaatggtggatgcgccgtgaacaaattgctgtatagacctcct 542
               |||||||||||||||||||| ||||| || || ||||||| ||||| |||||| ||||||
Sbjct: 9412777 aaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctcct 9412836

                    
Query: 543     tcctt 547
               |||||
Sbjct: 9412837 tcctt 9412841



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 165     gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 224
               ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 9412063 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9412122

                   
Query: 225     tgac 228
               ||||
Sbjct: 9412123 tgac 9412126



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>dbj|AK100636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110E05, full
            insert sequence
          Length = 2744

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 467  tgcagctgggaatccgaaatttgcatcaatttggaatggtgg 508
            |||||||| |||||| |||||||||||||||||||| |||||
Sbjct: 2221 tgcagctgtgaatccaaaatttgcatcaatttggaagggtgg 2180



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>dbj|AK066931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091O15, full
            insert sequence
          Length = 2984

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 467  tgcagctgggaatccgaaatttgcatcaatttggaatggtgg 508
            |||||||| |||||| |||||||||||||||||||| |||||
Sbjct: 2261 tgcagctgtgaatccaaaatttgcatcaatttggaagggtgg 2220



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>dbj|AP006430.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT33L13, TM0327,
             complete sequence
          Length = 105384

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 327   ccttctttccagcagatgttgaccgtcac 355
             ||||||||||||||||||||||| |||||
Sbjct: 12332 ccttctttccagcagatgttgactgtcac 12360



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>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200,
            complete sequence
          Length = 91393

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 327  ccttctttccagcagatgttgaccgtcac 355
            ||||||||||||||||||||||| |||||
Sbjct: 8280 ccttctttccagcagatgttgactgtcac 8252



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>ref|NM_195843.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015I18.2), mRNA
          Length = 639

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 467 tgcagctgggaatccgaaatttgcatcaatttggaatggtgg 508
           ||||| || |||||| |||||||||||||| ||||| |||||
Sbjct: 174 tgcagttgtgaatccaaaatttgcatcaatctggaagggtgg 133



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>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12,
              complete sequence
          Length = 122262

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 483    aaatttgcatcaatttggaatggtgg 508
              |||||||||||||||||||| |||||
Sbjct: 103516 aaatttgcatcaatttggaagggtgg 103541



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>dbj|AK072372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068F06, full
            insert sequence
          Length = 2110

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 483  aaatttgcatcaatttggaatggtgg 508
            |||||||||||||||||||| |||||
Sbjct: 1815 aaatttgcatcaatttggaagggtgg 1840



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>emb|AL445931.29| Human DNA sequence from clone RP11-374P20 on chromosome 9 Contains the 5'
              end of the VAV2 gene for vav 2 oncogene, a novel gene
              (FLJ35348), the 3' end of the BRD3 gene for bromodomain
              containing 3, a novel gene and five CpG islands, complete
              sequence
          Length = 175033

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 402    ttgcggggcagagcagggagc 422
              |||||||||||||||||||||
Sbjct: 168415 ttgcggggcagagcagggagc 168395



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>gb|AC002323.1|AC002323 Genomic sequence from Human 9q34, complete sequence
          Length = 32259

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 402 ttgcggggcagagcagggagc 422
           |||||||||||||||||||||
Sbjct: 693 ttgcggggcagagcagggagc 713



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>gb|AC000391.1|AC000391 Genomic sequence from Human 9q34, complete sequence
          Length = 26060

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 402  ttgcggggcagagcagggagc 422
            |||||||||||||||||||||
Sbjct: 8632 ttgcggggcagagcagggagc 8652



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>gb|AF100675.2| Caenorhabditis elegans cosmid Y55H10A, complete sequence
          Length = 24427

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 469   cagctgggaatccgaaatttgcat 492
             ||||||| ||||||||||||||||
Sbjct: 16667 cagctggaaatccgaaatttgcat 16644



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>gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, complete cds
          Length = 2290

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 125 tcgcaacagattgtgcctttggac 148
           |||||||||||| |||||||||||
Sbjct: 233 tcgcaacagattttgcctttggac 256



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>gb|AY691178.1| Catla catla growth hormone receptor mRNA, complete cds
          Length = 2291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 125 tcgcaacagattgtgcctttggac 148
           |||||||||||| |||||||||||
Sbjct: 236 tcgcaacagattttgcctttggac 259



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>ref|XM_601023.2| PREDICTED: Bos taurus similar to aryl hydrocarbon receptor 2
            (LOC522736), mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 406  ggggcagagcagggagcagg 425
            ||||||||||||||||||||
Sbjct: 1870 ggggcagagcagggagcagg 1889



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>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the 5'
              end of the SLIT1 gene for slit homolog 1 (Drosophila), a
              novel gene and a CpG island, complete sequence
          Length = 172510

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    gagcagggagcaggtacaga 431
              ||||||||||||||||||||
Sbjct: 153613 gagcagggagcaggtacaga 153632



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>emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chromosome 10 Contains
            the DUSP13 gene for dual specificity phosphatase 13
            (BEDP, TMDP, FLJ32450), the gene for a novel protein
            (FLJ25082), the 5' end fo the VDAC2 gene for
            voltage-dependent anion channel 2, a peptidylprolyl
            isomerase A (cyclophilin A)(PPIA)(CYPA, CYPH) pseudogene,
            a ribosomal protein S26 (RPS26) pseudogene and two CpG
            islands, complete sequence
          Length = 159365

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  tagacctccttccttatcac 552
            ||||||||||||||||||||
Sbjct: 3091 tagacctccttccttatcac 3072



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>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the
             FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene,
             the FBP2 gene for Fructose-1,6-bisphosphatase 2, a  gene
             for a putative novel protein and one CpG island, complete
             sequence
          Length = 170532

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   gtgcctttggactgcagaac 156
             ||||||||||||||||||||
Sbjct: 26274 gtgcctttggactgcagaac 26255



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>gb|AC018511.5| Homo sapiens chromosome 10 clone RP11-77G23, complete sequence
          Length = 159519

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 533    tagacctccttccttatcac 552
              ||||||||||||||||||||
Sbjct: 158604 tagacctccttccttatcac 158585



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>gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, complete sequence
          Length = 164269

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     agaatccagtaaattttgtc 56
              ||||||||||||||||||||
Sbjct: 152335 agaatccagtaaattttgtc 152316



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>gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, complete sequence
          Length = 177788

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    agaatccagtaaattttgtc 56
             ||||||||||||||||||||
Sbjct: 17862 agaatccagtaaattttgtc 17843



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>ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511
           (ENSANGG00000010022), partial mRNA
          Length = 660

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 acattctcacagtggacagg 186
           ||||||||||||||||||||
Sbjct: 125 acattctcacagtggacagg 144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,088,099
Number of Sequences: 3902068
Number of extensions: 4088099
Number of successful extensions: 67806
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67704
Number of HSP's gapped (non-prelim): 102
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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