ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 79 5e-16
2YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I 29 6.7
3HOXE_CHICK (Q91975) Homeobox protein CHOX-E (CHOX E) (Fragment) 29 8.7
4TERT_TETTH (O77448) Telomerase reverse transcriptase (EC 2.7.7.4... 29 8.7
5FAT1_SCHPO (O13735) Actin-interacting protein 3 homolog 29 8.7
6CHST1_BRARE (Q6DBY9) Carbohydrate sulfotransferase 1 (EC 2.8.2.2... 29 8.7

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 78.6 bits (192), Expect(2) = 5e-16
 Identities = 41/67 (61%), Positives = 47/67 (70%), Gaps = 4/67 (5%)
 Frame = -2

Query: 476 SPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRQEAELAPRH---NDWIV-DSTFNLRA 309
           SPM+RPKMSEVVRMLEGDGLAERWEEWQK E+ RQ+      H   + WI+ DST  +  
Sbjct: 549 SPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDFNYPTHHPAVSGWIIGDSTSQIEN 608

Query: 308 VELSGPR 288
              SGPR
Sbjct: 609 EYPSGPR 615



 Score = 24.6 bits (52), Expect(2) = 5e-16
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 516 EALIQVALLCTQ 481
           E LIQVALLCTQ
Sbjct: 536 EQLIQVALLCTQ 547



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>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = +3

Query: 162 QICYC*QDSVC--HHVQKRARNSATRGCPEPQETGFVFFIFFLLPRAGQLHRPEV 320
           Q+CYC  D  C    +        T   PE  +   +FF F  L    +   PEV
Sbjct: 755 QVCYCLDDLECIDQSINSLVSKMLTSASPEQVDVNILFFQFGKLIETNKFLHPEV 809



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>HOXE_CHICK (Q91975) Homeobox protein CHOX-E (CHOX E) (Fragment)|
          Length = 157

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 305 ELSGPR*QEKNEENKTRLLRLRTAPRCRISSSLLYMMTD 189
           E + PR +EK+  N  RL   +  PR   S S LY+  D
Sbjct: 107 EQTSPRWKEKSPGNSERLTSTQPPPRANSSQSPLYLYPD 145



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>TERT_TETTH (O77448) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (Telomerase subunit P133)
          Length = 1117

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +1

Query: 85  ISQHNNVQPATRITDARIDRTH------SFPFKFATASRTLSVIMYKRELEILQRG 234
           I Q NN+  A  I + +I++        +FP+ F    R ++  +Y  + +ILQ+G
Sbjct: 663 IQQTNNLNSAMEIEEEKINKKPFKMDNINFPYYFNLKERQIAYSLYDDDDQILQKG 718



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>FAT1_SCHPO (O13735) Actin-interacting protein 3 homolog|
          Length = 1385

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 255 SPEAPDSPSLQNF*LSFVHDDRQSPASSSKFERERMCSIYPGVSNSSR 112
           +P +  SPSL+    SFV  D  S ++S +  +    +++PG ++ +R
Sbjct: 347 TPTSLKSPSLRKSPSSFVQKDVYSRSNSLRISQANRSNVFPGATDVTR 394



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>CHST1_BRARE (Q6DBY9) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan|
           sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST)
           (KS6ST)
          Length = 420

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 156 ERMCSIYPGVS-NSSRRLHIVVLANAK 79
           +RMC  YP  + NSSR+ HI++LA  +
Sbjct: 52  DRMCDEYPYFNYNSSRKTHILILATTR 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,388,327
Number of Sequences: 219361
Number of extensions: 1035722
Number of successful extensions: 3266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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