Clone Name | rbasd0c01 |
---|---|
Clone Library Name | barley_pub |
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 78.6 bits (192), Expect(2) = 5e-16 Identities = 41/67 (61%), Positives = 47/67 (70%), Gaps = 4/67 (5%) Frame = -2 Query: 476 SPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRQEAELAPRH---NDWIV-DSTFNLRA 309 SPM+RPKMSEVVRMLEGDGLAERWEEWQK E+ RQ+ H + WI+ DST + Sbjct: 549 SPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDFNYPTHHPAVSGWIIGDSTSQIEN 608 Query: 308 VELSGPR 288 SGPR Sbjct: 609 EYPSGPR 615 Score = 24.6 bits (52), Expect(2) = 5e-16 Identities = 11/12 (91%), Positives = 11/12 (91%) Frame = -1 Query: 516 EALIQVALLCTQ 481 E LIQVALLCTQ Sbjct: 536 EQLIQVALLCTQ 547
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 29.3 bits (64), Expect = 6.7 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%) Frame = +3 Query: 162 QICYC*QDSVC--HHVQKRARNSATRGCPEPQETGFVFFIFFLLPRAGQLHRPEV 320 Q+CYC D C + T PE + +FF F L + PEV Sbjct: 755 QVCYCLDDLECIDQSINSLVSKMLTSASPEQVDVNILFFQFGKLIETNKFLHPEV 809
>HOXE_CHICK (Q91975) Homeobox protein CHOX-E (CHOX E) (Fragment)| Length = 157 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 305 ELSGPR*QEKNEENKTRLLRLRTAPRCRISSSLLYMMTD 189 E + PR +EK+ N RL + PR S S LY+ D Sbjct: 107 EQTSPRWKEKSPGNSERLTSTQPPPRANSSQSPLYLYPD 145
>TERT_TETTH (O77448) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (Telomerase subunit P133) Length = 1117 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Frame = +1 Query: 85 ISQHNNVQPATRITDARIDRTH------SFPFKFATASRTLSVIMYKRELEILQRG 234 I Q NN+ A I + +I++ +FP+ F R ++ +Y + +ILQ+G Sbjct: 663 IQQTNNLNSAMEIEEEKINKKPFKMDNINFPYYFNLKERQIAYSLYDDDDQILQKG 718
>FAT1_SCHPO (O13735) Actin-interacting protein 3 homolog| Length = 1385 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = -1 Query: 255 SPEAPDSPSLQNF*LSFVHDDRQSPASSSKFERERMCSIYPGVSNSSR 112 +P + SPSL+ SFV D S ++S + + +++PG ++ +R Sbjct: 347 TPTSLKSPSLRKSPSSFVQKDVYSRSNSLRISQANRSNVFPGATDVTR 394
>CHST1_BRARE (Q6DBY9) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan| sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) Length = 420 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -1 Query: 156 ERMCSIYPGVS-NSSRRLHIVVLANAK 79 +RMC YP + NSSR+ HI++LA + Sbjct: 52 DRMCDEYPYFNYNSSRKTHILILATTR 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,388,327 Number of Sequences: 219361 Number of extensions: 1035722 Number of successful extensions: 3266 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3264 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)