ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd0b11 |
|---|---|
| Clone Library Name | barley_pub |
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 97.4 bits (241), Expect = 2e-20 Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 9/101 (8%) Frame = -2 Query: 522 SEFSVAVTIFGCPSLAGTWGERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGSP 343 SEFSVAVTIFG AGTWG+ L VYD NMV QELPGGG L+YQSF AA + + SP Sbjct: 294 SEFSVAVTIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAVATSP 353 Query: 342 RSVLNCYVDGNLQSAS-------KVDAFLCWED--DAAQEK 247 +SV +C+ N++SA K+ LCWE+ DA +EK Sbjct: 354 KSVFHCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEK 394
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 85.1 bits (209), Expect = 1e-16 Identities = 51/101 (50%), Positives = 62/101 (61%), Gaps = 8/101 (7%) Frame = -2 Query: 522 SEFSVAVTIFGCPSLAGTWGERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGED---SS 352 SEFSVAVTIFG AGTW + LN Y NMV QELP GG LIYQSF A ED + Sbjct: 294 SEFSVAVTIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDAT-EDVPVAV 352 Query: 351 GSPRSVLNCYVDGNLQSAS-----KVDAFLCWEDDAAQEKD 244 GSP+SVL+C+ N+ + + K+ L W +DA +E D Sbjct: 353 GSPKSVLHCFEAENMVNPAPVKEGKLGNLLPWGEDALEEND 393
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 80.5 bits (197), Expect = 3e-15 Identities = 50/105 (47%), Positives = 61/105 (58%), Gaps = 6/105 (5%) Frame = -2 Query: 522 SEFSVAVTIFGCPSLAGTWGERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGE--DSSG 349 SEFSVAVTIFG A TWG++L+ YD N+V QELP GG LIYQSF A E S+G Sbjct: 287 SEFSVAVTIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAG 346 Query: 348 SPRSVLNCYVDGN----LQSASKVDAFLCWEDDAAQEKDERRGDG 226 SPRSV +C+ + L K+ L W A+E+ G G Sbjct: 347 SPRSVFHCFENVESGHPLVKEGKLANLLAWR---AEEESLEEGTG 388
>DCAM_CATRO (Q42679) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 357 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Frame = -2 Query: 522 SEFSVAVTI-FGCPSLAGTWGERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGS 346 SEFSVAV C SL L + Y + +EL GGS+IY+ F D+ GS Sbjct: 285 SEFSVAVHCDVTCKSLEQICS--LELKEYSLDEKINEELGLGGSIIYKKFLRI--DACGS 340 Query: 345 PRSVLNCYVDGNLQSASKVDAFLCWEDDAAQEK 247 PRS+L C CW++D ++E+ Sbjct: 341 PRSILKC----------------CWKEDESEEE 357
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 35.4 bits (80), Expect = 0.096 Identities = 27/69 (39%), Positives = 35/69 (50%) Frame = -2 Query: 522 SEFSVAVTIFGCPSLAGTWGERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGSP 343 +EFSVAV + S + G L+V Y Q L GS++YQ F A + GSP Sbjct: 283 TEFSVAVHVDNA-SKSFEQGCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVKASD--CGSP 339 Query: 342 RSVLNCYVD 316 RS L C+ D Sbjct: 340 RSTLKCWKD 348
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 32.3 bits (72), Expect = 0.81 Identities = 26/69 (37%), Positives = 33/69 (47%) Frame = -2 Query: 522 SEFSVAVTIFGCPSLAGTWGERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGSP 343 +EFSVAV + S + G L+V Y Q L GS++YQ F GSP Sbjct: 283 TEFSVAVHVDNA-SKSFEQGCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTSY--CGSP 339 Query: 342 RSVLNCYVD 316 RS L C+ D Sbjct: 340 RSTLKCWKD 348
>CAPZA_ARATH (O82631) F-actin capping protein alpha subunit (CapZ-alpha)| Length = 308 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 444 VYDSTNMVVQELPGG-GSLIYQSFXAAGEDSSGSPRSVLNCYVDGNLQSASKV 289 VY+ T+M+ E+P G G +I S+ E+ PR+ VD Q +KV Sbjct: 61 VYNKTHMICLEMPSGAGDVIVSSYSEINENEYLDPRTAQVAIVDHVKQICTKV 113
>IKKA_MOUSE (Q60680) Inhibitor of nuclear factor kappa-B kinase alpha subunit| (EC 2.7.11.10) (I kappa-B kinase alpha) (IkBKA) (IKK-alpha) (IKK-A) (IkappaB kinase) (I-kappa-B kinase 1) (IKK1) (Conserved helix-loop-helix ubiquitous kinase) (Nuclear factor N Length = 745 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Frame = +1 Query: 259 SIVFPAKESIHLGCTL*IAINVAIQNRSWRPTGVFTGSXEAL------VDERAPARQLLD 420 S + P ES+H ++Q+R R TG+ TGS E L +D R PA Q + Sbjct: 325 SFLLPCDESLH-----------SLQSRIERETGINTGSQELLSETGISLDPRKPASQCVL 373 Query: 421 DHV 429 D V Sbjct: 374 DGV 376
>IKKA_HUMAN (O15111) Inhibitor of nuclear factor kappa-B kinase alpha subunit| (EC 2.7.11.10) (I kappa-B kinase alpha) (IkBKA) (IKK-alpha) (IKK-A) (IkappaB kinase) (I-kappa-B kinase 1) (IKK1) (Conserved helix-loop-helix ubiquitous kinase) (Nuclear factor N Length = 745 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Frame = +1 Query: 259 SIVFPAKESIHLGCTL*IAINVAIQNRSWRPTGVFTGSXEAL------VDERAPARQLLD 420 S + P ES+H ++Q+R R TG+ TGS E L +D R PA Q + Sbjct: 325 SFLLPPDESLH-----------SLQSRIERETGINTGSQELLSETGISLDPRKPASQCVL 373 Query: 421 DHV 429 D V Sbjct: 374 DGV 376
>DCAM_HELAN (O65354) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -2 Query: 456 LNVGVYDSTNMVVQELPG-GGSLIYQSFXAAGEDSSGSPRSVLN 328 +NV Y+ + L G GGS++Y F A G S GSPRS L+ Sbjct: 308 VNVKGYNVEETKFEVLGGEGGSMVYYGF-ARGGSSCGSPRSTLH 350
>OXLA_NEUCR (P23623) L-amino-acid oxidase precursor (EC 1.4.3.2) (LAO)| Length = 696 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -2 Query: 462 ERLNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGSPRSVLNCYVDG 313 E L +Y S + ++PG GS+ Y S+ G D P S+L Y+ G Sbjct: 522 EHLPQPIYGSCS-TTSDIPGIGSICYPSYNINGTD---GPASILASYISG 567
>DCAM_TOBAC (O04009) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 29.3 bits (64), Expect = 6.9 Identities = 20/72 (27%), Positives = 30/72 (41%) Frame = -2 Query: 456 LNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGSPRSVLNCYVDGNLQSASKVDAFL 277 ++V Y +E GGS++YQ F GSP+SVL Sbjct: 308 VDVKGYSLAEWSPEEFGKGGSIVYQKFTRT--PFCGSPKSVLKG---------------- 349 Query: 276 CWEDDAAQEKDE 241 CW++D +E+ E Sbjct: 350 CWKEDEEKEEKE 361
>DCAM_NICSY (O80402) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 29.3 bits (64), Expect = 6.9 Identities = 20/72 (27%), Positives = 30/72 (41%) Frame = -2 Query: 456 LNVGVYDSTNMVVQELPGGGSLIYQSFXAAGEDSSGSPRSVLNCYVDGNLQSASKVDAFL 277 ++V Y +E GGS++YQ F GSP+SVL Sbjct: 308 VDVKGYSLAEWSPEEFGKGGSIVYQKFTRT--PFCGSPKSVLKG---------------- 349 Query: 276 CWEDDAAQEKDE 241 CW++D +E+ E Sbjct: 350 CWKEDEEKEEKE 361
>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 528 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%) Frame = +1 Query: 379 ALVDERAPARQLLDDHVGAIID------PNIQPLAPGPSKAR 486 AL+ + P ++L + G +ID PN+ PL+ GP K R Sbjct: 130 ALIPSKPPKSRVLPPNGGPLIDLLTENLPNLPPLSKGPVKKR 171
>DGKM_CAEEL (Q10024) Putative diacylglycerol kinase K06A1.6 (EC 2.7.1.107)| (Diglyceride kinase) (DGK) (DAG kinase) Length = 937 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 39 IIQVFPYICSHWQKTLTIFPVLVHNKALEQEQEISNKNK 155 I Q+FP + HW+K L PV+ A ++ NK++ Sbjct: 166 IKQMFPEMADHWRKALAKSPVVRRTAADQETSNPVNKHR 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,645,569 Number of Sequences: 219361 Number of extensions: 1384584 Number of successful extensions: 3593 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3588 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
