ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466676.1| Oryza sativa (japonica cultivar-group), mRNA 60 8e-06
2ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group... 60 8e-06
3emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethion... 60 8e-06
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
5dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
6dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
7dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
8dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
9dbj|AK059503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
10gb|BT016401.1| Zea mays clone Contig234 mRNA sequence 46 0.11
11gb|AY103940.1| Zea mays PCO064624 mRNA sequence 46 0.11
12gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence 42 1.8
13gb|AC090022.12| Homo sapiens 12 BAC RP11-154D9 (Roswell Park Can... 42 1.8
14gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold 42 1.8
15gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 1... 42 1.8
16gb|AC156561.3| Mus musculus BAC clone RP24-264F22 from chromosom... 40 7.1
17gb|AC166095.3| Mus musculus BAC clone RP24-494O2 from chromosome... 40 7.1
18gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence 40 7.1
19gb|BT016840.1| Zea mays clone Contig673 mRNA sequence 40 7.1
20gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's ... 40 7.1
21gb|AC131586.10| Mus musculus chromosome 14, clone RP24-226L18, c... 40 7.1
22gb|AY180139.1| Phytomonas sp. Ascl.cu.Vz small subunit ribosomal... 40 7.1
23gb|AF235103.5| Homo sapiens chromosome 8 multiple clones map q24... 40 7.1
24gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome... 40 7.1
25gb|AC124422.5| Mus musculus BAC clone RP24-326L13 from chromosom... 40 7.1
26gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete se... 40 7.1
27gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete seq... 40 7.1
28gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete se... 40 7.1
29gb|AC166080.2| Mus musculus BAC clone RP23-3N5 from chromosome 1... 40 7.1
30emb|AL590722.15| Human DNA sequence from clone RP11-57J6 on chro... 40 7.1
31gb|AC008667.10| Homo sapiens chromosome 5 clone CTB-35F21, compl... 40 7.1
32emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca... 40 7.1
33gb|AC130893.3| Homo sapiens X BAC RP13-926M18 (Roswell Park Canc... 40 7.1
34gb|AC164295.2| Mus musculus BAC clone RP24-252L3 from chromosome... 40 7.1
35gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete seq... 40 7.1
36gb|AC074140.5| Homo sapiens chromosome 19 clone LLNLF-18A12, com... 40 7.1
37dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31... 40 7.1
38dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, U... 40 7.1
39gb|AC154806.2| Mus musculus BAC clone RP23-78F6 from chromosome ... 40 7.1
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
41dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region 40 7.1
42dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
43dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
44gb|AY913760.1| Oryzias javanicus choriogenin L mRNA, complete cds 40 7.1
45gb|AY103590.1| Zea mays PCO098412 mRNA sequence 40 7.1
46gb|AC006312.8|AC006312 Homo sapiens chromosome 9, clone hRPK.40... 40 7.1
47gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome... 40 7.1
48emb|AL928998.9| Mouse DNA sequence from clone RP23-58A8 on chrom... 40 7.1
49gb|AC134253.4| Mus musculus BAC clone RP23-473B17 from 14, compl... 40 7.1
50gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, comple... 40 7.1
51gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, compl... 40 7.1
52gb|AC134455.3| Mus musculus BAC clone RP23-294B15 from 14, compl... 40 7.1
53gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome... 40 7.1
54emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-1... 40 7.1
55gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome... 40 7.1
56gb|AC166344.4| Mus musculus BAC clone RP24-63B17 from chromosome... 40 7.1 
>ref|XM_466676.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1750

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                        
Query: 324  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 1396 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1337

                                                                        
Query: 384  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1336 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1277

                                                                        
Query: 444  ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
            |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 1276 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 1217

                         
Query: 504  cagcaacagagaa 516
            | |||||||||||
Sbjct: 1216 ccgcaacagagaa 1204



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  catcagaagctcctcatcttcttacc 228
            |||||| |||||||||||||||||||
Sbjct: 1508 catcagcagctcctcatcttcttacc 1483
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>ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1476_F05.33 mRNA
          Length = 1982

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                        
Query: 324  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 1628 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1569

                                                                        
Query: 384  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1568 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1509

                                                                        
Query: 444  ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
            |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 1508 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 1449

                         
Query: 504  cagcaacagagaa 516
            | |||||||||||
Sbjct: 1448 ccgcaacagagaa 1436



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  catcagaagctcctcatcttcttacc 228
            |||||| |||||||||||||||||||
Sbjct: 1740 catcagcagctcctcatcttcttacc 1715
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>emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethionine decarboxylase 2 (adometDC2
            gene)
          Length = 1971

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                        
Query: 324  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 1614 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1555

                                                                        
Query: 384  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1554 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1495

                                                                        
Query: 444  ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
            |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 1494 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 1435

                         
Query: 504  cagcaacagagaa 516
            | |||||||||||
Sbjct: 1434 ccgcaacagagaa 1422



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  catcagaagctcctcatcttcttacc 228
            |||||| |||||||||||||||||||
Sbjct: 1726 catcagcagctcctcatcttcttacc 1701
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                            
Query: 324      agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
                |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 24067315 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 24067256

                                                                            
Query: 384      ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
                |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 24067255 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 24067196

                                                                            
Query: 444      ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
                |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 24067195 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 24067136

                             
Query: 504      cagcaacagagaa 516
                | |||||||||||
Sbjct: 24067135 ccgcaacagagaa 24067123



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 203      catcagaagctcctcatcttcttacc 228
                |||||| |||||||||||||||||||
Sbjct: 24067427 catcagcagctcctcatcttcttacc 24067402
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A05
          Length = 174290

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                         
Query: 324   agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
             |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 26056 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 25997

                                                                         
Query: 384   ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
             |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 25996 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 25937

                                                                         
Query: 444   ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
             |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 25936 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 25877

                          
Query: 504   cagcaacagagaa 516
             | |||||||||||
Sbjct: 25876 ccgcaacagagaa 25864



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 203   catcagaagctcctcatcttcttacc 228
             |||||| |||||||||||||||||||
Sbjct: 26168 catcagcagctcctcatcttcttacc 26143
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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1476_F05
          Length = 125426

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                          
Query: 324    agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
              |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 102353 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 102294

                                                                          
Query: 384    ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
              |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 102293 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 102234

                                                                          
Query: 444    ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
              |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 102233 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 102174

                           
Query: 504    cagcaacagagaa 516
              | |||||||||||
Sbjct: 102173 ccgcaacagagaa 102161



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 203    catcagaagctcctcatcttcttacc 228
              |||||| |||||||||||||||||||
Sbjct: 102465 catcagcagctcctcatcttcttacc 102440
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>dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full
            insert sequence
          Length = 1982

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                        
Query: 324  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 1628 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1569

                                                                        
Query: 384  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1568 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1509

                                                                        
Query: 444  ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
            |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 1508 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 1449

                         
Query: 504  cagcaacagagaa 516
            | |||||||||||
Sbjct: 1448 ccgcaacagagaa 1436



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  catcagaagctcctcatcttcttacc 228
            |||||| |||||||||||||||||||
Sbjct: 1740 catcagcagctcctcatcttcttacc 1715
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>dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E08, full
            insert sequence
          Length = 1750

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                        
Query: 324  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 1396 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1337

                                                                        
Query: 384  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1336 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1277

                                                                        
Query: 444  ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
            |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 1276 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 1217

                         
Query: 504  cagcaacagagaa 516
            | |||||||||||
Sbjct: 1216 ccgcaacagagaa 1204



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  catcagaagctcctcatcttcttacc 228
            |||||| |||||||||||||||||||
Sbjct: 1508 catcagcagctcctcatcttcttacc 1483
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>dbj|AK059503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A07, full
           insert sequence
          Length = 1232

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 152/193 (78%)
 Strand = Plus / Minus

                                                                       
Query: 324 agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagngaagctct 383
           |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||| ||||||||
Sbjct: 860 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 801

                                                                       
Query: 384 ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 443
           |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 800 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 741

                                                                       
Query: 444 ccccaacattcagcctctcgccccaggtcccagcaaggctagggcagccgaagatggtca 503
           |||| |||| ||||| || | |||||||||| ||| || |  |||  || |||||||| |
Sbjct: 740 ccccgacatccagccccttggcccaggtccctgcatggttgcggccaccaaagatggtaa 681

                        
Query: 504 cagcaacagagaa 516
           | |||||||||||
Sbjct: 680 ccgcaacagagaa 668



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 203 catcagaagctcctcatcttcttacc 228
           |||||| |||||||||||||||||||
Sbjct: 972 catcagcagctcctcatcttcttacc 947
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>gb|BT016401.1| Zea mays clone Contig234 mRNA sequence
          Length = 1105

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 491 ccgaagatggtcacagcaacagagaattcag 521
           |||||||||||||| ||||||||||| ||||
Sbjct: 504 ccgaagatggtcacggcaacagagaactcag 534
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>gb|AY103940.1| Zea mays PCO064624 mRNA sequence
          Length = 2008

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 491  ccgaagatggtcacagcaacagagaattcag 521
            |||||||||||||| ||||||||||| ||||
Sbjct: 1451 ccgaagatggtcacggcaacagagaactcag 1421
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>gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence
          Length = 114691

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 474   cagcaaggctagggcagccga 494
             |||||||||||||||||||||
Sbjct: 36558 cagcaaggctagggcagccga 36578
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>gb|AC090022.12| Homo sapiens 12 BAC RP11-154D9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    atacaggtatttccatacatc 62
             |||||||||||||||||||||
Sbjct: 50251 atacaggtatttccatacatc 50271
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>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold
          Length = 584809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 474    cagcaaggctagggcagccga 494
              |||||||||||||||||||||
Sbjct: 361117 cagcaaggctagggcagccga 361137
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>gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 12, complete sequence
          Length = 194497

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     atacaggtatttccatacatc 62
              |||||||||||||||||||||
Sbjct: 117485 atacaggtatttccatacatc 117505
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>gb|AC156561.3| Mus musculus BAC clone RP24-264F22 from chromosome 14, complete
             sequence
          Length = 170677

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   aaatctctaataagaacaaa 155
             ||||||||||||||||||||
Sbjct: 86771 aaatctctaataagaacaaa 86790
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>gb|AC166095.3| Mus musculus BAC clone RP24-494O2 from chromosome 14, complete sequence
          Length = 155918

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   aaatctctaataagaacaaa 155
             ||||||||||||||||||||
Sbjct: 24625 aaatctctaataagaacaaa 24606
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>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence
          Length = 2057

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 66/79 (83%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                        
Query: 368  gcagcagngaagctctggtagatgagagagccc-ccgccaggcagctcctggacgaccat 426
            ||||||  |||||||||||| | ||| |||||| || ||||||||||||||  | |||||
Sbjct: 1580 gcagcacagaagctctggtacacgag-gagcccgcctccaggcagctcctgctccaccat 1522

                               
Query: 427  gttggtgctatcatagacc 445
            |||| |||  |||||||||
Sbjct: 1521 gttgttgcagtcatagacc 1503
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>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
          Length = 1866

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 66/79 (83%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                       
Query: 368 gcagcagngaagctctggtagatgagagagccc-ccgccaggcagctcctggacgaccat 426
           ||||||  |||||||||||| | ||| |||||| || ||||||||||||||  | |||||
Sbjct: 498 gcagcacagaagctctggtacacgag-gagcccgcctccaggcagctcctgctccaccat 556

                              
Query: 427 gttggtgctatcatagacc 445
           |||| |||  |||||||||
Sbjct: 557 gttgttgcagtcatagacc 575
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>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 245677

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 213    tcctcatcttcttaccatcccccc 236
              ||||||||||| ||||||||||||
Sbjct: 111780 tcctcatcttcctaccatcccccc 111757
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>gb|AC131586.10| Mus musculus chromosome 14, clone RP24-226L18, complete sequence
          Length = 171023

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    cagaaaacgctcaccatttt 94
             ||||||||||||||||||||
Sbjct: 27771 cagaaaacgctcaccatttt 27752
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>gb|AY180139.1| Phytomonas sp. Ascl.cu.Vz small subunit ribosomal RNA gene, partial
            sequence; internal transcribed spacer 1, 5.8S ribosomal
            RNA gene and internal transcribed spacer 2, complete
            sequence; and large subunit ribosomal RNA gene, partial
            sequence
          Length = 1112

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 227  ccatcccccctcctctcatccttctcct 254
            ||||||||||||||||||  ||||||||
Sbjct: 1041 ccatcccccctcctctcacacttctcct 1068
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>gb|AF235103.5| Homo sapiens chromosome 8 multiple clones map q24.3, complete sequence
          Length = 345524

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   cctctcgccccaggtcccag 476
             ||||||||||||||||||||
Sbjct: 80815 cctctcgccccaggtcccag 80796
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>gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome 9, complete
           sequence
          Length = 145102

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 221 ttcttaccatcccccctcctctca 244
           |||||||| |||||||||||||||
Sbjct: 793 ttcttaccctcccccctcctctca 816
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>gb|AC124422.5| Mus musculus BAC clone RP24-326L13 from chromosome 9, complete sequence
          Length = 174375

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    ttcttaccatcccccctcctctca 244
              |||||||| |||||||||||||||
Sbjct: 145098 ttcttaccctcccccctcctctca 145121
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>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence
          Length = 127018

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gctcctcatcttcttaccat 230
             ||||||||||||||||||||
Sbjct: 39981 gctcctcatcttcttaccat 39962
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>gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete sequence
          Length = 128625

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   gacgaccatgttggtgctat 437
             ||||||||||||||||||||
Sbjct: 33770 gacgaccatgttggtgctat 33789
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>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence
          Length = 125303

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   gctcctcatcttcttaccat 230
             ||||||||||||||||||||
Sbjct: 87037 gctcctcatcttcttaccat 87056
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>gb|AC166080.2| Mus musculus BAC clone RP23-3N5 from chromosome 14, complete sequence
          Length = 198220

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    aaatctctaataagaacaaa 155
              ||||||||||||||||||||
Sbjct: 125622 aaatctctaataagaacaaa 125641
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>emb|AL590722.15| Human DNA sequence from clone RP11-57J6 on chromosome 9 Contains a
            novel gene (FLJ21673), complete sequence
          Length = 12053

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  aaggaaagcatccaccttgg 296
            ||||||||||||||||||||
Sbjct: 4685 aaggaaagcatccaccttgg 4704
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>gb|AC008667.10| Homo sapiens chromosome 5 clone CTB-35F21, complete sequence
          Length = 189049

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 201    gccatcagaagctcctcatcttct 224
              |||||||||||| |||||||||||
Sbjct: 120532 gccatcagaagcccctcatcttct 120509
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>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
          Length = 1873

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 66/79 (83%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                        
Query: 368  gcagcagngaagctctggtagatgagagagccc-ccgccaggcagctcctggacgaccat 426
            ||||||  |||||||||||| | ||| |||||| || ||||||||||||||  | |||||
Sbjct: 1400 gcagcacagaagctctggtacacgag-gagcccgcctccaggcagctcctgctccaccat 1342

                               
Query: 427  gttggtgctatcatagacc 445
            |||| |||  |||||||||
Sbjct: 1341 gttgttgcagtcatagacc 1323
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>gb|AC130893.3| Homo sapiens X BAC RP13-926M18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110999

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   tggtcacagcaacagagaat 517
             ||||||||||||||||||||
Sbjct: 10117 tggtcacagcaacagagaat 10136
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>gb|AC164295.2| Mus musculus BAC clone RP24-252L3 from chromosome 14, complete sequence
          Length = 182008

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   aaatctctaataagaacaaa 155
             ||||||||||||||||||||
Sbjct: 54044 aaatctctaataagaacaaa 54025
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>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence
          Length = 129121

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    gacgaccatgttggtgctat 437
              ||||||||||||||||||||
Sbjct: 111684 gacgaccatgttggtgctat 111703
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>gb|AC074140.5| Homo sapiens chromosome 19 clone LLNLF-18A12, complete sequence
          Length = 37049

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  cctcctctcatccttctcct 254
            ||||||||||||||||||||
Sbjct: 2485 cctcctctcatccttctcct 2504
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>dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31, MOG, TRIM15, KRAB,
             TRIM40 genes, complete cds
          Length = 143480

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   ccctcctctcatccttctcc 253
             ||||||||||||||||||||
Sbjct: 14358 ccctcctctcatccttctcc 14377
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>dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, UBD, OLF42-3, OLF42-2,
              OLF42-1, KRAB genes, complete cds
          Length = 156044

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    ccctcctctcatccttctcc 253
              ||||||||||||||||||||
Sbjct: 108510 ccctcctctcatccttctcc 108529
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>gb|AC154806.2| Mus musculus BAC clone RP23-78F6 from chromosome 14, complete sequence
          Length = 218522

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   aaatctctaataagaacaaa 155
             ||||||||||||||||||||
Sbjct: 45074 aaatctctaataagaacaaa 45093
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     tcccccctcctctcatcctt 249
               ||||||||||||||||||||
Sbjct: 2757511 tcccccctcctctcatcctt 2757492
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>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region
          Length = 425935

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    cagaagctcctcatcttctt 225
              ||||||||||||||||||||
Sbjct: 342145 cagaagctcctcatcttctt 342126
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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1364A02
          Length = 137933

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   tcccccctcctctcatcctt 249
             ||||||||||||||||||||
Sbjct: 61072 tcccccctcctctcatcctt 61053
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>dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1048_C10
          Length = 99194

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   tcccccctcctctcatcctt 249
             ||||||||||||||||||||
Sbjct: 64522 tcccccctcctctcatcctt 64503
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>gb|AY913760.1| Oryzias javanicus choriogenin L mRNA, complete cds
          Length = 1502

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 agcaggaacaggaaatctct 143
           ||||||||||||||||||||
Sbjct: 278 agcaggaacaggaaatctct 259
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>gb|AY103590.1| Zea mays PCO098412 mRNA sequence
          Length = 2400

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 66/79 (83%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                        
Query: 368  gcagcagngaagctctggtagatgagagagccc-ccgccaggcagctcctggacgaccat 426
            ||||||  |||||||||||| | ||| |||||| || ||||||||||||||  | |||||
Sbjct: 1649 gcagcacagaagctctggtacacgag-gagcccgcctccaggcagctcctgctccaccat 1591

                               
Query: 427  gttggtgctatcatagacc 445
            |||| |||  |||||||||
Sbjct: 1590 gttgttgcagtcatagacc 1572
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>gb|AC006312.8|AC006312 Homo sapiens chromosome 9, clone  hRPK.401_G_18, complete sequence
          Length = 207656

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    aaggaaagcatccaccttgg 296
              ||||||||||||||||||||
Sbjct: 149428 aaggaaagcatccaccttgg 149409
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>gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome 16, complete sequence
          Length = 208504

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    tggtcacagcaacagagaat 517
              ||||||||||||||||||||
Sbjct: 200214 tggtcacagcaacagagaat 200233
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>emb|AL928998.9| Mouse DNA sequence from clone RP23-58A8 on chromosome 2, complete
             sequence
          Length = 115361

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 229   atcccccctcctctcatccttctc 252
             ||||||||||||||| ||||||||
Sbjct: 29360 atcccccctcctctcctccttctc 29383
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>gb|AC134253.4| Mus musculus BAC clone RP23-473B17 from 14, complete sequence
          Length = 200426

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    aaatctctaataagaacaaa 155
              ||||||||||||||||||||
Sbjct: 180809 aaatctctaataagaacaaa 180828
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>gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, complete sequence
          Length = 146370

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   tggtcacagcaacagagaat 517
             ||||||||||||||||||||
Sbjct: 59748 tggtcacagcaacagagaat 59729
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>gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, complete sequence
          Length = 197168

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    aaatctctaataagaacaaa 155
              ||||||||||||||||||||
Sbjct: 153300 aaatctctaataagaacaaa 153319
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>gb|AC134455.3| Mus musculus BAC clone RP23-294B15 from 14, complete sequence
          Length = 186427

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    aaatctctaataagaacaaa 155
              ||||||||||||||||||||
Sbjct: 166934 aaatctctaataagaacaaa 166953
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>gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome 14, complete
          sequence
          Length = 245591

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 75 cagaaaacgctcaccatttt 94
          ||||||||||||||||||||
Sbjct: 34 cagaaaacgctcaccatttt 53
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>emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-159D23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 147454

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    caggtatttccatacatctg 64
             ||||||||||||||||||||
Sbjct: 37238 caggtatttccatacatctg 37257
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>gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome 14, complete sequence
          Length = 233946

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaatctctaataagaacaaa 155
              ||||||||||||||||||||
Sbjct: 116499 aaatctctaataagaacaaa 116480
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>gb|AC166344.4| Mus musculus BAC clone RP24-63B17 from chromosome 14, complete
            sequence
          Length = 224882

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  aaatctctaataagaacaaa 155
            ||||||||||||||||||||
Sbjct: 2309 aaatctctaataagaacaaa 2328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,164,667
Number of Sequences: 3902068
Number of extensions: 4164667
Number of successful extensions: 84106
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 83916
Number of HSP's gapped (non-prelim): 169
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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