Clone Name | rbasd0b10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472198.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 375 bits (189), Expect = e-100 Identities = 312/353 (88%) Strand = Plus / Minus Query: 190 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 249 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||| Sbjct: 1037 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 978 Query: 250 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 309 |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 977 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 918 Query: 310 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 369 |||| ||||||||| || || |||||||| |||||||||||||| |||||||| |||||| Sbjct: 917 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 858 Query: 370 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 429 || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 857 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 798 Query: 430 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 489 || ||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 797 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 738 Query: 490 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaa 542 ||||| ||||||| |||||| | |||||||||||| || || ||||| ||||| Sbjct: 737 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaa 685
>dbj|AK103713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137H02, full insert sequence Length = 1289 Score = 375 bits (189), Expect = e-100 Identities = 312/353 (88%) Strand = Plus / Minus Query: 190 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 249 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||| Sbjct: 1121 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 1062 Query: 250 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 309 |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 1061 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 1002 Query: 310 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 369 |||| ||||||||| || || |||||||| |||||||||||||| |||||||| |||||| Sbjct: 1001 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 942 Query: 370 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 429 || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 941 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 882 Query: 430 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 489 || ||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 881 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 822 Query: 490 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaa 542 ||||| ||||||| |||||| | |||||||||||| || || ||||| ||||| Sbjct: 821 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaa 769
>dbj|AK061349.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F07, full insert sequence Length = 1158 Score = 375 bits (189), Expect = e-100 Identities = 312/353 (88%) Strand = Plus / Minus Query: 190 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 249 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||| Sbjct: 988 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 929 Query: 250 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 309 |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 928 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 869 Query: 310 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 369 |||| ||||||||| || || |||||||| |||||||||||||| |||||||| |||||| Sbjct: 868 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 809 Query: 370 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 429 || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 808 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 749 Query: 430 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 489 || ||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 748 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 689 Query: 490 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaa 542 ||||| ||||||| |||||| | |||||||||||| || || ||||| ||||| Sbjct: 688 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaa 636
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Plus Query: 240 cccattgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcg 299 |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct: 18412019 cccattaatatggttgcagtaactggagatctgattggttacaagataaccctccaaacg 18412078 Query: 300 ggatggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctc 359 || |||||||||| ||||||||| || || |||||||| |||||||||||||| ||||| Sbjct: 18412079 tgacggctcaggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctc 18412138 Query: 360 ctcgccagcagcctttctcgacatgttctcttgcct 395 ||| |||||||| ||||| | ||| ||||||||||| Sbjct: 18412139 ctctccagcagcttttcttgccatattctcttgcct 18412174 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 462 cttgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttc 521 |||||| ||||||||||||||| |||||||||| ||||||| |||||| | ||||||||| Sbjct: 18412499 cttgttctgctctgatgaaagatcatccatgcagccaatcagaaattccaagttcctttc 18412558 Query: 522 cataaagggtgcagtcgacaa 542 ||| || || ||||| ||||| Sbjct: 18412559 catgaatggagcagttgacaa 18412579 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 393 ccttctcttttgaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagta 452 |||||||||||| ||||||||||| ||||||||||| || ||| | ||||||||||| Sbjct: 18412339 ccttctcttttggagccatgcctgctgctgtgactgctgtcttgagacattgcgatagta 18412398 Query: 453 atattggaact 463 ||||||||||| Sbjct: 18412399 atattggaact 18412409 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 190 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccc 241 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 18411595 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccc 18411646
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 174 bits (88), Expect = 2e-40 Identities = 139/156 (89%) Strand = Plus / Plus Query: 240 cccattgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcg 299 |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct: 113942 cccattaatatggttgcagtaactggagatctgattggttacaagataaccctccaaacg 114001 Query: 300 ggatggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctc 359 || |||||||||| ||||||||| || || |||||||| |||||||||||||| ||||| Sbjct: 114002 tgacggctcaggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctc 114061 Query: 360 ctcgccagcagcctttctcgacatgttctcttgcct 395 ||| |||||||| ||||| | ||| ||||||||||| Sbjct: 114062 ctctccagcagcttttcttgccatattctcttgcct 114097 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 462 cttgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttc 521 |||||| ||||||||||||||| |||||||||| ||||||| |||||| | ||||||||| Sbjct: 114422 cttgttctgctctgatgaaagatcatccatgcagccaatcagaaattccaagttcctttc 114481 Query: 522 cataaagggtgcagtcgacaa 542 ||| || || ||||| ||||| Sbjct: 114482 catgaatggagcagttgacaa 114502 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 393 ccttctcttttgaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagta 452 |||||||||||| ||||||||||| ||||||||||| || ||| | ||||||||||| Sbjct: 114262 ccttctcttttggagccatgcctgctgctgtgactgctgtcttgagacattgcgatagta 114321 Query: 453 atattggaact 463 ||||||||||| Sbjct: 114322 atattggaact 114332 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 190 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccc 241 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 113518 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccc 113569
>gb|AY109988.1| Zea mays CL3444_1 mRNA sequence Length = 1334 Score = 170 bits (86), Expect = 3e-39 Identities = 161/186 (86%) Strand = Plus / Plus Query: 183 ctaatcttcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaacccc 242 |||||| || ||||| |||||||||| ||||||||||| |||| |||| ||||||||||| Sbjct: 209 ctaatcctcatgcaaggccttcatcaggtatagcctgtcgaaattctgaccagcaacccc 268 Query: 243 attgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcggga 302 |||||||||||||||||||| |||||||||| ||||| ||||| |||||||| || || Sbjct: 269 gttgatatggttgcagtaactgcagatctgattagttactagatagccctccaatcgtga 328 Query: 303 tggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctc 362 |||||||||| ||||| || ||||| |||||||||||||||||||| | |||||||| Sbjct: 329 gggctcaggaataggcttaaatataggattggatggatcttcttctggtagtggctcctc 388 Query: 363 gccagc 368 ||||| Sbjct: 389 accagc 394 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 404 gaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagtaatattggaact 463 ||||||||||||| |||||||||||||| ||| || ||||| | ||||||||||||| Sbjct: 430 gaagccatgcctgctgctgtgactgttgtcttgagagattgcggttataatattggaact 489 Query: 464 tgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttcca 523 |||| ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| Sbjct: 490 tgttctgctctgatgaaagatcatccatgcacccaatcagaaattccaagttcctttcca 549 Query: 524 taaa 527 |||| Sbjct: 550 taaa 553
>dbj|AP006685.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45M12, TM0378b, complete sequence Length = 86433 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 291 ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 350 |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || || Sbjct: 76290 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 76349 Query: 351 caacggctcctcgccagcagc 371 ||| |||||||| |||||||| Sbjct: 76350 caaaggctcctccccagcagc 76370
>dbj|AP004526.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05E07, TM0055, complete sequence Length = 94516 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 291 ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 350 |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || || Sbjct: 50885 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 50944 Query: 351 caacggctcctcgccagcagc 371 ||| |||||||| |||||||| Sbjct: 50945 caaaggctcctccccagcagc 50965
>dbj|AP004471.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT15H09, TM0005, complete sequence Length = 97710 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 291 ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 350 |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || || Sbjct: 80049 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 80108 Query: 351 caacggctcctcgccagcagc 371 ||| |||||||| |||||||| Sbjct: 80109 caaaggctcctccccagcagc 80129
>ref|NM_213167.1| Danio rerio zgc:85787 (zgc:85787), mRNA Length = 3524 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 cattgatatggttgcagtaactc 264 ||||||||||||||||||||||| Sbjct: 999 cattgatatggttgcagtaactc 977
>gb|BC068386.1| Danio rerio zgc:85787, mRNA (cDNA clone MGC:85787 IMAGE:6961124), complete cds Length = 3524 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 cattgatatggttgcagtaactc 264 ||||||||||||||||||||||| Sbjct: 999 cattgatatggttgcagtaactc 977
>gb|AC005191.1|AC005191 Homo sapiens PAC clone RP1-269O5 from Xq23, complete sequence Length = 185893 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 68 tatctcattttggcaaaacaaaa 90 ||||||||||||||||||||||| Sbjct: 25044 tatctcattttggcaaaacaaaa 25022
>gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, complete sequence Length = 187701 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 386 tctcttgccttctcttttgaagccatgcctgttg 419 |||||||| |||||||||||||||| ||||||| Sbjct: 138178 tctcttgcattctcttttgaagccagtcctgttg 138211
>gb|AC127682.4| Mus musculus BAC clone RP24-170O17 from 8, complete sequence Length = 144298 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Minus Query: 386 tctcttgccttctcttttgaagccatgcctgttg 419 |||||||| |||||||||||||||| ||||||| Sbjct: 15319 tctcttgcattctcttttgaagccagtcctgttg 15286
>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence Length = 208855 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 386 tctcttgccttctcttttgaagccatgcctgttg 419 |||||||| |||||||||||||||| ||||||| Sbjct: 78051 tctcttgcattctcttttgaagccagtcctgttg 78084
>gb|AY704216.1| Mus musculus reelin (Reln) mRNA, partial cds Length = 2241 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 ttgcagtaactcgagatctga 273 ||||||||||||||||||||| Sbjct: 1271 ttgcagtaactcgagatctga 1291
>ref|XM_359934.1| Magnaporthe grisea 70-15 hypothetical protein (MG04843.4) partial mRNA Length = 2178 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 ttctggcaacggctcctcgcc 365 ||||||||||||||||||||| Sbjct: 285 ttctggcaacggctcctcgcc 265
>ref|NM_011261.1| Mus musculus reelin (Reln), mRNA Length = 11673 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 ttgcagtaactcgagatctga 273 ||||||||||||||||||||| Sbjct: 4145 ttgcagtaactcgagatctga 4165
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence Length = 275646 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ttgcagtaactcgagatctga 273 ||||||||||||||||||||| Sbjct: 211802 ttgcagtaactcgagatctga 211782
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence Length = 257203 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ttgcagtaactcgagatctga 273 ||||||||||||||||||||| Sbjct: 53383 ttgcagtaactcgagatctga 53363
>gb|AC006629.1| Caenorhabditis elegans cosmid F12E12, complete sequence Length = 27659 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aatattggaacttgttttgct 472 ||||||||||||||||||||| Sbjct: 24205 aatattggaacttgttttgct 24225
>gb|U24703.1|MMU24703 Mus musculus reelin mRNA, complete cds Length = 11673 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 ttgcagtaactcgagatctga 273 ||||||||||||||||||||| Sbjct: 4145 ttgcagtaactcgagatctga 4165
>ref|XM_477946.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1421 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 802 tctcttgccttctcttttgcagcc 779
>ref|XM_506311.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0027N13.110 mRNA Length = 2157 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 798 tctcttgccttctcttttgcagcc 775
>gb|AC121795.3| Mus musculus BAC clone RP23-421P13 from chromosome 17, complete sequence Length = 204354 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 cctttctcgacatgttctcttgcc 394 |||||||| ||||||||||||||| Sbjct: 78184 cctttctccacatgttctcttgcc 78207
>gb|AC121950.2| Mus musculus BAC clone RP24-216M19 from 6, complete sequence Length = 170988 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 acacaacctcaaaacaaatg 44 |||||||||||||||||||| Sbjct: 163637 acacaacctcaaaacaaatg 163618
>emb|Z99758.8|HS800F24 Human DNA sequence from clone RP4-800F24 on chromosome 1q24 Contains part of the NME7 gene for protein expressed in non-metastatic cells 7 (nucleoside-diphosphate kinase) and a novel gene, complete sequence Length = 140788 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggttgcagtaactcgagatc 270 |||||||||||||||||||| Sbjct: 95013 ggttgcagtaactcgagatc 95032
>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel gene, the 5' end of the CAMTA1 gene for calmodulin binding transcription activator 1, a ribosomal protein L37 (RPL37) pseudogene and a CpG island, complete sequence Length = 204394 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tcctcgccagcagcctttct 377 |||||||||||||||||||| Sbjct: 172953 tcctcgccagcagcctttct 172934
>emb|BX037236.1|CNS090W8 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA9CE02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1008 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 724 atagggttggatagatcttcttct 747
>emb|BX037235.1|CNS090W7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA9CE02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1044 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 481 atagggttggatagatcttcttct 458
>emb|BX029240.1|CNS08UQ4 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA43CH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 964 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 723 atagggttggatagatcttcttct 746
>emb|BX029239.1|CNS08UQ3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA43CH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 958 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 481 atagggttggatagatcttcttct 458
>emb|BX024216.1|CNS08QUK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA36DG06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 288 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 246 atagggttggatagatcttcttct 223
>gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence Length = 202402 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 aactcgagatctgattggtt 279 |||||||||||||||||||| Sbjct: 2143 aactcgagatctgattggtt 2162
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 catgttctcttgccttctct 400 |||||||||||||||||||| Sbjct: 40046 catgttctcttgccttctct 40065
>gb|AC019026.12| Mus musculus chromosome 6 clone RP23-188E5 strain C57BL6/J, complete sequence Length = 157996 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 acacaacctcaaaacaaatg 44 |||||||||||||||||||| Sbjct: 87423 acacaacctcaaaacaaatg 87404
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aaaataggcaatgagcatgc 106 |||||||||||||||||||| Sbjct: 46470 aaaataggcaatgagcatgc 46489
>gb|AC159254.2| Mus musculus BAC clone RP24-112C23 from chromosome 12, complete sequence Length = 163438 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttgaagccatgcctgttgct 421 |||||||||||||||||||| Sbjct: 21512 ttgaagccatgcctgttgct 21531
>ref|NM_058991.1| Caenorhabditis elegans D1007.13 (D1007.13) mRNA, complete cds Length = 801 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gcaaaacaaaataggcaatgagca 103 |||||||||||| ||||||||||| Sbjct: 131 gcaaaacaaaattggcaatgagca 108
>dbj|AK082689.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230087D09 product:reelin, full insert sequence Length = 2555 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgcagtaactcgagatctga 273 |||||||||||||||||||| Sbjct: 677 tgcagtaactcgagatctga 696
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aaaataggcaatgagcatgc 106 |||||||||||||||||||| Sbjct: 13354093 aaaataggcaatgagcatgc 13354112
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 15816846 tctcttgccttctcttttgcagcc 15816869
>gb|AC010200.8| Homo sapiens 12 BAC RP11-575G13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158149 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggttgcagtaactcgagatc 270 |||||||||||||||||||| Sbjct: 121941 ggttgcagtaactcgagatc 121960
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 56360 tctcttgccttctcttttgcagcc 56383
>emb|AL928570.14| Mouse DNA sequence from clone RP23-183A10 on chromosome X, complete sequence Length = 91550 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tcattttggcaaaacaaaat 91 |||||||||||||||||||| Sbjct: 41154 tcattttggcaaaacaaaat 41173
>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete sequence Length = 189900 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cagtgttaagttaaaatctc 161 |||||||||||||||||||| Sbjct: 122519 cagtgttaagttaaaatctc 122538
>gb|AC157091.6| Mus musculus 6 BAC RP24-359O2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 206538 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 acacaacctcaaaacaaatg 44 |||||||||||||||||||| Sbjct: 95627 acacaacctcaaaacaaatg 95608
>ref|XM_311452.2| Anopheles gambiae str. PEST ENSANGP00000018551 (ENSANGG00000016062), partial mRNA Length = 1479 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 103 atagggttggatagatcttcttct 80
>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence Length = 107815 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 catgttctcttgccttctct 400 |||||||||||||||||||| Sbjct: 103145 catgttctcttgccttctct 103126
>ref|XM_307095.2| Anopheles gambiae str. PEST ENSANGP00000012074 (ENSANGG00000009585), partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 atagggttggatggatcttcttct 348 |||||||||||| ||||||||||| Sbjct: 37 atagggttggatagatcttcttct 14
>dbj|AK101282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033D05, full insert sequence Length = 1419 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 800 tctcttgccttctcttttgcagcc 777
>dbj|AK063477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B04, full insert sequence Length = 2160 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 798 tctcttgccttctcttttgcagcc 775
>dbj|AK059613.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F11, full insert sequence Length = 762 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 tctcttgccttctcttttgaagcc 409 ||||||||||||||||||| |||| Sbjct: 119 tctcttgccttctcttttgcagcc 96
>emb|CT571252.9| Mouse DNA sequence from clone RP24-91J7 on chromosome 12, complete sequence Length = 189925 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttgaagccatgcctgttgct 421 |||||||||||||||||||| Sbjct: 67359 ttgaagccatgcctgttgct 67378
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tcattttggcaaaacaaaat 91 |||||||||||||||||||| Sbjct: 1987702 tcattttggcaaaacaaaat 1987683
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aaaataggcaatgagcatgc 106 |||||||||||||||||||| Sbjct: 13361433 aaaataggcaatgagcatgc 13361452
>emb|AL845355.11| Mouse DNA sequence from clone RP23-330F15 on chromosome 2, complete sequence Length = 97155 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 aactcgagatctgattggtt 279 |||||||||||||||||||| Sbjct: 78132 aactcgagatctgattggtt 78113
>dbj|AB209049.1| Homo sapiens mRNA for nucleoside-diphosphate kinase 7 isoform a variant protein Length = 4897 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ggttgcagtaactcgagatc 270 |||||||||||||||||||| Sbjct: 1230 ggttgcagtaactcgagatc 1211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,030,993 Number of Sequences: 3902068 Number of extensions: 5030993 Number of successful extensions: 88474 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88259 Number of HSP's gapped (non-prelim): 209 length of query: 542 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 519 effective length of database: 17,143,297,704 effective search space: 8897371508376 effective search space used: 8897371508376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)