ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472198.1| Oryza sativa (japonica cultivar-group), predic... 375 e-100
2dbj|AK103713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
3dbj|AK061349.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 174 2e-40
6gb|AY109988.1| Zea mays CL3444_1 mRNA sequence 170 3e-39
7dbj|AP006685.1| Lotus japonicus genomic DNA, chromosome 1, clone... 66 1e-07
8dbj|AP004526.1| Lotus japonicus genomic DNA, chromosome 6, clone... 66 1e-07
9dbj|AP004471.1| Lotus japonicus genomic DNA, chromosome 3, clone... 66 1e-07
10ref|NM_213167.1| Danio rerio zgc:85787 (zgc:85787), mRNA 46 0.12
11gb|BC068386.1| Danio rerio zgc:85787, mRNA (cDNA clone MGC:85787... 46 0.12
12gb|AC005191.1|AC005191 Homo sapiens PAC clone RP1-269O5 from Xq2... 46 0.12
13gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, com... 44 0.47
14gb|AC127682.4| Mus musculus BAC clone RP24-170O17 from 8, comple... 44 0.47
15gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome... 44 0.47
16gb|AY704216.1| Mus musculus reelin (Reln) mRNA, partial cds 42 1.9
17ref|XM_359934.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.9
18ref|NM_011261.1| Mus musculus reelin (Reln), mRNA 42 1.9
19gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.9
20gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.9
21gb|AC006629.1| Caenorhabditis elegans cosmid F12E12, complete se... 42 1.9
22gb|U24703.1|MMU24703 Mus musculus reelin mRNA, complete cds 42 1.9
23ref|XM_477946.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
24ref|XM_506311.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.3
25gb|AC121795.3| Mus musculus BAC clone RP23-421P13 from chromosom... 40 7.3
26gb|AC121950.2| Mus musculus BAC clone RP24-216M19 from 6, comple... 40 7.3
27emb|Z99758.8|HS800F24 Human DNA sequence from clone RP4-800F24 o... 40 7.3
28emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chr... 40 7.3
29emb|BX037236.1|CNS090W8 Single read from an extremity of a full-... 40 7.3
30emb|BX037235.1|CNS090W7 Single read from an extremity of a full-... 40 7.3
31emb|BX029240.1|CNS08UQ4 Single read from an extremity of a full-... 40 7.3
32emb|BX029239.1|CNS08UQ3 Single read from an extremity of a full-... 40 7.3
33emb|BX024216.1|CNS08QUK Single read from an extremity of a full-... 40 7.3
34gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence 40 7.3
35gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 40 7.3
36gb|AC019026.12| Mus musculus chromosome 6 clone RP23-188E5 strai... 40 7.3
37gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nippo... 40 7.3
38gb|AC159254.2| Mus musculus BAC clone RP24-112C23 from chromosom... 40 7.3
39ref|NM_058991.1| Caenorhabditis elegans D1007.13 (D1007.13) mRNA... 40 7.3
40dbj|AK082689.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 7.3
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
43gb|AC010200.8| Homo sapiens 12 BAC RP11-575G13 (Roswell Park Can... 40 7.3
44dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45emb|AL928570.14| Mouse DNA sequence from clone RP23-183A10 on ch... 40 7.3
46emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chr... 40 7.3
47gb|AC157091.6| Mus musculus 6 BAC RP24-359O2 (Roswell Park Cance... 40 7.3
48ref|XM_311452.2| Anopheles gambiae str. PEST ENSANGP00000018551 ... 40 7.3
49gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence 40 7.3
50ref|XM_307095.2| Anopheles gambiae str. PEST ENSANGP00000012074 ... 40 7.3
51dbj|AK101282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
52dbj|AK063477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
53dbj|AK059613.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
54emb|CT571252.9| Mouse DNA sequence from clone RP24-91J7 on chrom... 40 7.3
55gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 7.3
56gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
57emb|AL845355.11| Mouse DNA sequence from clone RP23-330F15 on ch... 40 7.3
58dbj|AB209049.1| Homo sapiens mRNA for nucleoside-diphosphate kin... 40 7.3 
>ref|XM_472198.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1044

 Score =  375 bits (189), Expect = e-100
 Identities = 312/353 (88%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 249
            |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 1037 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 978

                                                                        
Query: 250  tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 309
            |||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 977  tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 918

                                                                        
Query: 310  ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 369
            |||| ||||||||| || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 917  ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 858

                                                                        
Query: 370  gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 429
            || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| 
Sbjct: 857  gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 798

                                                                        
Query: 430  tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 489
            || |||   |  |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 797  tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 738

                                                                 
Query: 490  atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaa 542
            ||||| ||||||| |||||| | |||||||||||| || || ||||| |||||
Sbjct: 737  atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaa 685
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>dbj|AK103713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137H02, full
            insert sequence
          Length = 1289

 Score =  375 bits (189), Expect = e-100
 Identities = 312/353 (88%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 249
            |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 1121 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 1062

                                                                        
Query: 250  tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 309
            |||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 1061 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 1002

                                                                        
Query: 310  ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 369
            |||| ||||||||| || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1001 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 942

                                                                        
Query: 370  gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 429
            || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| 
Sbjct: 941  gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 882

                                                                        
Query: 430  tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 489
            || |||   |  |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 881  tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 822

                                                                 
Query: 490  atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaa 542
            ||||| ||||||| |||||| | |||||||||||| || || ||||| |||||
Sbjct: 821  atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaa 769
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>dbj|AK061349.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F07, full
           insert sequence
          Length = 1158

 Score =  375 bits (189), Expect = e-100
 Identities = 312/353 (88%)
 Strand = Plus / Minus

                                                                       
Query: 190 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 249
           |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 988 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 929

                                                                       
Query: 250 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 309
           |||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 928 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 869

                                                                       
Query: 310 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 369
           |||| ||||||||| || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 868 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 809

                                                                       
Query: 370 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 429
           || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| 
Sbjct: 808 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 749

                                                                       
Query: 430 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 489
           || |||   |  |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 748 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 689

                                                                
Query: 490 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaa 542
           ||||| ||||||| |||||| | |||||||||||| || || ||||| |||||
Sbjct: 688 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaa 636
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  174 bits (88), Expect = 2e-40
 Identities = 139/156 (89%)
 Strand = Plus / Plus

                                                                            
Query: 240      cccattgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcg 299
                |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 18412019 cccattaatatggttgcagtaactggagatctgattggttacaagataaccctccaaacg 18412078

                                                                            
Query: 300      ggatggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctc 359
                 || |||||||||| ||||||||| || || |||||||| |||||||||||||| |||||
Sbjct: 18412079 tgacggctcaggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctc 18412138

                                                    
Query: 360      ctcgccagcagcctttctcgacatgttctcttgcct 395
                ||| |||||||| ||||| | ||| |||||||||||
Sbjct: 18412139 ctctccagcagcttttcttgccatattctcttgcct 18412174



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                            
Query: 462      cttgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttc 521
                |||||| ||||||||||||||| |||||||||| ||||||| |||||| | |||||||||
Sbjct: 18412499 cttgttctgctctgatgaaagatcatccatgcagccaatcagaaattccaagttcctttc 18412558

                                     
Query: 522      cataaagggtgcagtcgacaa 542
                ||| || || ||||| |||||
Sbjct: 18412559 catgaatggagcagttgacaa 18412579



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 393      ccttctcttttgaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagta 452
                |||||||||||| ||||||||||| ||||||||||| || |||   |  |||||||||||
Sbjct: 18412339 ccttctcttttggagccatgcctgctgctgtgactgctgtcttgagacattgcgatagta 18412398

                           
Query: 453      atattggaact 463
                |||||||||||
Sbjct: 18412399 atattggaact 18412409



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 190      tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccc 241
                |||||||| |||||||| ||||| |||||||||||| |||| ||||||||||
Sbjct: 18411595 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccc 18411646
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score =  174 bits (88), Expect = 2e-40
 Identities = 139/156 (89%)
 Strand = Plus / Plus

                                                                          
Query: 240    cccattgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcg 299
              |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 113942 cccattaatatggttgcagtaactggagatctgattggttacaagataaccctccaaacg 114001

                                                                          
Query: 300    ggatggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctc 359
               || |||||||||| ||||||||| || || |||||||| |||||||||||||| |||||
Sbjct: 114002 tgacggctcaggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctc 114061

                                                  
Query: 360    ctcgccagcagcctttctcgacatgttctcttgcct 395
              ||| |||||||| ||||| | ||| |||||||||||
Sbjct: 114062 ctctccagcagcttttcttgccatattctcttgcct 114097



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                          
Query: 462    cttgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttc 521
              |||||| ||||||||||||||| |||||||||| ||||||| |||||| | |||||||||
Sbjct: 114422 cttgttctgctctgatgaaagatcatccatgcagccaatcagaaattccaagttcctttc 114481

                                   
Query: 522    cataaagggtgcagtcgacaa 542
              ||| || || ||||| |||||
Sbjct: 114482 catgaatggagcagttgacaa 114502



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                          
Query: 393    ccttctcttttgaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagta 452
              |||||||||||| ||||||||||| ||||||||||| || |||   |  |||||||||||
Sbjct: 114262 ccttctcttttggagccatgcctgctgctgtgactgctgtcttgagacattgcgatagta 114321

                         
Query: 453    atattggaact 463
              |||||||||||
Sbjct: 114322 atattggaact 114332



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 190    tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccc 241
              |||||||| |||||||| ||||| |||||||||||| |||| ||||||||||
Sbjct: 113518 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccc 113569
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>gb|AY109988.1| Zea mays CL3444_1 mRNA sequence
          Length = 1334

 Score =  170 bits (86), Expect = 3e-39
 Identities = 161/186 (86%)
 Strand = Plus / Plus

                                                                       
Query: 183 ctaatcttcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaacccc 242
           |||||| || ||||| |||||||||| ||||||||||| |||| |||| |||||||||||
Sbjct: 209 ctaatcctcatgcaaggccttcatcaggtatagcctgtcgaaattctgaccagcaacccc 268

                                                                       
Query: 243 attgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcggga 302
            ||||||||||||||||||||  |||||||||| ||||| ||||| |||||||| || ||
Sbjct: 269 gttgatatggttgcagtaactgcagatctgattagttactagatagccctccaatcgtga 328

                                                                       
Query: 303 tggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctc 362
            ||||||||||  ||||| || ||||| |||||||||||||||||||| |  ||||||||
Sbjct: 329 gggctcaggaataggcttaaatataggattggatggatcttcttctggtagtggctcctc 388

                 
Query: 363 gccagc 368
            |||||
Sbjct: 389 accagc 394



 Score =  135 bits (68), Expect = 2e-28
 Identities = 110/124 (88%)
 Strand = Plus / Plus

                                                                       
Query: 404 gaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagtaatattggaact 463
           ||||||||||||| |||||||||||||| |||   || ||||| |  |||||||||||||
Sbjct: 430 gaagccatgcctgctgctgtgactgttgtcttgagagattgcggttataatattggaact 489

                                                                       
Query: 464 tgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttcca 523
           |||| ||||||||||||||| |||||||||||||||||| |||||| | |||||||||||
Sbjct: 490 tgttctgctctgatgaaagatcatccatgcacccaatcagaaattccaagttcctttcca 549

               
Query: 524 taaa 527
           ||||
Sbjct: 550 taaa 553
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>dbj|AP006685.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45M12, TM0378b,
             complete sequence
          Length = 86433

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                         
Query: 291   ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 350
             |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || ||
Sbjct: 76290 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 76349

                                  
Query: 351   caacggctcctcgccagcagc 371
             ||| |||||||| ||||||||
Sbjct: 76350 caaaggctcctccccagcagc 76370
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>dbj|AP004526.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05E07, TM0055,
             complete sequence
          Length = 94516

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                         
Query: 291   ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 350
             |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || ||
Sbjct: 50885 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 50944

                                  
Query: 351   caacggctcctcgccagcagc 371
             ||| |||||||| ||||||||
Sbjct: 50945 caaaggctcctccccagcagc 50965
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>dbj|AP004471.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT15H09, TM0005,
             complete sequence
          Length = 97710

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                         
Query: 291   ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 350
             |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || ||
Sbjct: 80049 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 80108

                                  
Query: 351   caacggctcctcgccagcagc 371
             ||| |||||||| ||||||||
Sbjct: 80109 caaaggctcctccccagcagc 80129
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>ref|NM_213167.1| Danio rerio zgc:85787 (zgc:85787), mRNA
          Length = 3524

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 242 cattgatatggttgcagtaactc 264
           |||||||||||||||||||||||
Sbjct: 999 cattgatatggttgcagtaactc 977
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>gb|BC068386.1| Danio rerio zgc:85787, mRNA (cDNA clone MGC:85787 IMAGE:6961124),
           complete cds
          Length = 3524

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 242 cattgatatggttgcagtaactc 264
           |||||||||||||||||||||||
Sbjct: 999 cattgatatggttgcagtaactc 977
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>gb|AC005191.1|AC005191 Homo sapiens PAC clone RP1-269O5 from Xq23, complete sequence
          Length = 185893

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 68    tatctcattttggcaaaacaaaa 90
             |||||||||||||||||||||||
Sbjct: 25044 tatctcattttggcaaaacaaaa 25022
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>gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, complete sequence
          Length = 187701

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 386    tctcttgccttctcttttgaagccatgcctgttg 419
              |||||||| ||||||||||||||||  |||||||
Sbjct: 138178 tctcttgcattctcttttgaagccagtcctgttg 138211
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>gb|AC127682.4| Mus musculus BAC clone RP24-170O17 from 8, complete sequence
          Length = 144298

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 386   tctcttgccttctcttttgaagccatgcctgttg 419
             |||||||| ||||||||||||||||  |||||||
Sbjct: 15319 tctcttgcattctcttttgaagccagtcctgttg 15286
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>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence
          Length = 208855

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 386   tctcttgccttctcttttgaagccatgcctgttg 419
             |||||||| ||||||||||||||||  |||||||
Sbjct: 78051 tctcttgcattctcttttgaagccagtcctgttg 78084
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>gb|AY704216.1| Mus musculus reelin (Reln) mRNA, partial cds
          Length = 2241

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 253  ttgcagtaactcgagatctga 273
            |||||||||||||||||||||
Sbjct: 1271 ttgcagtaactcgagatctga 1291
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>ref|XM_359934.1| Magnaporthe grisea 70-15 hypothetical protein (MG04843.4) partial
           mRNA
          Length = 2178

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 345 ttctggcaacggctcctcgcc 365
           |||||||||||||||||||||
Sbjct: 285 ttctggcaacggctcctcgcc 265
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>ref|NM_011261.1| Mus musculus reelin (Reln), mRNA
          Length = 11673

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 253  ttgcagtaactcgagatctga 273
            |||||||||||||||||||||
Sbjct: 4145 ttgcagtaactcgagatctga 4165
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 253    ttgcagtaactcgagatctga 273
              |||||||||||||||||||||
Sbjct: 211802 ttgcagtaactcgagatctga 211782
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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 253   ttgcagtaactcgagatctga 273
             |||||||||||||||||||||
Sbjct: 53383 ttgcagtaactcgagatctga 53363
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>gb|AC006629.1| Caenorhabditis elegans cosmid F12E12, complete sequence
          Length = 27659

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 452   aatattggaacttgttttgct 472
             |||||||||||||||||||||
Sbjct: 24205 aatattggaacttgttttgct 24225
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>gb|U24703.1|MMU24703 Mus musculus reelin mRNA, complete cds
          Length = 11673

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 253  ttgcagtaactcgagatctga 273
            |||||||||||||||||||||
Sbjct: 4145 ttgcagtaactcgagatctga 4165
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>ref|XM_477946.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1421

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 386 tctcttgccttctcttttgaagcc 409
           ||||||||||||||||||| ||||
Sbjct: 802 tctcttgccttctcttttgcagcc 779
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>ref|XM_506311.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0027N13.110
           mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 386 tctcttgccttctcttttgaagcc 409
           ||||||||||||||||||| ||||
Sbjct: 798 tctcttgccttctcttttgcagcc 775
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>gb|AC121795.3| Mus musculus BAC clone RP23-421P13 from chromosome 17, complete
             sequence
          Length = 204354

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   cctttctcgacatgttctcttgcc 394
             |||||||| |||||||||||||||
Sbjct: 78184 cctttctccacatgttctcttgcc 78207
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>gb|AC121950.2| Mus musculus BAC clone RP24-216M19 from 6, complete sequence
          Length = 170988

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     acacaacctcaaaacaaatg 44
              ||||||||||||||||||||
Sbjct: 163637 acacaacctcaaaacaaatg 163618
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>emb|Z99758.8|HS800F24 Human DNA sequence from clone RP4-800F24 on chromosome 1q24 Contains
             part of the NME7 gene for protein expressed in
             non-metastatic cells 7 (nucleoside-diphosphate kinase) and
             a novel gene, complete sequence
          Length = 140788

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   ggttgcagtaactcgagatc 270
             ||||||||||||||||||||
Sbjct: 95013 ggttgcagtaactcgagatc 95032
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>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel
              gene, the 5' end of the CAMTA1 gene for calmodulin binding
              transcription activator 1, a ribosomal protein L37 (RPL37)
              pseudogene and a CpG island, complete sequence
          Length = 204394

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    tcctcgccagcagcctttct 377
              ||||||||||||||||||||
Sbjct: 172953 tcctcgccagcagcctttct 172934
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>emb|BX037236.1|CNS090W8 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA9CE02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1008

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 724 atagggttggatagatcttcttct 747
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>emb|BX037235.1|CNS090W7 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA9CE02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1044

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 481 atagggttggatagatcttcttct 458
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>emb|BX029240.1|CNS08UQ4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA43CH02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 964

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 723 atagggttggatagatcttcttct 746
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>emb|BX029239.1|CNS08UQ3 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA43CH02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 958

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 481 atagggttggatagatcttcttct 458
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>emb|BX024216.1|CNS08QUK Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA36DG06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 288

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 246 atagggttggatagatcttcttct 223
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>gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence
          Length = 202402

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  aactcgagatctgattggtt 279
            ||||||||||||||||||||
Sbjct: 2143 aactcgagatctgattggtt 2162
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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   catgttctcttgccttctct 400
             ||||||||||||||||||||
Sbjct: 40046 catgttctcttgccttctct 40065
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>gb|AC019026.12| Mus musculus chromosome 6 clone RP23-188E5 strain C57BL6/J, complete
             sequence
          Length = 157996

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    acacaacctcaaaacaaatg 44
             ||||||||||||||||||||
Sbjct: 87423 acacaacctcaaaacaaatg 87404
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>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    aaaataggcaatgagcatgc 106
             ||||||||||||||||||||
Sbjct: 46470 aaaataggcaatgagcatgc 46489
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>gb|AC159254.2| Mus musculus BAC clone RP24-112C23 from chromosome 12, complete
             sequence
          Length = 163438

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ttgaagccatgcctgttgct 421
             ||||||||||||||||||||
Sbjct: 21512 ttgaagccatgcctgttgct 21531
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>ref|NM_058991.1| Caenorhabditis elegans D1007.13 (D1007.13) mRNA, complete cds
          Length = 801

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 80  gcaaaacaaaataggcaatgagca 103
           |||||||||||| |||||||||||
Sbjct: 131 gcaaaacaaaattggcaatgagca 108
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>dbj|AK082689.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230087D09 product:reelin, full
           insert sequence
          Length = 2555

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 tgcagtaactcgagatctga 273
           ||||||||||||||||||||
Sbjct: 677 tgcagtaactcgagatctga 696
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 87       aaaataggcaatgagcatgc 106
                ||||||||||||||||||||
Sbjct: 13354093 aaaataggcaatgagcatgc 13354112
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 386      tctcttgccttctcttttgaagcc 409
                ||||||||||||||||||| ||||
Sbjct: 15816846 tctcttgccttctcttttgcagcc 15816869
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>gb|AC010200.8| Homo sapiens 12 BAC RP11-575G13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158149

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    ggttgcagtaactcgagatc 270
              ||||||||||||||||||||
Sbjct: 121941 ggttgcagtaactcgagatc 121960
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>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0027N13
          Length = 179669

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 386   tctcttgccttctcttttgaagcc 409
             ||||||||||||||||||| ||||
Sbjct: 56360 tctcttgccttctcttttgcagcc 56383
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>emb|AL928570.14| Mouse DNA sequence from clone RP23-183A10 on chromosome X, complete
             sequence
          Length = 91550

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tcattttggcaaaacaaaat 91
             ||||||||||||||||||||
Sbjct: 41154 tcattttggcaaaacaaaat 41173
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>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
              sequence
          Length = 189900

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cagtgttaagttaaaatctc 161
              ||||||||||||||||||||
Sbjct: 122519 cagtgttaagttaaaatctc 122538
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>gb|AC157091.6| Mus musculus 6 BAC RP24-359O2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 206538

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    acacaacctcaaaacaaatg 44
             ||||||||||||||||||||
Sbjct: 95627 acacaacctcaaaacaaatg 95608
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>ref|XM_311452.2| Anopheles gambiae str. PEST ENSANGP00000018551
           (ENSANGG00000016062), partial mRNA
          Length = 1479

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 103 atagggttggatagatcttcttct 80
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>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence
          Length = 107815

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    catgttctcttgccttctct 400
              ||||||||||||||||||||
Sbjct: 103145 catgttctcttgccttctct 103126
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>ref|XM_307095.2| Anopheles gambiae str. PEST ENSANGP00000012074
           (ENSANGG00000009585), partial mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 atagggttggatggatcttcttct 348
           |||||||||||| |||||||||||
Sbjct: 37  atagggttggatagatcttcttct 14
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>dbj|AK101282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033D05, full
           insert sequence
          Length = 1419

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 386 tctcttgccttctcttttgaagcc 409
           ||||||||||||||||||| ||||
Sbjct: 800 tctcttgccttctcttttgcagcc 777
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>dbj|AK063477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B04, full
           insert sequence
          Length = 2160

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 386 tctcttgccttctcttttgaagcc 409
           ||||||||||||||||||| ||||
Sbjct: 798 tctcttgccttctcttttgcagcc 775
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>dbj|AK059613.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F11, full
           insert sequence
          Length = 762

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 386 tctcttgccttctcttttgaagcc 409
           ||||||||||||||||||| ||||
Sbjct: 119 tctcttgccttctcttttgcagcc 96
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>emb|CT571252.9| Mouse DNA sequence from clone RP24-91J7 on chromosome 12, complete
             sequence
          Length = 189925

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ttgaagccatgcctgttgct 421
             ||||||||||||||||||||
Sbjct: 67359 ttgaagccatgcctgttgct 67378
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      tcattttggcaaaacaaaat 91
               ||||||||||||||||||||
Sbjct: 1987702 tcattttggcaaaacaaaat 1987683
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 87       aaaataggcaatgagcatgc 106
                ||||||||||||||||||||
Sbjct: 13361433 aaaataggcaatgagcatgc 13361452
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>emb|AL845355.11| Mouse DNA sequence from clone RP23-330F15 on chromosome 2, complete
             sequence
          Length = 97155

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   aactcgagatctgattggtt 279
             ||||||||||||||||||||
Sbjct: 78132 aactcgagatctgattggtt 78113
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>dbj|AB209049.1| Homo sapiens mRNA for nucleoside-diphosphate kinase 7 isoform a
            variant protein
          Length = 4897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  ggttgcagtaactcgagatc 270
            ||||||||||||||||||||
Sbjct: 1230 ggttgcagtaactcgagatc 1211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,030,993
Number of Sequences: 3902068
Number of extensions: 5030993
Number of successful extensions: 88474
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88259
Number of HSP's gapped (non-prelim): 209
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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