Clone Name | rbasd0b05 |
---|---|
Clone Library Name | barley_pub |
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 37.7 bits (86), Expect = 0.021 Identities = 17/29 (58%), Positives = 24/29 (82%) Frame = -1 Query: 542 VRMMREEFELTMALGGCTKLSDINPRTHL 456 ++MMR+EFELTMAL GC L +I+ R+H+ Sbjct: 327 LQMMRDEFELTMALSGCRSLKEIS-RSHI 354
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 37.4 bits (85), Expect = 0.027 Identities = 17/29 (58%), Positives = 23/29 (79%) Frame = -1 Query: 542 VRMMREEFELTMALGGCTKLSDINPRTHL 456 ++M+R+EFELTMAL GC LS+I R H+ Sbjct: 327 LQMLRDEFELTMALSGCRSLSEIT-RNHI 354
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 36.2 bits (82), Expect = 0.061 Identities = 16/29 (55%), Positives = 23/29 (79%) Frame = -1 Query: 542 VRMMREEFELTMALGGCTKLSDINPRTHL 456 ++M+R+EFELTMAL GC L +I+ R H+ Sbjct: 327 LQMLRDEFELTMALSGCRSLKEIS-RNHI 354
>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5| Length = 453 Score = 34.3 bits (77), Expect = 0.23 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 146 NTIWCSRCEIWWKWRDVPVDKY 211 N+ WC C + W+WR +P D Y Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433
>CLTR2_PIG (Q95N03) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 345 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -1 Query: 200 PARLAISTIFRTDYTILYFHVLLGPHVY---THRFCIYHTLSSSKAYLDTGIIWIHV 39 P R+ +++ Y+ +YF +L + H F + HT S A++ G+IWI + Sbjct: 111 PCRIMSYSMYVNMYSSIYFLTVLSVVRFLATVHPFRLLHTTSIKNAWILCGVIWIFI 167
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 217 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 345 N+S+T ++PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 217 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 345 N+S++ +RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>GALR3_RAT (O88626) Galanin receptor type 3 (GAL3-R) (GALR3)| Length = 370 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -3 Query: 525 GVRAHHGARRVHQAQRHQPANTSSPRATASDARCRGCDQEP 403 G R H R H+A R +S P DAR RG EP Sbjct: 309 GRRRHRHHHRAHRALRRVQPASSGPAGYPGDARPRGWSMEP 349
>GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3)| Length = 370 Score = 29.6 bits (65), Expect = 5.7 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -3 Query: 528 GGVRAHHGARRVHQAQRHQPANTSSPRATASDARCRGCDQEP 403 G R H R+H+A R +S P DAR RG EP Sbjct: 309 GHRRHRHHHHRLHRALRRVQPASSGPAGYPGDARPRGWSMEP 350
>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor| Length = 61 Score = 29.6 bits (65), Expect = 5.7 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = +3 Query: 93 MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 269 M N +S+ Y Q D + VVG KY GNG C T + + +G + AG RLA+ Sbjct: 1 MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55
>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 374 Score = 29.6 bits (65), Expect = 5.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 92 YDKYRIDECIRADPIGHGNTIWCSRCE 172 YD +C ++DP HG IWCS C+ Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135
>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1045 Score = 29.3 bits (64), Expect = 7.5 Identities = 19/82 (23%), Positives = 37/82 (45%) Frame = -3 Query: 537 HDAGGVRAHHGARRVHQAQRHQPANTSSPRATASDARCRGCDQEPTTHDALIAVSTHGRA 358 HD R HHG +R+ +++R + +S PR R R D + +++S+ + Sbjct: 610 HDQKNHRKHHGKKRM-KSKRSRSRESSRPRGRRDKKRSRTRDSSWSRRSQTLSLSSESTS 668 Query: 357 YAC*PVSTATQRNARNNYSELY 292 + S +R +R+ + Y Sbjct: 669 RSRSRSSDHGKRRSRSRNRDRY 690
>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 309 Score = 29.3 bits (64), Expect = 7.5 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = -1 Query: 194 RLAISTIFRTDYTILYFHVLLGP---HVYTHRFCIYHTLSSSKAYLDTGIIWIHV 39 R+ +++ YT +YF +L H F ++H S A++ GIIW+ + Sbjct: 96 RVMSYSLYVNMYTSIYFLTVLSVVRFQATVHPFRMFHVTSVRSAWILCGIIWVFI 150
>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 434 Score = 29.3 bits (64), Expect = 7.5 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +1 Query: 169 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 342 RN E+ARRAGR + + A RP P DT + AD + D+ I V GGY Sbjct: 24 RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81 Query: 343 WLA 351 LA Sbjct: 82 TLA 84
>Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2059c| Length = 341 Score = 28.9 bits (63), Expect = 9.7 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 286 VDIEFAVIIACVALRCGGYWLACICPAVRRDGDE 387 +D+ A ++ + CGG +A P ++ DGDE Sbjct: 113 LDVNTATLVGVGSSICGGSAIAATAPVIQADGDE 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,413,740 Number of Sequences: 219361 Number of extensions: 1467361 Number of successful extensions: 4166 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4032 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4157 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)