ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.... 38 0.021
2GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxid... 37 0.027
3GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxid... 36 0.061
4YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5 34 0.23
5CLTR2_PIG (Q95N03) Cysteinyl leukotriene receptor 2 (CysLTR2) 31 2.0
6SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/gluco... 30 3.3
7SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucl... 30 3.3
8GALR3_RAT (O88626) Galanin receptor type 3 (GAL3-R) (GALR3) 30 3.3
9GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3) 30 5.7
10MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor 30 5.7
11PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Prot... 30 5.7
12TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.... 29 7.5
13CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2) 29 7.5
14DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH) 29 7.5
15Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2... 29 9.7

>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)|
           (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy
           acid oxidase)
          Length = 369

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = -1

Query: 542 VRMMREEFELTMALGGCTKLSDINPRTHL 456
           ++MMR+EFELTMAL GC  L +I+ R+H+
Sbjct: 327 LQMMRDEFELTMALSGCRSLKEIS-RSHI 354



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>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC|
           1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain
           alpha-hydroxy acid oxidase 1)
          Length = 367

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = -1

Query: 542 VRMMREEFELTMALGGCTKLSDINPRTHL 456
           ++M+R+EFELTMAL GC  LS+I  R H+
Sbjct: 327 LQMLRDEFELTMALSGCRSLSEIT-RNHI 354



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>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC|
           1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain
           alpha-hydroxy acid oxidase 2)
          Length = 367

 Score = 36.2 bits (82), Expect = 0.061
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = -1

Query: 542 VRMMREEFELTMALGGCTKLSDINPRTHL 456
           ++M+R+EFELTMAL GC  L +I+ R H+
Sbjct: 327 LQMLRDEFELTMALSGCRSLKEIS-RNHI 354



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>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5|
          Length = 453

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 NTIWCSRCEIWWKWRDVPVDKY 211
           N+ WC  C + W+WR +P D Y
Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433



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>CLTR2_PIG (Q95N03) Cysteinyl leukotriene receptor 2 (CysLTR2)|
          Length = 345

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 200 PARLAISTIFRTDYTILYFHVLLGPHVY---THRFCIYHTLSSSKAYLDTGIIWIHV 39
           P R+   +++   Y+ +YF  +L    +    H F + HT S   A++  G+IWI +
Sbjct: 111 PCRIMSYSMYVNMYSSIYFLTVLSVVRFLATVHPFRLLHTTSIKNAWILCGVIWIFI 167



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>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose|
           cotransporter 2) (Low affinity sodium-glucose
           cotransporter)
          Length = 670

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 217 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 345
           N+S+T ++PRPD++  HL  D V  D+ +  ++  + +  G YW
Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289



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>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside|
           cotransporter)
          Length = 672

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 217 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 345
           N+S++ +RPRPD++  HL  D V  D+ +  ++  + +  G YW
Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291



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>GALR3_RAT (O88626) Galanin receptor type 3 (GAL3-R) (GALR3)|
          Length = 370

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 525 GVRAHHGARRVHQAQRHQPANTSSPRATASDARCRGCDQEP 403
           G R H    R H+A R     +S P     DAR RG   EP
Sbjct: 309 GRRRHRHHHRAHRALRRVQPASSGPAGYPGDARPRGWSMEP 349



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>GALR3_MOUSE (O88853) Galanin receptor type 3 (GAL3-R) (GALR3)|
          Length = 370

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 528 GGVRAHHGARRVHQAQRHQPANTSSPRATASDARCRGCDQEP 403
           G  R  H   R+H+A R     +S P     DAR RG   EP
Sbjct: 309 GHRRHRHHHHRLHRALRRVQPASSGPAGYPGDARPRGWSMEP 350



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>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor|
          Length = 61

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 93  MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 269
           M N +S+  Y   Q D +    VVG KY GNG  C  T +   + +G  + AG  RLA+
Sbjct: 1   MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55



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>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 374

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  YDKYRIDECIRADPIGHGNTIWCSRCE 172
           YD     +C ++DP  HG  IWCS C+
Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135



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>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1045

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = -3

Query: 537 HDAGGVRAHHGARRVHQAQRHQPANTSSPRATASDARCRGCDQEPTTHDALIAVSTHGRA 358
           HD    R HHG +R+ +++R +   +S PR      R R  D   +     +++S+   +
Sbjct: 610 HDQKNHRKHHGKKRM-KSKRSRSRESSRPRGRRDKKRSRTRDSSWSRRSQTLSLSSESTS 668

Query: 357 YAC*PVSTATQRNARNNYSELY 292
            +    S   +R +R+   + Y
Sbjct: 669 RSRSRSSDHGKRRSRSRNRDRY 690



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>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)|
          Length = 309

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 194 RLAISTIFRTDYTILYFHVLLGP---HVYTHRFCIYHTLSSSKAYLDTGIIWIHV 39
           R+   +++   YT +YF  +L         H F ++H  S   A++  GIIW+ +
Sbjct: 96  RVMSYSLYVNMYTSIYFLTVLSVVRFQATVHPFRMFHVTSVRSAWILCGIIWVFI 150



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>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 434

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 169 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 342
           RN  E+ARRAGR + +     A RP P  DT    + AD + D+     I  V    GGY
Sbjct: 24  RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81

Query: 343 WLA 351
            LA
Sbjct: 82  TLA 84



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>Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2059c|
          Length = 341

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 286 VDIEFAVIIACVALRCGGYWLACICPAVRRDGDE 387
           +D+  A ++   +  CGG  +A   P ++ DGDE
Sbjct: 113 LDVNTATLVGVGSSICGGSAIAATAPVIQADGDE 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,413,740
Number of Sequences: 219361
Number of extensions: 1467361
Number of successful extensions: 4166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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