Clone Name | rbasd0b05 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 9e-18 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||||||| | |||||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 32328144 cgaggcggtcggcgtcggtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 32328086 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 32328085 ccgctgagcgccatggtgagctcgaactcctcccgcatcatccgca 32328040
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 99.6 bits (50), Expect = 9e-18 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||||||| | |||||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 61911 cgaggcggtcggcgtcggtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 61853 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 61852 ccgctgagcgccatggtgagctcgaactcctcccgcatcatccgca 61807
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 9e-18 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||||||| | |||||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 32418654 cgaggcggtcggcgtcggtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 32418596 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 32418595 ccgctgagcgccatggtgagctcgaactcctcccgcatcatccgca 32418550
>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full insert sequence Length = 1526 Score = 99.6 bits (50), Expect = 9e-18 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||||||| | |||||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 1162 cgaggcggtcggcgtcggtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 1104 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 1103 ccgctgagcgccatggtgagctcgaactcctcccgcatcatccgca 1058
>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full insert sequence Length = 1522 Score = 99.6 bits (50), Expect = 9e-18 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||||||| | |||||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 1158 cgaggcggtcggcgtcggtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 1100 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 1099 ccgctgagcgccatggtgagctcgaactcctcccgcatcatccgca 1054
>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full insert sequence Length = 1586 Score = 99.6 bits (50), Expect = 9e-18 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||||||| | |||||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 1222 cgaggcggtcggcgtcggtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 1164 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 1163 ccgctgagcgccatggtgagctcgaactcctcccgcatcatccgca 1118
>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds Length = 1473 Score = 75.8 bits (38), Expect = 1e-10 Identities = 90/106 (84%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 436 cgaggcggtcgccctcggtgaagatgtgttcgcgggttgatgtcgctgagcttggtgcac 495 ||||||| ||| | || ||| ||||||| ||||||| ||||||| |||| |||||| Sbjct: 1128 cgaggcgttcggcgtccgtgtagatgtgggcgcgggt-gatgtcggcgagcgaggtgcat 1070 Query: 496 ccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||| || ||||||||||||||||||||||||||||||||| |||| Sbjct: 1069 ccgctgaacgccatggtgagctcgaactcctcccgcatcatccgca 1024
>gb|AY108197.1| Zea mays PCO065133 mRNA sequence Length = 1667 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgca 541 |||||| |||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct: 1249 ggtgcagccgctgagcgccatggtgagctcgaactcgtcccgcagcatgcgca 1197
>ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1439 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 1101 ggtgcagccgctgagcgccatggtgagctcgaactc 1066
>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA Length = 1501 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 1142 ggtgcagccgctgagcgccatggtgagctcgaactc 1107
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 2833136 ggtgcagccgctgagcgccatggtgagctcgaactc 2833101
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 136697 ggtgcagccgctgagcgccatggtgagctcgaactc 136662
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 3423 ggtgcagccgctgagcgccatggtgagctcgaactc 3388
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full insert sequence Length = 1738 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 1400 ggtgcagccgctgagcgccatggtgagctcgaactc 1365
>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full insert sequence Length = 1439 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 1101 ggtgcagccgctgagcgccatggtgagctcgaactc 1066
>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full insert sequence Length = 1501 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 489 ggtgcacccgccgagcgccatggtgagctcgaactc 524 |||||| |||| |||||||||||||||||||||||| Sbjct: 1142 ggtgcagccgctgagcgccatggtgagctcgaactc 1107
>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds Length = 1486 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 505 gccatggtgagctcgaactcctc 527 ||||||||||||||||||||||| Sbjct: 1115 gccatggtgagctcgaactcctc 1093
>gb|AC026116.26| Homo sapiens 12 BAC RP11-1022B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177267 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 48 ccagataataccagtatccaaa 69 |||||||||||||||||||||| Sbjct: 22904 ccagataataccagtatccaaa 22883
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 426 agcgggcgtccgaggcggtcgc 447 |||||||||||||||||||||| Sbjct: 277779 agcgggcgtccgaggcggtcgc 277800 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ctcggcagcgggcgtccgag 439 |||||||||||||||||||| Sbjct: 5814716 ctcggcagcgggcgtccgag 5814697
>ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 490 gtgcacccgccgagcgccatggtgagctc 518 ||||| |||| |||||||||||||||||| Sbjct: 1034 gtgcatccgctgagcgccatggtgagctc 1006
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 490 gtgcacccgccgagcgccatggtgagctc 518 ||||| |||| |||||||||||||||||| Sbjct: 59360 gtgcatccgctgagcgccatggtgagctc 59332
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 490 gtgcacccgccgagcgccatggtgagctc 518 ||||| |||| |||||||||||||||||| Sbjct: 31726090 gtgcatccgctgagcgccatggtgagctc 31726062
>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full insert sequence Length = 1435 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 490 gtgcacccgccgagcgccatggtgagctc 518 ||||| |||| |||||||||||||||||| Sbjct: 1103 gtgcatccgctgagcgccatggtgagctc 1075
>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full insert sequence Length = 1427 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 490 gtgcacccgccgagcgccatggtgagctc 518 ||||| |||| |||||||||||||||||| Sbjct: 1107 gtgcatccgctgagcgccatggtgagctc 1079
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggtgcgaaatatggtggaaatggcgaga 192 |||||||||| |||||||||||| |||| Sbjct: 29983 ggtgcgaaatttggtggaaatggagaga 29956
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggtgcgaaatatggtggaaatggcgaga 192 |||||||||| |||||||||||| |||| Sbjct: 158442 ggtgcgaaatttggtggaaatggagaga 158415
>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15 Length = 63598 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtgcgttgcgttgcgttgcg 334 |||||||||||||||||||| Sbjct: 42541 gtgcgttgcgttgcgttgcg 42560
>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete sequence Length = 186135 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 acatggaaatacaatatggt 158 |||||||||||||||||||| Sbjct: 166707 acatggaaatacaatatggt 166688
>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174645 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gtgcgttgcgttgcgttgcg 334 |||||||||||||||||||| Sbjct: 26559 gtgcgttgcgttgcgttgcg 26540
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 atgtatgataaatacagaat 108 |||||||||||||||||||| Sbjct: 22849581 atgtatgataaatacagaat 22849562
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggtgcgaaatatggtggaaatggcgaga 192 |||||||||| |||||||||||| |||| Sbjct: 17868791 ggtgcgaaatttggtggaaatggagaga 17868764
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone BACR48M01, complete sequence Length = 188272 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtgcgttgcgttgcgttgcg 334 |||||||||||||||||||| Sbjct: 77465 gtgcgttgcgttgcgttgcg 77484
>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full insert sequence Length = 2833 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtgcgttgcgttgcgttgcg 334 |||||||||||||||||||| Sbjct: 859 gtgcgttgcgttgcgttgcg 878
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 518 cgaactcctcccgcatcatgcgca 541 |||| ||||||||||||||||||| Sbjct: 2682575 cgaaatcctcccgcatcatgcgca 2682552
>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the complete sequence Length = 290640 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gtgcgttgcgttgcgttgcg 334 |||||||||||||||||||| Sbjct: 5027 gtgcgttgcgttgcgttgcg 5008
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtgcgttgcgttgcgttgcg 334 |||||||||||||||||||| Sbjct: 111005 gtgcgttgcgttgcgttgcg 111024
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 165 ggtgcgaaatatggtggaaatggcgaga 192 |||||||||| |||||||||||| |||| Sbjct: 17963108 ggtgcgaaatttggtggaaatggagaga 17963081
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 atgtatgataaatacagaat 108 |||||||||||||||||||| Sbjct: 22777772 atgtatgataaatacagaat 22777753
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 atgtatgataaatacagaat 108 |||||||||||||||||||| Sbjct: 107263 atgtatgataaatacagaat 107282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,086,662 Number of Sequences: 3902068 Number of extensions: 3086662 Number of successful extensions: 51467 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51085 Number of HSP's gapped (non-prelim): 370 length of query: 542 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 519 effective length of database: 17,143,297,704 effective search space: 8897371508376 effective search space used: 8897371508376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)