ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd0b02 |
|---|---|
| Clone Library Name | barley_pub |
>S23A2_HUMAN (Q9UGH3) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) Length = 650 Score = 69.7 bits (169), Expect = 7e-12 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Frame = -3 Query: 654 ASIPLPIFAGMYCVFFAYVGACGLSFLQFCNLNSFRTKXXXXXXXXXXXSVPQYFNEYAS 475 AS+P P+ ++C F + A GLS LQF +LNS R +P Y + Sbjct: 480 ASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ--- 536 Query: 474 VSGHGPVHTGARWFNDMINVPFSNKPFVAGLVAYFLDNTMHLHQSAVRKDRGYHWWDK-F 298 P+ TG + ++NV + FV G VA+ LDNT+ ++RG W K Sbjct: 537 ----NPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTI----PGTPEERGIRKWKKGV 588 Query: 297 RSFKKDARSEEFYSLPFNLN 238 K E Y+LPF +N Sbjct: 589 GKGNKSLDGMESYNLPFGMN 608
>S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) Length = 647 Score = 69.7 bits (169), Expect = 7e-12 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Frame = -3 Query: 654 ASIPLPIFAGMYCVFFAYVGACGLSFLQFCNLNSFRTKXXXXXXXXXXXSVPQYFNEYAS 475 AS+P P+ ++C F + A GLS LQF +LNS R +P Y + Sbjct: 477 ASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ--- 533 Query: 474 VSGHGPVHTGARWFNDMINVPFSNKPFVAGLVAYFLDNTMHLHQSAVRKDRGYHWWDK-F 298 P+ TG + ++NV + FV G VA+ LDNT+ ++RG W K Sbjct: 534 ----NPLVTGITGIDQILNVLLTTAMFVGGCVAFILDNTI----PGTPEERGIKKWKKGV 585 Query: 297 RSFKKDARSEEFYSLPFNLN 238 K E Y+LPF +N Sbjct: 586 SKGSKSLDGMESYNLPFGMN 605
>S23A2_RAT (Q9WTW8) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (Na(+)/L-ascorbic acid transporter 2) Length = 592 Score = 69.7 bits (169), Expect = 7e-12 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 1/140 (0%) Frame = -3 Query: 654 ASIPLPIFAGMYCVFFAYVGACGLSFLQFCNLNSFRTKXXXXXXXXXXXSVPQYFNEYAS 475 AS+P P+ ++C F + A GLS LQF +LNS R +P Y + Sbjct: 422 ASLPDPVLGALFCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ--- 478 Query: 474 VSGHGPVHTGARWFNDMINVPFSNKPFVAGLVAYFLDNTMHLHQSAVRKDRGYHWWDK-F 298 P+ TG + ++NV + FV G VA+ LDNT+ ++RG W K Sbjct: 479 ----NPLVTGITGIDQVLNVLLTTAMFVGGCVAFILDNTI----PGTPEERGIKKWKKGV 530 Query: 297 RSFKKDARSEEFYSLPFNLN 238 K E Y+LPF +N Sbjct: 531 SKGNKSLDGMESYNLPFGMN 550
>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 605 Score = 63.5 bits (153), Expect = 5e-10 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Frame = -3 Query: 654 ASIPLPIFAGMYCVFFAYVGACGLSFLQFCNLNSFRTKXXXXXXXXXXXSVPQYFNEYAS 475 AS+P PI GM+C F + A GLS LQF ++NS R ++P Y + Sbjct: 428 ASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLD---- 483 Query: 474 VSGHGPVHTGARWFNDMINVPFSNKPFVAGLVAYFLDNTMHLHQSAVRKDRG-YHWWDKF 298 S G ++TG + ++ V + + FV G +A+ LDNT+ ++RG W Sbjct: 484 -SNPGAINTGIPEVDQILTVLLTTEMFVGGCLAFILDNTV----PGSPEERGLIQWKAGA 538 Query: 297 RSFKKDARSEEFYSLPFNL 241 + + + S + Y PF + Sbjct: 539 HANSETSASLKSYDFPFGM 557
>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) Length = 604 Score = 63.2 bits (152), Expect = 7e-10 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 1/139 (0%) Frame = -3 Query: 654 ASIPLPIFAGMYCVFFAYVGACGLSFLQFCNLNSFRTKXXXXXXXXXXXSVPQYFNEYAS 475 AS+P PI GM+C F + A GLS LQF ++NS R ++P Y + Sbjct: 428 ASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLD---- 483 Query: 474 VSGHGPVHTGARWFNDMINVPFSNKPFVAGLVAYFLDNTMHLHQSAVRKDRG-YHWWDKF 298 S G ++TG + ++ V + + FV G +A+ LDNT+ ++RG W Sbjct: 484 -SNPGAINTGVPEVDQILTVLLTTEMFVGGCLAFILDNTV----PGSPEERGLIQWKAGA 538 Query: 297 RSFKKDARSEEFYSLPFNL 241 + + S + Y PF + Sbjct: 539 HANSETLASLKSYDFPFGM 557
>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 598 Score = 61.2 bits (147), Expect = 3e-09 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Frame = -3 Query: 654 ASIPLPIFAGMYCVFFAYVGACGLSFLQFCNLNSFRTKXXXXXXXXXXXSVPQYFNEYAS 475 AS+P PI GM+C F + A GLS LQF ++NS R ++P Y Sbjct: 421 ASLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLE---- 476 Query: 474 VSGHGPVHTGARWFNDMINVPFSNKPFVAGLVAYFLDNTMHLHQSAVRKDRGYHWWDKFR 295 S G ++TG + ++ V + + FV G +A+ LDNT+ ++RG W Sbjct: 477 -SNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTV----PGSPEERGLIQWKAGA 531 Query: 294 SFKKDARSE-EFYSLPFNL 241 D S + Y P + Sbjct: 532 HANSDMSSSLKSYDFPIGM 550
>DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)| Length = 297 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +1 Query: 394 ERLVREGHVDHVVEPSSARVHRAMARDGGVLVEVLRNRYADEEGEAQD 537 ERL+REG VD V+ + VH A+ GG+ V L R D G D Sbjct: 68 ERLIREGLVDAVITSGANVVHDALDALGGIHV-CLGERNVDGYGRVHD 114
>BLAC_STRAL (P14559) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)| Length = 314 Score = 30.8 bits (68), Expect = 3.7 Identities = 21/57 (36%), Positives = 27/57 (47%) Frame = +1 Query: 439 SSARVHRAMARDGGVLVEVLRNRYADEEGEAQDELGPEAVQVAELKEAQTTRTNICE 609 SSA V R + R+G L R Y ++ E D GPE + L AQ T +CE Sbjct: 95 SSAAVLRDLDRNGEFLSR--RILYTQDDVEQADGAGPETGKPQNLANAQLTVEELCE 149
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 30.4 bits (67), Expect = 4.9 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = +1 Query: 43 NEHGVPTGPTKS-----ISSINTRNRRAAAPQKLDRSS*QDHVHPVHEQSGPAAPFPATG 207 N+ +P PT+ SS NT R P +LD SS H HP S P P T Sbjct: 327 NQPPLPPIPTRDDMSNYSSSRNTPLVRRDRPSRLDSSSPNSHPHPSGLNSPKLPPLPTTS 386 Query: 208 IARSDRR 228 + + R Sbjct: 387 NSNFNSR 393
>DUOX1_CAEEL (O61213) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (DUOX1)| (NADPH thyroid oxidase 1) (Blistered cuticle protein 3) Length = 1497 Score = 30.4 bits (67), Expect = 4.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 351 LHQSAVRKDRGYHWWDKFRSFKKDARSEEFYSLPFNLNKFFPSV 220 LH + V D Y +D F + D ++ LPFN + PS+ Sbjct: 906 LHYAGVSNDAKYLTYDDFNALFSDIPDKQPVGLPFNRKNYQPSI 949
>CAH9_HUMAN (Q16790) Carbonic anhydrase 9 precursor (EC 4.2.1.1) (Carbonic| anhydrase IX) (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1) Length = 459 Score = 30.4 bits (67), Expect = 4.9 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Frame = +1 Query: 379 HQPRHERLVREGHVDHVVEPSSARVHRAMARDGGVLVEVLRNRYADEEGEAQDELGPEAV 558 H R E HV H+ + ARV A+ R GG+ V EE A ++L Sbjct: 239 HTVEGHRFPAEIHVVHL-STAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLE 297 Query: 559 QVAEL-KEAQTTRTNICEENTVHASKYRQWNG 651 ++AE E Q +I S+Y Q+ G Sbjct: 298 EIAEEGSETQVPGLDISALLPSDFSRYFQYEG 329
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.0 bits (66), Expect = 6.3 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = -2 Query: 469 GPWPGAHGR*MVQRHDQRALLEQAVRGGAGGLLPGQHDAPAPERGEEGQRVPLVGQVQEL 290 GP PG G+ + H+ + + GG G L PG E+GE+G V ++G V+ + Sbjct: 128 GP-PGPRGKPGMSGHNG-SRGDPGFPGGRGALGPGGPLGHPGEKGEKGNSVFILGAVKGI 185 Query: 289 QEGRQERG 266 Q R + G Sbjct: 186 QGDRGDPG 193
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -2 Query: 379 GLLPGQHDAPAPERGEEGQRVPLVGQVQE 293 GLL G++ P PE G +G+RVP +VQ+ Sbjct: 383 GLLSGEYSKPVPESG-DGERVPEQKEVQD 410 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,616,204 Number of Sequences: 219361 Number of extensions: 1837865 Number of successful extensions: 6242 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6229 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
