Clone Name | rbasd0a10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 ggtgcgaaatatggtggaaatggcgaga 120 |||||||||| |||||||||||| |||| Sbjct: 29983 ggtgcgaaatttggtggaaatggagaga 29956
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 ggtgcgaaatatggtggaaatggcgaga 120 |||||||||| |||||||||||| |||| Sbjct: 158442 ggtgcgaaatttggtggaaatggagaga 158415
>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete sequence Length = 186135 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 acatggaaatacaatatggt 86 |||||||||||||||||||| Sbjct: 166707 acatggaaatacaatatggt 166688
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atgtatgataaatacagaat 36 |||||||||||||||||||| Sbjct: 22849581 atgtatgataaatacagaat 22849562
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 ggtgcgaaatatggtggaaatggcgaga 120 |||||||||| |||||||||||| |||| Sbjct: 17868791 ggtgcgaaatttggtggaaatggagaga 17868764
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 ggtgcgaaatatggtggaaatggcgaga 120 |||||||||| |||||||||||| |||| Sbjct: 17963108 ggtgcgaaatttggtggaaatggagaga 17963081
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atgtatgataaatacagaat 36 |||||||||||||||||||| Sbjct: 22777772 atgtatgataaatacagaat 22777753
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 atgtatgataaatacagaat 36 |||||||||||||||||||| Sbjct: 107263 atgtatgataaatacagaat 107282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,173,712 Number of Sequences: 3902068 Number of extensions: 1173712 Number of successful extensions: 77940 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77849 Number of HSP's gapped (non-prelim): 91 length of query: 203 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 181 effective length of database: 17,147,199,772 effective search space: 3103643158732 effective search space used: 3103643158732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)