ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
2gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
3emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in ... 40 2.6
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
8emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.6

>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0002A19, complete sequence
          Length = 139052

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 93    ggtgcgaaatatggtggaaatggcgaga 120
             |||||||||| |||||||||||| ||||
Sbjct: 29983 ggtgcgaaatttggtggaaatggagaga 29956



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>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06,
              complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 93     ggtgcgaaatatggtggaaatggcgaga 120
              |||||||||| |||||||||||| ||||
Sbjct: 158442 ggtgcgaaatttggtggaaatggagaga 158415



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>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete
              sequence
          Length = 186135

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     acatggaaatacaatatggt 86
              ||||||||||||||||||||
Sbjct: 166707 acatggaaatacaatatggt 166688



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 17       atgtatgataaatacagaat 36
                ||||||||||||||||||||
Sbjct: 22849581 atgtatgataaatacagaat 22849562



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 93       ggtgcgaaatatggtggaaatggcgaga 120
                |||||||||| |||||||||||| ||||
Sbjct: 17868791 ggtgcgaaatttggtggaaatggagaga 17868764



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 93       ggtgcgaaatatggtggaaatggcgaga 120
                |||||||||| |||||||||||| ||||
Sbjct: 17963108 ggtgcgaaatttggtggaaatggagaga 17963081



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 17       atgtatgataaatacagaat 36
                ||||||||||||||||||||
Sbjct: 22777772 atgtatgataaatacagaat 22777753



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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     atgtatgataaatacagaat 36
              ||||||||||||||||||||
Sbjct: 107263 atgtatgataaatacagaat 107282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,173,712
Number of Sequences: 3902068
Number of extensions: 1173712
Number of successful extensions: 77940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77849
Number of HSP's gapped (non-prelim): 91
length of query: 203
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 181
effective length of database: 17,147,199,772
effective search space: 3103643158732
effective search space used: 3103643158732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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