ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF218627.1|AF218627 Hordeum vulgare plasma membrane associate... 900 0.0
2gb|U80037.1|TAU80037 Triticum aestivum ABA induced plasma membra... 121 3e-24
3gb|AY103744.1| Zea mays PCO126369 mRNA sequence 109 1e-20
4ref|XM_475170.1| Oryza sativa (japonica cultivar-group), predic... 103 6e-19
5gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 103 6e-19
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
7dbj|AK102039.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
8ref|XM_477728.1| Oryza sativa (japonica cultivar-group), mRNA 96 1e-16
9gb|BT016404.1| Zea mays clone Contig237 mRNA sequence 96 1e-16
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
11dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
12dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
13dbj|AK063592.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
14gb|U57639.1|OSU57639 Oryza sativa hydrophobic LEA-like protein m... 96 1e-16
15ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown ... 42 1.9
16ref|XM_675255.1| Plasmodium berghei strain ANKA DEAD/DEAH box he... 42 1.9
17gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 42 1.9
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
20gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
21gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
22gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
23gb|AY753660.1| Capsella bursa-pastoris LEAFY protein (LEAFY) gen... 40 7.5
24gb|L78799.1|CCRFTSA Caulobacter vibrioides FtsA (ftsA) gene, com... 40 7.5
25gb|AC125093.4| Mus musculus BAC clone RP24-176F8 from chromosome... 40 7.5
26gb|AC124169.3| Mus musculus BAC clone RP23-151G15 from 19, compl... 40 7.5
27ref|XM_970550.1| PREDICTED: Tribolium castaneum similar to CG327... 40 7.5
28gb|AE005922.1| Caulobacter crescentus CB15 section 248 of 359 of... 40 7.5
29gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, com... 40 7.5
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
32gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 o... 40 7.5
33dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
34dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.5
35emb|AJ132503.1|MXA132503 Myxococcus xanthus taB, taC, taD, taE a... 40 7.5
36emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 40 7.5
37emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 7.5
38emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 40 7.5
39gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5 
>gb|AF218627.1|AF218627 Hordeum vulgare plasma membrane associated protein (pm19) mRNA,
           complete cds
          Length = 1000

 Score =  900 bits (454), Expect = 0.0
 Identities = 515/531 (96%), Gaps = 5/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttataaaacactagcaagnaaccccggtagtacaacatgcatgtacgtgcgtatgtaat 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 tttataaaacactagcaag-aaccccggtagtacaacatgcatgtacgtgcgtatgtaat 905

                                                                       
Query: 61  accaggtccccctnnnnnnn-gaagggaaccatgagtagtacatgcgtgccatgctcaca 119
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 904 accaggtccccctaaaaaaaagaagggaaccatgagtagtacatgcgtgccatgctcaca 845

                                                                       
Query: 120 cacataccccactgccatgccatggatcgacgatgcatacaacctactcttctgctctct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cacataccccactgccatgccatggatcgacgatgcatacaacctactcttctgctctct 785

                                                                       
Query: 180 aaccgtacgtgacacaactaacacaaatacgtactagtacagtacaacgtattatccacc 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 784 aaccgtacgtgacacaactaacacaaatacgtactagtacagtacaacttattatccacc 725

                                                                       
Query: 240 cgtcgcttgccacggccaagtcttatcctatttagacccttgcgacgccgccggtgccca 299
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 724 cgtcgcttgccacggccaagtc-tatcctatttagacccttgccacgccgccggtgccca 666

                                                                       
Query: 300 tgcccttgttgtggtggtcaccgacgccggcgccgtaagcgtgctccgccggatacccac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgcccttgttgtggtggtcaccgacgccggcgccgtaagcgtgctccgccggatacccac 606

                                                                       
Query: 360 cattgttattaccaaactggttcccgaagagcccagagtggagagcaagcacgtacagga 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 605 cattgttattaccaaactggtttccgaagagcccagagtggagagcaagcacgtacagga 546

                                                                       
Query: 420 gcctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccgg 479
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 g-ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccgg 487

                                                              
Query: 480 tacccgcccgacgtggatctccttgcacgccagcccgaaggccaaggcggt 530
           |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 tacccg-ccgacgtggatctccttgcacgccagcccgaacgccaaggcggt 437
to top
>gb|U80037.1|TAU80037 Triticum aestivum ABA induced plasma membrane protein PM-19
           (WTABAPM) mRNA, complete cds
          Length = 1094

 Score =  121 bits (61), Expect = 3e-24
 Identities = 141/165 (85%), Gaps = 2/165 (1%)
 Strand = Plus / Minus

                                                                       
Query: 371 ccaaactggttcccgaagagcccagagtggagagcaagcacgtacaggagcctgcgtgaa 430
           |||||||||||||||||||| || ||||| || || |||||||| || ||| ||||||||
Sbjct: 585 ccaaactggttcccgaagaggccggagtgcagcgcgagcacgtagagcagc-tgcgtgaa 527

                                                                       
Query: 431 ggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggtacccgcccga 490
               |  ||||| ||||||||||||||||||||||||||||| || |||||||| ||  |
Sbjct: 526 catcaaaatgatcacgaacgcctccagcaccctgaggcgccatccgcggtacccacca-a 468

                                                        
Query: 491 cgtggatctccttgcacgccagcccgaaggccaaggcggtaatcg 535
             || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 467 tatgaatctccttgcacgccagcccgaacgccaaggcggtaatcg 423



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 275 acccttgcgacgccgccggtgcccatgcccttgttgtg 312
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 accctcgcgacgccgccggtgcccatgcccttgttgtg 647
to top
>gb|AY103744.1| Zea mays PCO126369 mRNA sequence
          Length = 1385

 Score =  109 bits (55), Expect = 1e-20
 Identities = 102/115 (88%), Gaps = 2/115 (1%)
 Strand = Plus / Minus

                                                                       
Query: 407 agcacgtacaggagcctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgag 466
           |||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |  ||
Sbjct: 720 agcacgtagaggagc-tgcgtgaaggcgaggatgatgacgaaggcctccagcacgcgcag 662

                                                                  
Query: 467 gcgccacccccggtacccgcccgacgtggatctccttgcacgccagcccgaaggc 521
           |||||| || ||||  ||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 661 gcgccagccgcggtgtccg-ccgatgtggatctccttgcaggccagcccgaaggc 608
to top
>ref|XM_475170.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 522

 Score =  103 bits (52), Expect = 6e-19
 Identities = 89/100 (89%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 422 ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
           ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||
Sbjct: 396 ctgcgtgaaggcgaggatgatgacgaaggcctcgagcacgcggaggcgccacccgcggta 337

                                                   
Query: 482 cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
            ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 336 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 298
to top
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088M05, complete sequence
          Length = 153368

 Score =  103 bits (52), Expect = 6e-19
 Identities = 89/100 (89%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                         
Query: 422   ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
             ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||
Sbjct: 78768 ctgcgtgaaggcgaggatgatgacgaaggcctcgagcacgcggaggcgccacccgcggta 78827

                                                     
Query: 482   cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
              ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 78828 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 78866
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  103 bits (52), Expect = 6e-19
 Identities = 89/100 (89%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                            
Query: 422      ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
                ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||
Sbjct: 18285556 ctgcgtgaaggcgaggatgatgacgaaggcctcgagcacgcggaggcgccacccgcggta 18285615

                                                        
Query: 482      cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
                 ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 18285616 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 18285654



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 495      gatctccttgcacgccagcc 514
                ||||||||||||||||||||
Sbjct: 19337410 gatctccttgcacgccagcc 19337391
to top
>dbj|AK102039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081F22, full
           insert sequence
          Length = 859

 Score =  103 bits (52), Expect = 6e-19
 Identities = 89/100 (89%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 422 ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
           ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||
Sbjct: 483 ctgcgtgaaggcgaggatgatgacgaaggcctcgagcacgcggaggcgccacccgcggta 424

                                                   
Query: 482 cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
            ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 423 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 385
to top
>ref|XM_477728.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 597

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 422 ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
           ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| 
Sbjct: 466 ctgcgtgaaggcgaggatgatgacgaaagcctcgagcacgcggaggcgccacccgcggtg 407

                                                   
Query: 482 cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
            ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 406 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 368
to top
>gb|BT016404.1| Zea mays clone Contig237 mRNA sequence
          Length = 1259

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 102/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Minus

                                                                       
Query: 407 agcacgtacaggagcctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgag 466
           |||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |  ||
Sbjct: 740 agcacgtagaggagc-tgcgtgaaggcgaggatgatgacgaaggcctccagcacgcgcag 682

                                                                   
Query: 467 gcgccacccccggtacccgcccgacgtggatctccttgcacgcc-agcccgaaggc 521
           |||||| || ||||  ||| |||| ||||||||||||||| ||| |||||||||||
Sbjct: 681 gcgccagccgcggtgtccg-ccgatgtggatctccttgcaggccaagcccgaaggc 627
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                            
Query: 422      ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
                ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| 
Sbjct: 13554827 ctgcgtgaaggcgaggatgatgacgaaagcctcgagcacgcggaggcgccacccgcggtg 13554768

                                                        
Query: 482      cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
                 ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 13554767 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 13554729
to top
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1123E10
          Length = 134641

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                          
Query: 422    ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
              ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| 
Sbjct: 134510 ctgcgtgaaggcgaggatgatgacgaaagcctcgagcacgcggaggcgccacccgcggtg 134451

                                                      
Query: 482    cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
               ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 134450 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 134412
to top
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0084P08
          Length = 158656

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                         
Query: 422   ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
             ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| 
Sbjct: 22446 ctgcgtgaaggcgaggatgatgacgaaagcctcgagcacgcggaggcgccacccgcggtg 22387

                                                     
Query: 482   cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
              ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 22386 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 22348
to top
>dbj|AK063592.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B01, full
           insert sequence
          Length = 904

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 422 ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
           ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| 
Sbjct: 466 ctgcgtgaaggcgaggatgatgacgaaagcctcgagcacgcggaggcgccacccgcggtg 407

                                                   
Query: 482 cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
            ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 406 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 368
to top
>gb|U57639.1|OSU57639 Oryza sativa hydrophobic LEA-like protein mRNA, complete cds
          Length = 932

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                       
Query: 422 ctgcgtgaaggcgaggatgatgacgaacgcctccagcaccctgaggcgccacccccggta 481
           ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||| 
Sbjct: 467 ctgcgtgaaggcgaggatgatgacgaaagcctcgagcacgcggaggcgccacccgcggtg 408

                                                   
Query: 482 cccgcccgacgtggatctccttgcacgccagcccgaaggc 521
            ||| |||| ||||||||||||||| || || ||||||||
Sbjct: 407 gccg-ccgatgtggatctccttgcaggcgaggccgaaggc 369
to top
>ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0071K18.4), mRNA
          Length = 783

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 491 cgtggatctccttgcacgccagcccgaaggcca 523
           ||||||||||| ||||||||| |||||| ||||
Sbjct: 420 cgtggatctccctgcacgccaccccgaacgcca 388
to top
>ref|XM_675255.1| Plasmodium berghei strain ANKA DEAD/DEAH box helicase
           (PB000039.03.0) partial mRNA
          Length = 2481

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 428 gaaggcgaggatgatgacgaa 448
           |||||||||||||||||||||
Sbjct: 52  gaaggcgaggatgatgacgaa 72
to top
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
             sequence
          Length = 149758

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 491   cgtggatctccttgcacgccagcccgaaggcca 523
             ||||||||||| ||||||||| |||||| ||||
Sbjct: 42122 cgtggatctccctgcacgccaccccgaacgcca 42090
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 491      cgtggatctccttgcacgccagcccgaaggcca 523
                ||||||||||| ||||||||| |||||| ||||
Sbjct: 16618120 cgtggatctccctgcacgccaccccgaacgcca 16618152
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 491      cgtggatctccttgcacgccagcccgaaggcca 523
                ||||||||||| ||||||||| |||||| ||||
Sbjct: 16626361 cgtggatctccctgcacgccaccccgaacgcca 16626393
to top
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16
              map C481S, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    gccatggatcgacgatgcat 157
              ||||||||||||||||||||
Sbjct: 144328 gccatggatcgacgatgcat 144347
to top
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
              complete sequence
          Length = 146303

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    gatctccttgcacgccagcc 514
              ||||||||||||||||||||
Sbjct: 141485 gatctccttgcacgccagcc 141466
to top
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0035J16, complete sequence
          Length = 170233

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   gatctccttgcacgccagcc 514
             ||||||||||||||||||||
Sbjct: 40759 gatctccttgcacgccagcc 40740
to top
>gb|AY753660.1| Capsella bursa-pastoris LEAFY protein (LEAFY) gene, exons 1 through 3
            and partial cds
          Length = 2606

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgaaggcgaggatgatgacg 446
            ||||||||||||||||||||
Sbjct: 1102 tgaaggcgaggatgatgacg 1121
to top
>gb|L78799.1|CCRFTSA Caulobacter vibrioides FtsA (ftsA) gene, complete cds
          Length = 2096

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 506  acgccagcccgaaggccaaggcgg 529
            |||||||||||| |||||||||||
Sbjct: 1886 acgccagcccgatggccaaggcgg 1909
to top
>gb|AC125093.4| Mus musculus BAC clone RP24-176F8 from chromosome 19, complete sequence
          Length = 158027

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    gctcacacacataccccact 132
              ||||||||||||||||||||
Sbjct: 113098 gctcacacacataccccact 113117
to top
>gb|AC124169.3| Mus musculus BAC clone RP23-151G15 from 19, complete sequence
          Length = 201188

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  gctcacacacataccccact 132
            ||||||||||||||||||||
Sbjct: 5740 gctcacacacataccccact 5759
to top
>ref|XM_970550.1| PREDICTED: Tribolium castaneum similar to CG32796-PB, isoform B
            (LOC664554), mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 295  gcccatgcccttgttgtggtggtc 318
            |||| |||||||||||||||||||
Sbjct: 1479 gcccttgcccttgttgtggtggtc 1456
to top
>gb|AE005922.1| Caulobacter crescentus CB15 section 248 of 359 of the complete genome
          Length = 10487

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 506  acgccagcccgaaggccaaggcgg 529
            |||||||||||| |||||||||||
Sbjct: 2039 acgccagcccgatggccaaggcgg 2016
to top
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence
          Length = 168864

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   gctcacacacataccccact 132
             ||||||||||||||||||||
Sbjct: 64380 gctcacacacataccccact 64399
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 138      gccatggatcgacgatgcat 157
                ||||||||||||||||||||
Sbjct: 28185765 gccatggatcgacgatgcat 28185784
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 385      gaagagcccagagtggagag 404
                ||||||||||||||||||||
Sbjct: 29733895 gaagagcccagagtggagag 29733876
to top
>gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome
          Length = 24397

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 312   ggtggtcaccgacgccggcgccgt 335
             |||||||||||||||||| |||||
Sbjct: 18564 ggtggtcaccgacgccggtgccgt 18541
to top
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    gaagagcccagagtggagag 404
              ||||||||||||||||||||
Sbjct: 102874 gaagagcccagagtggagag 102855
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 309     tgtggtggtcaccgacgccggcgc 332
               |||||||||||||||| |||||||
Sbjct: 1929221 tgtggtggtcaccgactccggcgc 1929244
to top
>emb|AJ132503.1|MXA132503 Myxococcus xanthus taB, taC, taD, taE and taF genes
          Length = 4513

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  gcgacgccgccggtgcccat 300
            ||||||||||||||||||||
Sbjct: 3700 gcgacgccgccggtgcccat 3681
to top
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    tggtcaccgacgccggcgcc 333
              ||||||||||||||||||||
Sbjct: 154337 tggtcaccgacgccggcgcc 154318
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   atgccatggatcgacgatgc 155
             ||||||||||||||||||||
Sbjct: 82121 atgccatggatcgacgatgc 82140
to top
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    tggtcaccgacgccggcgcc 333
              ||||||||||||||||||||
Sbjct: 154337 tggtcaccgacgccggcgcc 154318
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 138      gccatggatcgacgatgcat 157
                ||||||||||||||||||||
Sbjct: 28170643 gccatggatcgacgatgcat 28170662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,691,991
Number of Sequences: 3902068
Number of extensions: 3691991
Number of successful extensions: 67901
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67544
Number of HSP's gapped (non-prelim): 341
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top