ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd0a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBP10_HUMAN (Q14694) Ubiquitin carboxyl-terminal hydrolase 10 (E... 32 1.5
2POXB_STRPN (Q54970) Pyruvate oxidase (EC 1.2.3.3) (Pyruvic oxida... 30 4.4
3AMYD_THETU (P37730) Probable starch degradation products transpo... 29 7.5
4SSG1_AVESA (P12615) 12S seed storage globulin 1 precursor [Conta... 29 9.7

>UBP10_HUMAN (Q14694) Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 10)
           (Ubiquitin-specific-processing protease 10)
           (Deubiquitinating enzyme 10)
          Length = 798

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 278 RDWLAWSMAASPSLYTGESPTLAVQLASIL**WGEAPGANGLRLHYHGAATLDSPRPGS 454
           RD L+ +  A P + T  +  L V    IL   GE    NG+ LH   +  LD  +P S
Sbjct: 261 RDTLSRTAGAQPCVGTDTTENLGVANGQILESSGEGTATNGVELHTTESIDLDPTKPES 319



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>POXB_STRPN (Q54970) Pyruvate oxidase (EC 1.2.3.3) (Pyruvic oxidase) (POX)|
          Length = 591

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 544 KPCWRASPLHATDGVAMPG 488
           K  WR SPL AT G+A+PG
Sbjct: 404 KNMWRTSPLFATMGIALPG 422



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>AMYD_THETU (P37730) Probable starch degradation products transport system|
           permease protein amyD
          Length = 292

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 237 FFFFHCFVHTIDSTGIGWLGAWL 305
           F F   F    D+T IGWLG WL
Sbjct: 127 FIFVDVFQTISDATHIGWLGGWL 149



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>SSG1_AVESA (P12615) 12S seed storage globulin 1 precursor [Contains: 12S seed|
           storage globulin 1 acidic chain; 12S seed storage
           globulin 1 basic chain]
          Length = 518

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 378 PHHXRMEASWTAKVGDSPVYSEGEAAMLQANQS 280
           P   + E S   +VG SP Y EG++   Q+ QS
Sbjct: 279 PIQSQQEQSTQYQVGQSPQYQEGQSTQYQSGQS 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,809,567
Number of Sequences: 219361
Number of extensions: 1389376
Number of successful extensions: 3378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3374
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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