Clone Name | rbasd0a03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosome 13, complete sequence Length = 192473 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 aagagaagcagaaagaagagg 141 ||||||||||||||||||||| Sbjct: 48333 aagagaagcagaaagaagagg 48353
>gb|AC132092.3| Mus musculus BAC clone RP24-470A15 from chromosome 16, complete sequence Length = 174558 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 agagaagcagaaagaagagga 142 ||||||||||||||||||||| Sbjct: 156198 agagaagcagaaagaagagga 156218
>gb|AC129186.3| Mus musculus BAC clone RP23-415I21 from chromosome 16, complete sequence Length = 209432 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 agagaagcagaaagaagagga 142 ||||||||||||||||||||| Sbjct: 10779 agagaagcagaaagaagagga 10799
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 cacatgggaagacactcaagc 180 ||||||||||||||||||||| Sbjct: 81307 cacatgggaagacactcaagc 81287
>emb|AL162596.30| Human DNA sequence from clone RP1-13P20 on chromosome 1q21.1-21.3 Contains the SPRL2A gene for small proline rich-like (epidermal differentiation complex) 2A, the LEP1 gene for late envelope protein 1, a novel gene, the MCSP gene for mitochondrial capsule selenoprotein and the IVL gene for involucrin, complete sequence Length = 116067 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tacaacaaacaagaactaga 26 |||||||||||||||||||| Sbjct: 63619 tacaacaaacaagaactaga 63638
>emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chromosome 1q31.2-31.3 Contains the ATP6V1G3 gene for H+ transporting ATPase lysosomal 13kDa V1 subunit G isoform 3, two novel genes, a prostatic binding protein (PBP) pseudogene and the 5' end of the PTPRC gene for receptor type protein tyrosine phosphatase C, complete sequence Length = 210331 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ctgaagaaacaaattcggcc 115 |||||||||||||||||||| Sbjct: 34790 ctgaagaaacaaattcggcc 34809
>gb|AC157919.5| Mus musculus chromosome 3, clone RP23-131B7, complete sequence Length = 190453 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 aagagaagcagaaagaagaggatc 144 |||||| ||||||||||||||||| Sbjct: 46708 aagagaggcagaaagaagaggatc 46731
>gb|AC154118.6| Mus musculus chromosome 19, clone RP24-340C10, complete sequence Length = 141422 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gaagcagaaagaagaggatc 144 |||||||||||||||||||| Sbjct: 14235 gaagcagaaagaagaggatc 14254
>gb|AC121099.8| Mus musculus chromosome 3, clone RP24-501F21, complete sequence Length = 157318 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 aagagaagcagaaagaagaggatc 144 |||||| ||||||||||||||||| Sbjct: 16040 aagagaggcagaaagaagaggatc 16017
>dbj|AK048074.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130033C08 product:unclassifiable, full insert sequence Length = 3730 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gaatcaccaaccttggccgt 348 |||||||||||||||||||| Sbjct: 3495 gaatcaccaaccttggccgt 3514
>emb|AL831771.5| Mouse DNA sequence from clone RP23-336F13 on chromosome X, complete sequence Length = 207974 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ttcaaagtcttaatcaattg 203 |||||||||||||||||||| Sbjct: 23439 ttcaaagtcttaatcaattg 23458
>emb|AL645963.9| Mouse DNA sequence from clone RP23-76C16 on chromosome 11, complete sequence Length = 176154 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gaatcaccaaccttggccgt 348 |||||||||||||||||||| Sbjct: 90654 gaatcaccaaccttggccgt 90635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,834,121 Number of Sequences: 3902068 Number of extensions: 3834121 Number of successful extensions: 70469 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70453 Number of HSP's gapped (non-prelim): 16 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)