ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak18o21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 pre... 51 2e-06
2GLP1_SINAL (P45854) Germin-like protein 1 precursor 49 6e-06
3AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor 49 6e-06
4GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 pre... 48 1e-05
5ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor 47 4e-05
6GLP1_BRANA (P46271) Germin-like protein 1 precursor 45 1e-04
7AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor 42 7e-04
8TRRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associa... 30 3.6
9Y588_ARCFU (O29667) Hypothetical protein AF0588 29 6.2
10T2R38_MOUSE (Q7TQA6) Putative taste receptor type 2 member 38 (T... 29 8.1

>GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 precursor|
           (AtGER3) (AtGLP2)
          Length = 211

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLDDAQ 386
           A VAF   +PGLQI  +ALFAN+LPS +VE  TFL DA+
Sbjct: 161 AFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDAE 199



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>GLP1_SINAL (P45854) Germin-like protein 1 precursor|
          Length = 211

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLDDAQ 386
           A VAF   +PGLQI  +ALFAN+LPS +VE  TFL D +
Sbjct: 161 AFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDEE 199



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>AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor|
          Length = 209

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLDDAQ 386
           A  +FS P+PGLQI D+ALF N+LP+ ++   TFLD AQ
Sbjct: 159 AFPSFSSPSPGLQILDFALFKNDLPTELIAQTTFLDAAQ 197



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>GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 precursor|
           (AtGER1) (At-GERM1) (AtGLP1)
          Length = 208

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLD 395
           A+V F+  NPGLQI D+ALFAN+LP+ +V   TFLD
Sbjct: 158 AVVTFNSANPGLQILDFALFANSLPTELVVGTTFLD 193



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>ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor|
          Length = 214

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLDDAQ 386
           A  +F   +PGLQI D+ALF N+LP+ V+   TFLD AQ
Sbjct: 164 AFASFGSASPGLQILDFALFKNDLPTEVIAQTTFLDAAQ 202



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>GLP1_BRANA (P46271) Germin-like protein 1 precursor|
          Length = 207

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLDDA 389
           ALV FS  +PGLQI D+ALFAN L + +V   TFL  A
Sbjct: 157 ALVTFSSASPGLQILDFALFANTLSTELVSATTFLPPA 194



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>AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor|
          Length = 209

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -1

Query: 502 ALVAFSGPNPGLQITDYALFANNLPSAVVETVTFLDDAQ 386
           A  +FS P+PGLQI D+ALF N+L + ++   T LD  Q
Sbjct: 159 AFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQ 197



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>TRRAP_HUMAN (Q9Y4A5) Transformation/transcription domain-associated protein|
            (350/400 kDa PCAF-associated factor) (PAF350/400)
            (STAF40) (Tra1 homolog)
          Length = 3859

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -2

Query: 306  WD*LDDYTARDGFLPPPRACYVIQCARTHPSSIANWRFVQHFLVLSKLSCPKLLLYNV 133
            W+ L +Y    G + P     V++CA      ++NW  ++  LV  ++SCPK + + V
Sbjct: 2834 WEALTEYGQSKGHINP---YLVLECAWR----VSNWTAMKEALVQVEVSCPKEMAWKV 2884



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>Y588_ARCFU (O29667) Hypothetical protein AF0588|
          Length = 481

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 228 RTHPSSIANWRFVQHFLVLSKLSCPKL 148
           R HP+ +A WR V+H+  L + + PK+
Sbjct: 331 RAHPNMLAGWRQVKHYWELLEKADPKM 357



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>T2R38_MOUSE (Q7TQA6) Putative taste receptor type 2 member 38 (T2R38) (mT2r31)|
          Length = 331

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -2

Query: 243 VIQCARTHPSSIANW---RFVQHFLVLSKLS--CPKLLLYNVLLRFFSSSFKMYHNLSPR 79
           +++ + T P  +A+W   RF+Q  LV+  LS  C  L L++   R  S+   + H  S  
Sbjct: 121 IVRFSHTFPLHVASWVSRRFLQMLLVVLLLSCICTALCLWDFFCRSHSTVTSLLHLNSTE 180

Query: 78  TNITEIVYFIFVSLLLYN 25
            ++       F S +  N
Sbjct: 181 FSLQIAKLNFFYSFIFCN 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,181,248
Number of Sequences: 219361
Number of extensions: 961326
Number of successful extensions: 2285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2284
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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