ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4p22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ890016.1| Triticum aestivum partial mRNA for serine carboxypeptidase II, (cbp2 gene), cultivar Wyuna, from endosperm tissue Length = 892 Score = 301 bits (152), Expect = 6e-79 Identities = 182/194 (93%) Strand = Plus / Minus Query: 1 gtcgtcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagta 60 ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| Sbjct: 612 gtcgtcataccaagggtaccaactggtggtagttggaagacccagagcgccgatggagta 553 Query: 61 tcttgttgctgtcaaggggactaccgcatccgtgtcgccgntgaagacccaaatccttag 120 || |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 552 cctcgttgctgtcaaggggactaccgcatccgtgtccccgctgaagacccaaatccttag 493 Query: 121 gccagctgcaatcagctccctgtanatgggaagcatggacctnggagcatnatgccantg 180 |||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||| || Sbjct: 492 gccagctgcaataagctccctgtaaatgggaagcatggacctcggagcatcatgccagtg 433 Query: 181 ggtattaatggtgt 194 |||||||||||||| Sbjct: 432 ggtattaatggtgt 419
>gb|AY290720.1| Triticum aestivum carboxypeptidase D mRNA, partial sequence Length = 372 Score = 293 bits (148), Expect = 1e-76 Identities = 181/194 (93%) Strand = Plus / Minus Query: 1 gtcgtcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagta 60 ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||| Sbjct: 201 gtcgtcataccaagggtaccaactggtggtagttggaagacccagagcaccgatggagta 142 Query: 61 tcttgttgctgtcaaggggactaccgcatccgtgtcgccgntgaagacccaaatccttag 120 ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 141 tctcgttgctgtcaaggggactaccgcgtccgtgtcgccgctgaagacccaaatccttag 82 Query: 121 gccagctgcaatcagctccctgtanatgggaagcatggacctnggagcatnatgccantg 180 |||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||| || Sbjct: 81 gccagctgcaataagctccctgtaaatgggaagcatggacctcggagcatcatgccagtg 22 Query: 181 ggtattaatggtgt 194 ||| |||||||||| Sbjct: 21 ggtgttaatggtgt 8
>emb|Y09602.1|HVCPMII H.vulgare gene encoding serine carboxypeptidase II, CP-MII Length = 6225 Score = 192 bits (97), Expect = 4e-46 Identities = 99/100 (99%) Strand = Plus / Minus Query: 1 gtcgtcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagta 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 4752 gtcgtcataccaagggtaccaactggtagtagttgcaagacccagagcgccgatggagta 4693 Query: 61 tcttgttgctgtcaaggggactaccgcatccgtgtcgccg 100 |||||||||||||||||||||||||||||||||||||||| Sbjct: 4692 tcttgttgctgtcaaggggactaccgcatccgtgtcgccg 4653 Score = 161 bits (81), Expect = 1e-36 Identities = 89/93 (95%) Strand = Plus / Minus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3616 tgaagacccaaatccttaggccagctgcaatcagctccctgtagatgggaagcatggacc 3557 Query: 162 tnggagcatnatgccantgggtattaatggtgt 194 | ||||||| |||||| |||||||||||||||| Sbjct: 3556 tcggagcatcatgccagtgggtattaatggtgt 3524
>dbj|AK107270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H11, full insert sequence Length = 1608 Score = 121 bits (61), Expect = 1e-24 Identities = 133/158 (84%) Strand = Plus / Minus Query: 5 tcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagtatctt 64 |||||||||||||||||||| |||||||| ||| || | ||| ||||||||||||| Sbjct: 1325 tcataccaagggtaccaactaacagtagttggaaggccgagagcatcgatggagtatctg 1266 Query: 65 gttgctgtcaaggggactaccgcatccgtgtcgccgntgaagacccaaatccttaggcca 124 ||||||||||||||||| || || |||||||| || |||||||||| || ||||||||| Sbjct: 1265 gttgctgtcaaggggacgacagcgtccgtgtctccactgaagacccatattcttaggcca 1206 Query: 125 gctgcaatcagctccctgtanatgggaagcatggacct 162 |||||||| ||||| ||| || ||||||| |||||| Sbjct: 1205 gctgcaataagctcatggtagataggaagcacggacct 1168
>dbj|AK064671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E03, full insert sequence Length = 1744 Score = 121 bits (61), Expect = 1e-24 Identities = 133/158 (84%) Strand = Plus / Minus Query: 5 tcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagtatctt 64 |||||||||||||||||||| |||||||| ||| || | ||| ||||||||||||| Sbjct: 1324 tcataccaagggtaccaactaacagtagttggaaggccgagagcatcgatggagtatctg 1265 Query: 65 gttgctgtcaaggggactaccgcatccgtgtcgccgntgaagacccaaatccttaggcca 124 ||||||||||||||||| || || |||||||| || |||||||||| || ||||||||| Sbjct: 1264 gttgctgtcaaggggacgacagcgtccgtgtctccactgaagacccatattcttaggcca 1205 Query: 125 gctgcaatcagctccctgtanatgggaagcatggacct 162 |||||||| ||||| ||| || ||||||| |||||| Sbjct: 1204 gctgcaataagctcatggtagataggaagcacggacct 1167
>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03, complete sequence Length = 185881 Score = 81.8 bits (41), Expect = 1e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 5 tcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagtatctt 64 |||||||||||||||||||| |||||||| ||| || | ||| ||||||||||||| Sbjct: 60924 tcataccaagggtaccaactaacagtagttggaaggccgagagcatcgatggagtatctg 60983 Query: 65 gttgctgtcaaggggactaccgcatccgtgtc 96 ||||||||||||||||| || || |||||||| Sbjct: 60984 gttgctgtcaaggggacgacagcgtccgtgtc 61015 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Plus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||||||||| || ||||||||||||||||| ||||| ||| || ||||||| ||||| Sbjct: 71709 tgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggacc 71768 Query: 162 t 162 | Sbjct: 71769 t 71769
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 1e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 5 tcataccaagggtaccaactggtagtagttgcaagacccanagcgccgatggagtatctt 64 |||||||||||||||||||| |||||||| ||| || | ||| ||||||||||||| Sbjct: 10676324 tcataccaagggtaccaactaacagtagttggaaggccgagagcatcgatggagtatctg 10676383 Query: 65 gttgctgtcaaggggactaccgcatccgtgtc 96 ||||||||||||||||| || || |||||||| Sbjct: 10676384 gttgctgtcaaggggacgacagcgtccgtgtc 10676415 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Plus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||||||||| || ||||||||||||||||| ||||| ||| || ||||||| ||||| Sbjct: 10687109 tgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggacc 10687168 Query: 162 t 162 | Sbjct: 10687169 t 10687169
>ref|XM_550207.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1750 Score = 79.8 bits (40), Expect = 4e-12 Identities = 92/110 (83%) Strand = Plus / Minus Query: 53 atggagtatcttgttgctgtcaaggggactaccgcatccgtgtcgccgntgaagacccaa 112 |||||||||||||| || || | ||||||||| | ||| | ||||||| |||| ||||| Sbjct: 1271 atggagtatcttgtcgcagtgagggggactacagaatcagcgtcgccgctgaaaacccat 1212 Query: 113 atccttaggccagctgcaatcagctccctgtanatgggaagcatggacct 162 || ||||| ||||| ||||||||||| | ||| || |||||||||||||| Sbjct: 1211 attcttagaccagccgcaatcagctcacggtaaataggaagcatggacct 1162
>dbj|AK071183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P08, full insert sequence Length = 1750 Score = 79.8 bits (40), Expect = 4e-12 Identities = 92/110 (83%) Strand = Plus / Minus Query: 53 atggagtatcttgttgctgtcaaggggactaccgcatccgtgtcgccgntgaagacccaa 112 |||||||||||||| || || | ||||||||| | ||| | ||||||| |||| ||||| Sbjct: 1271 atggagtatcttgtcgcagtgagggggactacagaatcagcgtcgccgctgaaaacccat 1212 Query: 113 atccttaggccagctgcaatcagctccctgtanatgggaagcatggacct 162 || ||||| ||||| ||||||||||| | ||| || |||||||||||||| Sbjct: 1211 attcttagaccagccgcaatcagctcacggtaaataggaagcatggacct 1162
>emb|X78876.1|HVACXPII1 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-1 Length = 1252 Score = 60.0 bits (30), Expect = 4e-06 Identities = 53/61 (86%) Strand = Plus / Minus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||||||||| || |||| ||||||||||||||| || | ||| || ||||||||||||| Sbjct: 704 tgaagacccatattcttatgccagctgcaatcagttcgcggtaaataggaagcatggacc 645 Query: 162 t 162 | Sbjct: 644 t 644
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Minus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||||| Sbjct: 3055400 tgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggacc 3055341 Query: 162 t 162 | Sbjct: 3055340 t 3055340
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Minus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||||| Sbjct: 136917 tgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggacc 136858 Query: 162 t 162 | Sbjct: 136857 t 136857
>dbj|AK107218.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C12, full insert sequence Length = 1561 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Minus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||||||||| || ||||||||||||||||| ||||| ||| || ||||||| ||||| Sbjct: 1225 tgaagacccatattcttaggccagctgcaataagctcatggtagataggaagcacggacc 1166 Query: 162 t 162 | Sbjct: 1165 t 1165
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Minus Query: 102 tgaagacccaaatccttaggccagctgcaatcagctccctgtanatgggaagcatggacc 161 |||| ||||| || ||||| ||||| ||||||||||| | ||| || ||||||||||||| Sbjct: 23440 tgaaaacccatattcttagaccagccgcaatcagctcacggtaaataggaagcatggacc 23381 Query: 162 t 162 | Sbjct: 23380 t 23380 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 749,723 Number of Sequences: 3902068 Number of extensions: 749723 Number of successful extensions: 10120 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10084 Number of HSP's gapped (non-prelim): 36 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
