ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRTC3_ARATH (O04153) Calreticulin-3 precursor 31 1.3
2MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd 31 1.3
3MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich p... 30 2.2
4MS87F_DROME (P08175) Male-specific sperm protein Mst87F 30 2.9
5FTR_RHOBA (Q7UKZ8) Formylmethanofuran--tetrahydromethanopterin f... 29 3.7

>CRTC3_ARATH (O04153) Calreticulin-3 precursor|
          Length = 424

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/18 (77%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -3

Query: 253 RYKRRN-RDHWDDYHDEL 203
           RYKR N RD+ DDYHDEL
Sbjct: 407 RYKRPNPRDYMDDYHDEL 424



to top

>MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd|
          Length = 72

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 223 PSDPCCVFCICPCSGPCHG 279
           P  PCC  C  PC GPC G
Sbjct: 12  PCGPCCGPCCGPCCGPCCG 30



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 232 PCCVFCICPCSGPCHG 279
           PCC  C  PC GPC G
Sbjct: 19  PCCGPCCGPCCGPCCG 34



to top

>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 223 PSDPCCVFCICPCSGPC 273
           P  PCC   +CPC  PC
Sbjct: 43  PKSPCCTPKVCPCPTPC 59



to top

>MS87F_DROME (P08175) Male-specific sperm protein Mst87F|
          Length = 56

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 223 PSDPCCVFCICPCSGPC 273
           P  PCC  C  PC GPC
Sbjct: 5   PCGPCCGPCCGPCCGPC 21



to top

>FTR_RHOBA (Q7UKZ8) Formylmethanofuran--tetrahydromethanopterin|
           formyltransferase (EC 2.3.1.101) (H4MPT
           formyltransferase)
          Length = 334

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 47  ALLSHXNDLRGQFNQFPSHETRNTSIIGSNYNAMFMS-NPSF 169
           A +    +L G    FP   TR+ S +GS Y A+F S N SF
Sbjct: 205 AAIDAMRELPGIITPFPGGTTRSGSKVGSKYAALFASTNDSF 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,312,579
Number of Sequences: 219361
Number of extensions: 593584
Number of successful extensions: 1414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top