>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  230 bits (116), Expect = 1e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                           
Query: 29      ctagtgattgatcatggagacccaggcgcagtatgtgcacacgatcttctgggagatgta 88
               |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 6132346 ctagtgattgatcatggagatccaggcgcaatatgtgcacacgatcttctgagagatgta 6132405

                                                                           
Query: 89      gacgtagacggcgaaggagaggctcatgagcgccacgtcctgccagtcccccttctgctt 148
               |||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||
Sbjct: 6132406 gacgtagacggcgaaggagaagctcatgagcgtgacgtccttccagtcccccttctgctt 6132465

                                                                           
Query: 149     cgggctcaggctctcccgcacgtccatccccgccttcaccgcgccgctgcgcgccctctc 208
                ||||||||||||||||||||  || |||| |||||| ||||| ||| |  | |||||||
Sbjct: 6132466 ggggctcaggctctcccgcaccgccctcccggccttcgccgcgtcgccgaacaccctctc 6132525

                       
Query: 209     ggccatgg 216
               ||||||||
Sbjct: 6132526 ggccatgg 6132533

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  230 bits (116), Expect = 1e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                           
Query: 29      ctagtgattgatcatggagacccaggcgcagtatgtgcacacgatcttctgggagatgta 88
               |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 6131559 ctagtgattgatcatggagatccaggcgcaatatgtgcacacgatcttctgagagatgta 6131618

                                                                           
Query: 89      gacgtagacggcgaaggagaggctcatgagcgccacgtcctgccagtcccccttctgctt 148
               |||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||
Sbjct: 6131619 gacgtagacggcgaaggagaagctcatgagcgtgacgtccttccagtcccccttctgctt 6131678

                                                                           
Query: 149     cgggctcaggctctcccgcacgtccatccccgccttcaccgcgccgctgcgcgccctctc 208
                ||||||||||||||||||||  || |||| |||||| ||||| ||| |  | |||||||
Sbjct: 6131679 ggggctcaggctctcccgcaccgccctcccggccttcgccgcgtcgccgaacaccctctc 6131738

                       
Query: 209     ggccatgg 216
               ||||||||
Sbjct: 6131739 ggccatgg 6131746

>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11,
              complete sequence
          Length = 174865

 Score =  230 bits (116), Expect = 1e-57
 Identities = 170/188 (90%)
 Strand = Plus / Plus

                                                                          
Query: 29     ctagtgattgatcatggagacccaggcgcagtatgtgcacacgatcttctgggagatgta 88
              |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 125822 ctagtgattgatcatggagatccaggcgcaatatgtgcacacgatcttctgagagatgta 125881

                                                                          
Query: 89     gacgtagacggcgaaggagaggctcatgagcgccacgtcctgccagtcccccttctgctt 148
              |||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||
Sbjct: 125882 gacgtagacggcgaaggagaagctcatgagcgtgacgtccttccagtcccccttctgctt 125941

                                                                          
Query: 149    cgggctcaggctctcccgcacgtccatccccgccttcaccgcgccgctgcgcgccctctc 208
               ||||||||||||||||||||  || |||| |||||| ||||| ||| |  | |||||||
Sbjct: 125942 ggggctcaggctctcccgcaccgccctcccggccttcgccgcgtcgccgaacaccctctc 126001

                      
Query: 209    ggccatgg 216
              ||||||||
Sbjct: 126002 ggccatgg 126009

>dbj|AK120090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021A09, full
           insert sequence
          Length = 597

 Score =  222 bits (112), Expect = 4e-55
 Identities = 169/188 (89%)
 Strand = Plus / Minus

                                                                       
Query: 29  ctagtgattgatcatggagacccaggcgcagtatgtgcacacgatcttctgggagatgta 88
           ||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 496 ctagtgattgatcttggagatccaggcgcaatatgtgcacacgatcttctgagagatgta 437

                                                                       
Query: 89  gacgtagacggcgaaggagaggctcatgagcgccacgtcctgccagtcccccttctgctt 148
           |||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||
Sbjct: 436 gacgtagacggcgaaggagaagctcatgagcgtgacgtccttccagtcccccttctgctt 377

                                                                       
Query: 149 cgggctcaggctctcccgcacgtccatccccgccttcaccgcgccgctgcgcgccctctc 208
            ||||||||||||||||||||  || |||| |||||| ||||| ||| |  | |||||||
Sbjct: 376 ggggctcaggctctcccgcaccgccctcccggccttcgccgcgtcgccgaacaccctctc 317

                   
Query: 209 ggccatgg 216
           ||||||||
Sbjct: 316 ggccatgg 309

>gb|AY111925.1| Zea mays CL17753_1 mRNA sequence
          Length = 508

 Score =  149 bits (75), Expect = 4e-33
 Identities = 148/174 (85%)
 Strand = Plus / Plus

                                                                       
Query: 39  atcatggagacccaggcgcagtatgtgcacacgatcttctgggagatgtagacgtagacg 98
           ||||| |||| ||| |||||||| |||||||||| |||||| |||||||| |||||||||
Sbjct: 101 atcatagagagccaagcgcagtacgtgcacacgagcttctgagagatgtacacgtagacg 160

                                                                       
Query: 99  gcgaaggagaggctcatgagcgccacgtcctgccagtcccccttctgcttcgggctcagg 158
           |||||||||| |||||||||||  ||||||| |||||     |||||||| |||||||||
Sbjct: 161 gcgaaggagaagctcatgagcgtgacgtccttccagtnnnnnttctgcttggggctcagg 220

                                                                 
Query: 159 ctctcccgcacgtccatccccgccttcaccgcgccgctgcgcgccctctcggcc 212
           ||||||||| |  ||||||| ||||||||| || ||| ||||  ||||||||||
Sbjct: 221 ctctcccgcgccgccatcccggccttcaccacgtcgccgcgcagcctctcggcc 274

>ref|XM_531344.1| PREDICTED: Pan troglodytes LOC467163 (LOC467163), mRNA
          Length = 1569

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 139  ccttctgcttcgggctcaggctctcc 164
            |||||| |||||||||||||||||||
Sbjct: 1007 ccttctccttcgggctcaggctctcc 982



 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 139 ccttctgcttcgggctcaggctctc 163
           |||||| ||||||||||||||||||
Sbjct: 983 ccttctccttcgggctcaggctctc 959



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 139 ccttctgcttcgggctcaggctct 162
           |||||| |||||||||||||||||
Sbjct: 634 ccttctccttcgggctcaggctct 611

>gb|AC079031.39| Homo sapiens 12 BAC RP11-503G7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 89059

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 139  ccttctgcttcgggctcaggctctc 163
            |||||| ||||||||||||||||||
Sbjct: 7791 ccttctccttcgggctcaggctctc 7767

>gb|AC025594.5|AC025594 Homo sapiens chromosome 7 clone RP11-309L24, complete sequence
          Length = 200197

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 125    gtcctgccagtcccccttctgcttc 149
              |||||||||||||| ||||||||||
Sbjct: 119202 gtcctgccagtccctcttctgcttc 119178

>ref|XM_502702.1| Yarrowia lipolytica CLIB122, YALI0D11506g predicted mRNA
          Length = 5691

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  ccccttctgcttcgggctca 156
            ||||||||||||||||||||
Sbjct: 5506 ccccttctgcttcgggctca 5487

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    cgccttcaccgcgccgctgc 198
              ||||||||||||||||||||
Sbjct: 732927 cgccttcaccgcgccgctgc 732946

>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 172   ccatccccgccttcaccgcgccgctgcgcgcc 203
             |||||||| ||| |||||| ||||||||||||
Sbjct: 81517 ccatcccctcctccaccgctccgctgcgcgcc 81548

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 180     gccttcaccgcgccgctgcgcgcc 203
               ||||||||||||| ||||||||||
Sbjct: 3305232 gccttcaccgcgctgctgcgcgcc 3305209

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     ccatccccgccttcaccgcg 191
               ||||||||||||||||||||
Sbjct: 3559096 ccatccccgccttcaccgcg 3559115

>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ccccttctgcttcgggctca 156
               ||||||||||||||||||||
Sbjct: 1433801 ccccttctgcttcgggctca 1433820

>dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VAR region, complete cds
          Length = 73934

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 172   ccatccccgccttcaccgcgccgctgcgcgcc 203
             |||||||| ||| |||||| ||||||||||||
Sbjct: 41949 ccatcccctcctccaccgctccgctgcgcgcc 41980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,377,929
Number of Sequences: 3902068
Number of extensions: 1377929
Number of successful extensions: 103607
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102962
Number of HSP's gapped (non-prelim): 645
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)