Clone Name | rbaak4p10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 944 bits (476), Expect = 0.0 Identities = 511/520 (98%), Gaps = 2/520 (0%) Strand = Plus / Plus Query: 1 ttttaaaac-tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgc 59 ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 76965 ttttaaaacatatacgtaaaacacaatctactaa-attaattctttgatctcaatttcgc 77023 Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 77024 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaatcctc 77083 Query: 120 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 179 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 77084 tcaattcctcggcaatcgcgccaaaaactcgagttccttttggattgcctttttgatcaa 77143 Query: 180 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 77144 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaactctt 77203 Query: 240 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77204 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 77263 Query: 300 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77264 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 77323 Query: 360 cagctcctatgactcgaatacacatcaattttcgagctccaatattgtctgctacattta 419 ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| Sbjct: 77324 cagctcctatgactcgaatacacatcaattttcgagctccactattatcggctacattta 77383 Query: 420 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77384 aaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaagg 77443 Query: 480 atgaaagaaatattgtctttccagaaagaaaaaccgggca 519 |||||||||||||||||||||||||||||||||||||||| Sbjct: 77444 atgaaagaaatattgtctttccagaaagaaaaaccgggca 77483 Score = 139 bits (70), Expect = 1e-29 Identities = 70/70 (100%) Strand = Plus / Plus Query: 529 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaataaattgacttcgtatgggca 77555 Query: 589 ttttactggc 598 |||||||||| Sbjct: 77556 ttttactggc 77565
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 780 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 723 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 722 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 663 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 662 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 603 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 602 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 543 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 542 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 483 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 482 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 423 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 422 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 363 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 303 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 302 tattgtctttccagaaagaagaacc 278 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 193
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1522 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1465 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1464 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1405 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1404 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1345 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1344 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1285 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1284 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 1225 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1224 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 1165 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1164 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 1105 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1104 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 1045 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 1044 tattgtctttccagaaagaagaacc 1020 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 935
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1522 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1465 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1464 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1405 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1404 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1345 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1344 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1285 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1284 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 1225 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1224 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 1165 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1164 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 1105 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1104 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 1045 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 1044 tattgtctttccagaaagaagaacc 1020 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 981 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 935
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 77203 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 77260 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 77261 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 77320 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 77321 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 77380 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 77381 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 77440 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 77441 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 77500 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 77501 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 77560 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 77561 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 77620 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77621 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 77680 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 77681 tattgtctttccagaaagaagaacc 77705 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 77789
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 77203 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 77260 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 77261 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 77320 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 77321 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 77380 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 77381 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 77440 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 77441 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 77500 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 77501 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 77560 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 77561 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 77620 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77621 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 77680 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 77681 tattgtctttccagaaagaagaacc 77705 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 77743 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 77789
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 77144 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 77201 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 77202 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 77261 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 77262 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 77321 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 77322 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 77381 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 77382 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 77441 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 77442 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 77501 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 77502 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 77561 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77562 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 77621 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 77622 tattgtctttccagaaagaagaacc 77646 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 77733
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 53214 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 53271 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 53272 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 53331 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 53332 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 53391 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 53392 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 53451 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 53452 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 53511 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 53512 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 53571 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 53572 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 53631 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53632 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 53691 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 53692 tattgtctttccagaaagaagaacc 53716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 53754 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 53800
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 126042 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 126099 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 126100 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 126159 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 126160 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 126219 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 126220 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 126279 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 126280 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 126339 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 126340 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 126399 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 126400 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 126459 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126460 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 126519 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 126520 tattgtctttccagaaagaagaacc 126544 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 126582 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 126628
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 77190 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 77247 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 77248 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 77307 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 77308 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 77367 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 77368 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 77427 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 77428 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 77487 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 77488 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 77547 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 77548 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 77607 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77608 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 77667 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 77668 tattgtctttccagaaagaagaacc 77692 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 77730 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 77776
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 73590 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 73533 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 73532 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 73473 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 73472 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 73413 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 73412 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 73353 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 73352 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 73293 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 73292 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73233 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 73232 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 73173 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73172 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 73113 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 73112 tattgtctttccagaaagaagaacc 73088 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 73009 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 72963 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatggg 586 ||||| ||||| |||| |||||||||||||||||| Sbjct: 73049 tatatttctaaccgaagaaattgacttcgtatggg 73015
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 75391 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 75448 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 75449 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 75508 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 75509 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 75568 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 75569 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 75628 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 75629 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 75688 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 75689 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 75748 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 75749 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 75808 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75809 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 75868 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 75869 tattgtctttccagaaagaagaacc 75893 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 75932 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 75978
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 9455 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 9512 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 9513 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 9572 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 9573 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 9632 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 9633 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 9692 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 9693 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 9752 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9753 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 9812 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 9813 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 9872 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9873 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 9932 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 9933 tattgtctttccagaaagaagaacc 9957 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 9996 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 10042
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 9192517 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 9192460 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 9192459 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 9192400 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 9192399 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 9192340 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 9192339 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 9192280 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 9192279 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 9192220 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9192219 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 9192160 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 9192159 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 9192100 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192099 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 9192040 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 9192039 tattgtctttccagaaagaagaacc 9192015 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 9115564 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 9115507 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 9115506 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 9115447 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 9115446 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 9115387 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 9115386 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 9115327 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 9115326 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 9115267 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9115266 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 9115207 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 9115206 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 9115147 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115146 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 9115087 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 9115086 tattgtctttccagaaagaagaacc 9115062 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 246 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 296 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 237 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 292 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 293 tggggcaatgcgtctttgattaca 316 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 9191936 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 9191890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 9114983 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 9114937 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatggg 586 ||||| ||||| |||| |||||||||||||||||| Sbjct: 9191976 tatatttctaaccgaagaaattgacttcgtatggg 9191942 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatggg 586 ||||| ||||| |||| |||||||||||||||||| Sbjct: 9115023 tatatttctaaccgaagaaattgacttcgtatggg 9114989
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 10368999 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 10369056 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 10369057 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 10369116 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 10369117 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 10369176 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 10369177 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 10369236 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 10369237 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 10369296 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 10369297 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 10369356 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 10369357 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 10369416 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369417 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 10369476 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 10369477 tattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 284 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 285 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 344 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 345 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 389 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 10369540 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 10369586
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 9259859 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 9259802 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 9259801 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 9259742 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 9259741 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 9259682 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 9259681 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 9259622 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 9259621 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 9259562 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 9259561 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 9259502 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 9259501 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 9259442 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259441 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 9259382 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 9259381 tattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 169 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 228 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 288 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 289 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 338 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 17206277 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 17206278 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 17206336 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206337 actgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 9259318 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 9259272
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 12755755 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 12755812 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 12755813 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 12755872 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 12755873 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 12755932 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 12755933 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 12755992 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 12755993 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 12756052 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 12756053 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 12756112 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 12756113 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 12756172 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756173 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 12756232 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 12756233 tattgtctttccagaaagaagaacc 12756257 Score = 749 bits (378), Expect = 0.0 Identities = 474/505 (93%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 19545826 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 19545769 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct: 19545768 ttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctcaattcctc 19545709 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | | |||| ||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 19545708 gacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 19545649 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 19545648 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 19545589 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 19545588 tacaattacagctcgaattacttgagatctttctagaggcatttggggcactgcgtcttt 19545529 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 19545528 gattacagcaacaataacatcaccaatacgagcatattgctgattactagcagctcctat 19545469 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 19545468 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 19545409 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545408 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 19545349 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 19545348 tattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 184 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 243 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 364 tcctatgactcgaatacacat 384 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 89 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 148 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 149 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 208 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 209 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 268 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 269 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 328 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 329 tcaccaatacgagcatatcgctgattaccagcagctccta 368 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 111 bits (56), Expect = 3e-21 Identities = 88/98 (89%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 378 tacacatcaattttcgagctccaatattgtctgctac---atttaaaagggtctgaggtt 434 |||||||||||||| | ||||||| || |||||||| |||||||||||| ||||||| Sbjct: 3109328 tacacatcaatttttggactccaatgttatctgctactacatttaaaagggtttgaggtt 3109387 Query: 435 gaatcatattattttgatttcaatttgttatttcaatg 472 |||||||||||||||||| ||||||||||||||||||| Sbjct: 3109388 gaatcatattattttgatgtcaatttgttatttcaatg 3109425 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 19545285 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 19545239 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 12756295 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 12756341 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 tttcaatttgttatttcaatgcaaa 476 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 71072 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 71015 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 71014 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 70955 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 70954 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 70895 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 70894 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 70835 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 70834 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 70775 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 70774 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 70715 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 70714 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 70655 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70654 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 70595 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 70594 tattgtctttccagaaagaagaacc 70570 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 70531 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 70485
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1530 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1473 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1472 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1413 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1412 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1353 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1352 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1293 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1292 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 1233 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1232 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 1173 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1172 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 1113 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 1053 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 1052 tattgtctttccagaaagaagaacc 1028 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 990 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 944
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1745 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1688 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1687 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1628 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1627 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1568 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1567 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1508 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1507 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 1448 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1447 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 1388 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1387 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 1328 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1327 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 1268 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 1267 tattgtctttccagaaagaagaacc 1243 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 1205 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 1159
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 797 bits (402), Expect = 0.0 Identities = 480/505 (95%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 10375038 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 10375095 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 10375096 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 10375155 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 10375156 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 10375215 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 10375216 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 10375275 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 10375276 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 10375335 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 10375336 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 10375395 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 10375396 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 10375455 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375456 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 10375515 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 10375516 tattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 284 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 285 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 344 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 345 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 389 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 10375579 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 10375625
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 5656653 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 5656710 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 5656711 ttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctcaattcctc 5656770 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 5656771 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 5656830 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 5656831 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 5656890 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 5656891 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 5656950 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 5656951 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 5657010 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 5657011 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 5657070 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657071 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 5657130 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 5657131 tattgtctttccagaaagaagaacc 5657155 Score = 385 bits (194), Expect = e-103 Identities = 254/273 (93%), Gaps = 2/273 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 20514165 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 20514222 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 20514223 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 20514282 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 20514283 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 20514342 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 20514343 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 20514402 Query: 250 tacaattacagctcgaattacttcggatctttc 282 ||||||||||||||||||||||||||||||||| Sbjct: 20514403 tacaattacagctcgaattacttcggatctttc 20514435 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 5657194 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 5657240 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 96 ctattttggtaaaattcaattctctcaattc 126 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 33496969 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 33497026 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 33497027 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 33497086 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 33497087 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 33497146 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 33497147 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 33497206 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 33497207 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 33497266 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 33497267 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 33497326 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 33497327 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 33497386 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497387 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 33497446 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 33497447 tattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 158 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 217 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 218 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 277 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 278 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 337 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 338 cgagcatat 346 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 69.9 bits (35), Expect = 9e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 260 gctc 263 |||| Sbjct: 39109207 gctc 39109204 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 33497509 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 33497555 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaatt 41 |||||||||||||||||||| Sbjct: 32571860 acaatctactaatattaatt 32571879
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 42166 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 42223 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 42224 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 42283 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 42284 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 42343 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 42344 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 42403 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 42404 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 42463 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 42464 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 42523 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 42524 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 42583 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42584 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 42643 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 42644 tattgtctttccagaaagaagaacc 42668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 42706 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 42752
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 779 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 722 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 721 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 662 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 661 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 602 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 601 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 542 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 541 tacaattacagctcgaattacttcggatctttctagaggcatttggagcactgcgtcttt 482 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 481 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 422 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 421 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 362 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 302 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 301 tattgtctttccagaaagaagaacc 277 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 193
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 5656646 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 5656703 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 5656704 ttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctcaattcctc 5656763 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 5656764 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 5656823 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 5656824 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 5656883 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 5656884 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 5656943 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 5656944 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 5657003 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 5657004 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 5657063 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657064 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 5657123 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 5657124 tattgtctttccagaaagaagaacc 5657148 Score = 385 bits (194), Expect = e-103 Identities = 254/273 (93%), Gaps = 2/273 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 20440379 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 20440436 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 20440437 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 20440496 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 20440497 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 20440556 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 20440557 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 20440616 Query: 250 tacaattacagctcgaattacttcggatctttc 282 ||||||||||||||||||||||||||||||||| Sbjct: 20440617 tacaattacagctcgaattacttcggatctttc 20440649 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 5657187 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 5657233 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 96 ctattttggtaaaattcaattctctcaattc 126 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 11176 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 11233 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 11234 ttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctcaattcctc 11293 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 11294 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 11353 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 11354 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 11413 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 11414 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 11473 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 11474 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 11533 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 11534 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 11593 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11594 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 11653 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 11654 tattgtctttccagaaagaagaacc 11678 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 11717 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 11763
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 789 bits (398), Expect = 0.0 Identities = 479/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 77146 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 77203 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 77204 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 77263 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 77264 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 77323 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 77324 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 77383 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 77384 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 77443 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 77444 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 77503 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 77504 gactcgaatacacatcaattttcgagctccgctgttatctgctacatttaaaagggtctg 77563 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77564 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 77623 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 77624 tattgtctttccagaaagaagaacc 77648 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 77687 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 77733
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1520 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1463 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1462 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1403 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1402 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1343 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1342 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1283 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1282 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 1223 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1222 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 1163 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| Sbjct: 1162 gactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtctg 1103 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1102 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 1043 Query: 490 tattgtctttccagaaagaaaaacc 514 ||| |||||||||||||||| |||| Sbjct: 1042 tatcgtctttccagaaagaagaacc 1018 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| || | |||||||||||||||||||||||| ||||| Sbjct: 980 tatatttctaaccggagaaattgacttcgtatgggcattttgctggc 934
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1520 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1463 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1462 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1403 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1402 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1343 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1342 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1283 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1282 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 1223 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1222 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 1163 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| Sbjct: 1162 gactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtctg 1103 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1102 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 1043 Query: 490 tattgtctttccagaaagaaaaacc 514 ||| |||||||||||||||| |||| Sbjct: 1042 tatcgtctttccagaaagaagaacc 1018 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| || | |||||||||||||||||||||||| ||||| Sbjct: 980 tatatttctaaccggagaaattgacttcgtatgggcattttgctggc 934
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 27922686 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 27922743 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27922744 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 27922803 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 27922804 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 27922863 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 27922864 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 27922923 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 27922924 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 27922983 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 27922984 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 27923043 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| Sbjct: 27923044 gactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtctg 27923103 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923104 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 27923163 Query: 490 tattgtctttccagaaagaaaaacc 514 ||| |||||||||||||||| |||| Sbjct: 27923164 tatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 92 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 151 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 152 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 211 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 212 attataccgtcttcgcatttgaa 234 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| || | |||||||||||||||||||||||| ||||| Sbjct: 27923226 tatatttctaaccggagaaattgacttcgtatgggcattttgctggc 27923272
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 23181899 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 23181842 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 23181841 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 23181782 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||| ||||||||| ||||||||||||| || |||||||||||||| |||||||| Sbjct: 23181781 ggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatgataaccgc 23181722 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 23181721 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 23181662 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 23181661 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 23181602 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 23181601 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 23181542 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 23181541 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 23181482 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181481 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 23181422 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 23181421 tattgtctttccagaaagaagaacc 23181397 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 23181359 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 23181313
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 86044 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 86101 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 86102 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 86161 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 86162 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 86221 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 86222 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 86281 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 86282 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 86341 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 86342 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 86401 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| Sbjct: 86402 gactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtctg 86461 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86462 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 86521 Query: 490 tattgtctttccagaaagaaaaacc 514 ||| |||||||||||||||| |||| Sbjct: 86522 tatcgtctttccagaaagaagaacc 86546 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| || | |||||||||||||||||||||||| ||||| Sbjct: 86584 tatatttctaaccggagaaattgacttcgtatgggcattttgctggc 86630
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 12020 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 12077 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 12078 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 12137 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 12138 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 12197 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 12198 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 12257 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 12258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 12317 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 12318 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 12377 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| Sbjct: 12378 gactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaagggtctg 12437 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12438 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 12497 Query: 490 tattgtctttccagaaagaaaaacc 514 ||| |||||||||||||||| |||| Sbjct: 12498 tatcgtctttccagaaagaagaacc 12522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| || | |||||||||||||||||||||||| ||||| Sbjct: 12560 tatatttctaaccggagaaattgacttcgtatgggcattttgctggc 12606
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 132547 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 132490 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 132489 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 132430 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||| ||||||||| ||||||||||||| || |||||||||||||| |||||||| Sbjct: 132429 ggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatgataaccgc 132370 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 132369 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 132310 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 132309 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 132250 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132249 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 132190 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 132189 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 132130 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132129 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 132070 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 132069 tattgtctttccagaaagaagaacc 132045 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 132007 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 131961
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 781 bits (394), Expect = 0.0 Identities = 478/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 16661 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 16604 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 16603 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 16544 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||| ||||||||| ||||||||||||| || |||||||||||||| |||||||| Sbjct: 16543 ggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatgataaccgc 16484 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 16483 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 16424 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 16423 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 16364 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 16363 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 16304 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 16303 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 16244 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16243 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 16184 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 16183 tattgtctttccagaaagaagaacc 16159 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 16121 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 16075
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 780 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 723 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 722 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 663 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 662 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 603 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 602 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 543 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 542 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtcttt 483 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 482 gattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctcctat 423 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 422 gactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtctg 363 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 362 aggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaaa 303 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 302 tattgtctttccagaaagaagaacc 278 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcatttt 592 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 239 tatatttctaaccgaagaaattgacttcgtatgggcatttt 199
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1508 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1451 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1450 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1391 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1390 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1331 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1330 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1271 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 1270 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtcttt 1211 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 1210 gattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctcctat 1151 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1150 gactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtctg 1091 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1090 aggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaaa 1031 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 1030 tattgtctttccagaaagaagaacc 1006 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcatttt 592 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 967 tatatttctaaccgaagaaattgacttcgtatgggcatttt 927
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1723 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1666 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1665 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1606 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1605 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 1546 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 1545 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 1486 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 1485 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtcttt 1426 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 1425 gattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctcctat 1366 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 1365 gactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtctg 1306 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 aggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaaa 1246 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 1245 tattgtctttccagaaagaagaacc 1221 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcatttt 592 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 1182 tatatttctaaccgaagaaattgacttcgtatgggcatttt 1142
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| | ||||||||||||||| || |||||||||||| || ||| |||||||||| Sbjct: 81 tatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtctactagtat 138 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| || Sbjct: 139 ttataatacttcaggagctaatgaaactattttagtataattcaattctcttaattcttc 198 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 199 ggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactgc 258 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||| Sbjct: 259 tgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtacg 318 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 319 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 378 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 379 gattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcctat 438 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 439 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 498 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 499 aggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggatgaaagaaa 558 Query: 490 tattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||| Sbjct: 559 tattgtctttccagaaagaaaaacc 583 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Plus Query: 541 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 610 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggc 667
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 11896680 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 11896623 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 11896622 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 11896563 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 11896562 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 11896503 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 11896502 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 11896443 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 11896442 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtcttt 11896383 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 11896382 gattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctcctat 11896323 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 11896322 gactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtctg 11896263 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 11896262 aggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaaa 11896203 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 11896202 tattgtctttccagaaagaagaacc 11896178 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 20862633 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 20862692 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 20862693 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 20862751 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862752 attgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 434 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 494 gtctttccagaaagaaaaacc 514 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 14455950 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 14455904 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcatttt 592 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 11896139 tatatttctaaccgaagaaattgacttcgtatgggcatttt 11896099
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 78170 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 78113 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 78112 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 78053 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 78052 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 77993 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 77992 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 77933 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 77932 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtcttt 77873 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 77872 gattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctcctat 77813 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 77812 gactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtctg 77753 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 77752 aggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaaa 77693 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 77692 tattgtctttccagaaagaagaacc 77668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcatttt 592 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 77629 tatatttctaaccgaagaaattgacttcgtatgggcatttt 77589
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 1160 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 1103 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1102 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 1043 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1042 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 983 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 982 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 923 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 922 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactacgtcttt 863 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 862 gattacagcaacaataacatcaccaatacgagcatatcgctgactactagcagctcctat 803 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 802 gactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaagggtctg 743 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 742 aggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggatgaaagaaa 683 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 682 tattgtctttccagaaagaagaacc 658 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcatttt 592 ||||| ||||| |||| |||||||||||||||||||||||| Sbjct: 619 tatatttctaaccgaagaaattgacttcgtatgggcatttt 579
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 765 bits (386), Expect = 0.0 Identities = 476/505 (94%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| | ||||||||||||||| || |||||||||||| || ||| |||||||||| Sbjct: 79638 tatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtctactagtat 79695 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| || Sbjct: 79696 ttataatacttcaggagctaatgaaactattttagtataattcaattctcttaattcttc 79755 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 79756 ggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactgc 79815 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||| Sbjct: 79816 tgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtacg 79875 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 79876 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 79935 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 79936 gattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcctat 79995 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 79996 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 80055 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 80056 aggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggatgaaagaaa 80115 Query: 490 tattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||| Sbjct: 80116 tattgtctttccagaaagaaaaacc 80140 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Plus Query: 541 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 80167 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggc 80224
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 749 bits (378), Expect = 0.0 Identities = 474/505 (93%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 146538 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 146481 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct: 146480 ttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctcaattcctc 146421 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | | |||| ||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 146420 gacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 146361 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 146360 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 146301 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 146300 tacaattacagctcgaattacttgagatctttctagaggcatttggggcactgcgtcttt 146241 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 146240 gattacagcaacaataacatcaccaatacgagcatattgctgattactagcagctcctat 146181 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 146180 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 146121 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146120 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 146061 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 146060 tattgtctttccagaaagaagaacc 146036 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 145997 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 145951
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 749 bits (378), Expect = 0.0 Identities = 474/505 (93%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 5725 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 5668 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct: 5667 ttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctcaattcctc 5608 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | | |||| ||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 5607 gacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 5548 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 5547 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 5488 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 5487 tacaattacagctcgaattacttgagatctttctagaggcatttggggcactgcgtcttt 5428 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 5427 gattacagcaacaataacatcaccaatacgagcatattgctgattactagcagctcctat 5368 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 5367 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 5308 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5307 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 5248 Query: 490 tattgtctttccagaaagaaaaacc 514 |||||||||||||||||||| |||| Sbjct: 5247 tattgtctttccagaaagaagaacc 5223 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 5184 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 5138
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 749 bits (378), Expect = 0.0 Identities = 474/505 (93%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| | ||| ||||||||||| || |||||||||||| || ||| |||||||||| Sbjct: 78980 tatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagtat 79037 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 79038 ttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattcttc 79097 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 79098 ggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactgc 79157 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||| Sbjct: 79158 tgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtacg 79217 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 79218 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 79277 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 79278 gattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcctat 79337 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 79338 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 79397 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 79398 aggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaagaaa 79457 Query: 490 tattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||| Sbjct: 79458 tattgtctttccagaaagaaaaacc 79482 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Plus Query: 541 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 79509 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggc 79566
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 749 bits (378), Expect = 0.0 Identities = 474/505 (93%), Gaps = 2/505 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| | ||| ||||||||||| || |||||||||||| || ||| |||||||||| Sbjct: 689 tatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagtat 632 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 631 ttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattcttc 572 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 571 ggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactgc 512 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||| Sbjct: 511 tgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtacg 452 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 451 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 392 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 391 gattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcctat 332 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 331 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 272 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 271 aggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaagaaa 212 Query: 490 tattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||| Sbjct: 211 tattgtctttccagaaagaaaaacc 187 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Minus Query: 541 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 160 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggc 103
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 749 bits (378), Expect = 0.0 Identities = 474/505 (93%), Gaps = 2/505 (0%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| | ||| ||||||||||| || |||||||||||| || ||| |||||||||| Sbjct: 78996 tatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagtat 79053 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 79054 ttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattcttc 79113 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| || Sbjct: 79114 ggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataactgc 79173 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||| Sbjct: 79174 tgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgtacg 79233 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 79234 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtcttt 79293 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 79294 gattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcctat 79353 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 79354 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 79413 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaa 489 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 79414 aggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaagaaa 79473 Query: 490 tattgtctttccagaaagaaaaacc 514 ||||||||||||||||||||||||| Sbjct: 79474 tattgtctttccagaaagaaaaacc 79498 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Plus Query: 541 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 79525 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggc 79582
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 611 bits (308), Expect = e-171 Identities = 356/372 (95%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 313 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 312 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 253 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 193 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 192 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 133 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| Sbjct: 72 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctg 13 Query: 430 aggttgaatcat 441 |||||||||||| Sbjct: 12 aggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 531 bits (268), Expect = e-148 Identities = 295/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 383 atcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 14556 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14557 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 14616 Query: 503 gaaa 506 |||| Sbjct: 14617 gaaa 14620 Score = 222 bits (112), Expect = 1e-54 Identities = 176/195 (90%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 13947 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 14004 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 14005 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattccta 14064 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| |||||||| Sbjct: 14065 ggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccgc 14123 Query: 190 agcattgtcatcata 204 |||||||| ||||| Sbjct: 14124 tgcattgtcgtcata 14138 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| Sbjct: 14667 tatatttctaaccgaagaaattgacttcatatgggcattttgctggc 14713
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 531 bits (268), Expect = e-148 Identities = 295/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 383 atcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24638370 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24638371 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24638430 Query: 503 gaaa 506 |||| Sbjct: 24638431 gaaa 24638434 Score = 454 bits (229), Expect = e-124 Identities = 268/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32000678 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000679 ttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 222 bits (112), Expect = 1e-54 Identities = 176/195 (90%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 24637761 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 24637818 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 24637819 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattccta 24637878 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| |||||||| Sbjct: 24637879 ggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccgc 24637937 Query: 190 agcattgtcatcata 204 |||||||| ||||| Sbjct: 24637938 tgcattgtcgtcata 24637952 Score = 163 bits (82), Expect = 8e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27557409 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27557468 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27557469 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27557527 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557528 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| Sbjct: 24638481 tatatttctaaccgaagaaattgacttcatatgggcattttgctggc 24638527
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 531 bits (268), Expect = e-148 Identities = 295/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 383 atcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 70416 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 70417 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 70476 Query: 503 gaaa 506 |||| Sbjct: 70477 gaaa 70480 Score = 222 bits (112), Expect = 1e-54 Identities = 176/195 (90%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 69807 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 69864 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 69865 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattccta 69924 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| |||||||| Sbjct: 69925 ggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccgc 69983 Query: 190 agcattgtcatcata 204 |||||||| ||||| Sbjct: 69984 tgcattgtcgtcata 69998 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| Sbjct: 70527 tatatttctaaccgaagaaattgacttcatatgggcattttgctggc 70573
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 531 bits (268), Expect = e-148 Identities = 295/304 (97%) Strand = Plus / Plus Query: 203 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 262 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 263 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 322 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 323 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 382 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 383 atcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatcata 442 |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtctgaggttgaatcata 24555839 Query: 443 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcca 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24555840 ttattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcca 24555899 Query: 503 gaaa 506 |||| Sbjct: 24555900 gaaa 24555903 Score = 454 bits (229), Expect = e-124 Identities = 268/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 32091190 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091191 ttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 222 bits (112), Expect = 1e-54 Identities = 176/195 (90%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 24555230 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 24555287 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 24555288 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattccta 24555347 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || ||||||| |||||| |||||||| Sbjct: 24555348 ggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatgataaccgc 24555406 Query: 190 agcattgtcatcata 204 |||||||| ||||| Sbjct: 24555407 tgcattgtcgtcata 24555421 Score = 163 bits (82), Expect = 8e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27648732 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27648791 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27648792 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27648850 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648851 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| ||||||||||| |||||||||||| ||||| Sbjct: 24555950 tatatttctaaccgaagaaattgacttcatatgggcattttgctggc 24555996
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 454 bits (229), Expect = e-124 Identities = 268/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 92630 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 92631 ttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 454 bits (229), Expect = e-124 Identities = 268/281 (95%) Strand = Plus / Plus Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtctgagg 1803 Query: 433 ttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||| |||||||||||||||||| Sbjct: 1804 ttgaatcatattattttgattttaatttgttatttcaatgc 1844
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 394 bits (199), Expect = e-106 Identities = 324/365 (88%), Gaps = 3/365 (0%) Strand = Plus / Minus Query: 77 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 136 |||||||||||||||||||||||||| ||||||||||| | |||||||||| || ||| Sbjct: 362 acttcaggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgatc 303 Query: 137 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 196 || ||||||||||||||||||||||| || |||| ||||||||| | ||| ||||||||| Sbjct: 302 gcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcattg 243 Query: 197 tcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaatt 256 |||||||| || ||||| ||||||| ||| | ||||| |||||||||||||||||||||| Sbjct: 242 tcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaatt 183 Query: 257 acagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattaca 316 ||||||| ||||||||| ||||||||||||||||| | ||| | ||| |||||||||||| Sbjct: 182 acagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattaca 123 Query: 317 gcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcga 376 ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| Sbjct: 122 gcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcga 66 Query: 377 atacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttga 436 |||||||| |||||||||||||| | || || |||||||| |||||||||||||||||| Sbjct: 65 atacacattaattttcgagctccgctgttatccgctacattcaaaagggtctgaggttga 6 Query: 437 atcat 441 ||||| Sbjct: 5 atcat 1
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 385 bits (194), Expect = e-103 Identities = 254/273 (93%), Gaps = 2/273 (0%) Strand = Plus / Minus Query: 10 tatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagtat 69 ||||||| ||||||||||||||||| || || ||||||||| || | | |||||||||| Sbjct: 79068 tatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtctactagtat 79011 Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 79010 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 78951 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 78950 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 78891 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 78890 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 78831 Query: 250 tacaattacagctcgaattacttcggatctttc 282 ||||||||||||||||||||||||||||||||| Sbjct: 78830 tacaattacagctcgaattacttcggatctttc 78798
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 379 bits (191), Expect = e-102 Identities = 325/369 (88%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||| || |||||||||||||||||||| ||||||||||| | |||||||||| || Sbjct: 366 taatacctcgggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagc 307 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 |||||| ||||||| |||||||||||||||||| |||| ||||||||| | |||||| || Sbjct: 306 aatcgccccaaaaattcgagttccttttgggtttccttcttgatcaatgacaaccgctgc 247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||| Sbjct: 186 aattacagctctaattacttctgatctttctagaggcatattgggcactgcttctttgat 127 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 ||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggtgattac---cagcccctatgat 70 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 ||||||||||||||||| ||||||||| | || ||||||||||| |||||||| ||||| Sbjct: 69 tcgaatacacatcaattctcgagctccgctgttatctgctacattcaaaagggtttgagg 10 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 184 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 243 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 364 tcctatgactcgaatacacat 384 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 89 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 148 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 149 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 208 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 209 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 268 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 269 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 328 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 329 tcaccaatacgagcatatcgctgattaccagcagctccta 368 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 111 bits (56), Expect = 3e-21 Identities = 88/98 (89%), Gaps = 3/98 (3%) Strand = Plus / Plus Query: 378 tacacatcaattttcgagctccaatattgtctgctac---atttaaaagggtctgaggtt 434 |||||||||||||| | ||||||| || |||||||| |||||||||||| ||||||| Sbjct: 96572 tacacatcaatttttggactccaatgttatctgctactacatttaaaagggtttgaggtt 96631 Query: 435 gaatcatattattttgatttcaatttgttatttcaatg 472 |||||||||||||||||| ||||||||||||||||||| Sbjct: 96632 gaatcatattattttgatgtcaatttgttatttcaatg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 184 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 243 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 364 tcctatgactcgaatacacat 384 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 341 bits (172), Expect = 2e-90 Identities = 336/390 (86%), Gaps = 3/390 (0%) Strand = Plus / Plus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 119 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | || Sbjct: 81909 ctactagtatttataagacttcaggggctaatgagactattttagtgaaatttaactttc 81968 Query: 120 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 179 |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 81969 tcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatcaa 82028 Query: 180 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 239 | | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| ||||| Sbjct: 82029 tgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttctt 82088 Query: 240 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 299 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct: 82089 tacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggca 82148 Query: 300 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 359 ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82149 ctgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac--- 82205 Query: 360 cagctcctatgactcgaatacacatcaattttcgagctccaatattgtctgctacattta 419 ||| ||||||| |||||| |||||||||| |||||| || | ||||| |||||||| | Sbjct: 82206 tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattca 82265 Query: 420 aaagggtctgaggttgaatcatattatttt 449 || ||||||||||||||||||||| ||||| Sbjct: 82266 aatgggtctgaggttgaatcatatcatttt 82295
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 315 bits (159), Expect = 9e-83 Identities = 343/401 (85%), Gaps = 5/401 (1%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 130 ||||| ||||| || ||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct: 82583 tataagacttcgggtgctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcg 82641 Query: 131 -gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||| || ||||||| ||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 82642 agcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataaccgc 82701 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||||||||| || ||||| || |||| || | ||||| |||||||||||| || Sbjct: 82702 tgcattgtcatcatatcgtattatcatgccgttgtcacgtttgagttctttacatgtgcg 82761 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||| ||||||| ||||| ||| ||||||||||||||||| | ||||| ||| ||||| Sbjct: 82762 tacaatcacagctctaattatttctgatctttctagaggcatgttgggcactgcttcttt 82821 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||||||||||||||||||||| |||| | |||||||||| ||||||| ||| |||||| Sbjct: 82822 gattacagcaacaataacatcgccaagatgagcatatcggtgattac---cagttcctat 82878 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 || |||||||||||| |||||| |||||||| | || || |||||||| ||||||||||| Sbjct: 82879 gattcgaatacacattaatttttgagctccactgttatccgctacattcaaaagggtctg 82938 Query: 430 aggttgaatcatattattttgatttcaatttgttatttcaa 470 |||||||||||||| ||||| | || ||| | ||||||||| Sbjct: 82939 aggttgaatcatatcatttttaatttaatctcttatttcaa 82979
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 311 bits (157), Expect = 1e-81 Identities = 327/383 (85%), Gaps = 3/383 (0%) Strand = Plus / Plus Query: 67 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 |||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 80435 tatttataatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattc 80494 Query: 127 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 186 | || ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| Sbjct: 80495 ccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaac 80554 Query: 187 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 246 || |||||||||||||| || ||||| ||||||| || | ||||| |||||||||||| Sbjct: 80555 tgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgt 80614 Query: 247 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 306 ||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| || Sbjct: 80615 acgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgcttc 80674 Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| Sbjct: 80675 tttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcc 80731 Query: 367 tatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggt 426 ||||| ||||||||||||||||| |||||| || | || || ||||||||||||||||| Sbjct: 80732 tatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggt 80791 Query: 427 ctgaggttgaatcatattatttt 449 ||||||||||||||||| ||||| Sbjct: 80792 ctgaggttgaatcatatcatttt 80814
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 299 bits (151), Expect = 5e-78 Identities = 318/373 (85%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82415 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82416 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82475 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82476 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82535 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82536 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82595 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82596 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82652 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || |||| || |||||||||||| |||||| Sbjct: 82653 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82712 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82713 gaggttgaatcat 82725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 297 bits (150), Expect = 2e-77 Identities = 183/194 (94%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 380 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 381 acatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatca 440 |||| ||||||||||||||| |||| |||||||||||||||||||||||||||| ||| | Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 24916707 Query: 441 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 500 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 24916706 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 24916647 Query: 501 cagaaagaaaaacc 514 ||||||||| |||| Sbjct: 24916646 cagaaagaagaacc 24916633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 124 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 183 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 184 aaccgcagcattgtcatc 201 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 105 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 147 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 24916596 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 24916550
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 297 bits (150), Expect = 2e-77 Identities = 183/194 (94%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 380 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 381 acatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatca 440 |||| ||||||||||||||| |||| |||||||||||||||||||||||||||| ||| | Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtctgaggttaaatta 77990 Query: 441 tattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttc 500 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 77989 tattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtctttc 77930 Query: 501 cagaaagaaaaacc 514 ||||||||| |||| Sbjct: 77929 cagaaagaagaacc 77916 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 77879 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 77833
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 291 bits (147), Expect = 1e-75 Identities = 314/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||| |||||||||| ||||||||||| || |||||||| | |||||||||| || Sbjct: 366 taatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattcccgagc 307 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || || Sbjct: 306 gatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaactgctgc 247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| |||||||| Sbjct: 186 aattacagctctgaccacttctgatctttctagagacatattgggtactgcttctttgat 127 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 ||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcctatgat 70 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 ||||||||||||||||| |||||| || | || || ||||||||||||||||||||||| Sbjct: 69 tcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggtctgagg 10 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 291 bits (147), Expect = 1e-75 Identities = 323/381 (84%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcgggagctaatgaaactattttagtaaaattgaactgtctcaattctc 80141 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80142 gggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaactg 80201 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 80202 cagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 80261 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||| Sbjct: 80262 ggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctt 80321 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 80322 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 80378 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || | || ||||||||||| ||| |||||| Sbjct: 80379 tgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtct 80438 Query: 429 gaggttgaatcatattatttt 449 ||||||||||||||| ||||| Sbjct: 80439 gaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82364 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82365 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82424 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82425 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82484 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82485 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82544 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82545 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82601 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || |||| || |||||||||||| |||||| Sbjct: 82602 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82661 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82662 gaggttgaatcat 82674
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 291 bits (147), Expect = 1e-75 Identities = 317/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82376 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82377 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82436 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82437 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82496 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82497 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82556 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82557 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82613 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || |||| || |||||||||||| |||||| Sbjct: 82614 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82673 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82674 gaggttgaatcat 82686
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 283 bits (143), Expect = 3e-73 Identities = 313/369 (84%), Gaps = 3/369 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 ||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| || Sbjct: 366 taatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattcacgagc 307 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 ||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || || Sbjct: 306 aatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctgc 247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 252 |||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 246 attgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgtac 187 Query: 253 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 312 ||||||||||| |||||||| |||||||| || ||||| | |||| ||| |||||||| Sbjct: 186 aattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttgat 127 Query: 313 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 372 ||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 126 tacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatgat 70 Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||||| |||||||||||| | ||||| |||||||| ||| |||||||||| Sbjct: 69 tcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtctgagg 10 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 9 ttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 283 bits (143), Expect = 3e-73 Identities = 322/381 (84%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccggagctaatgaaactattttagtaaaatttaactgtctcaattccc 82726 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | ||||| Sbjct: 82727 gggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaaccg 82786 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 82787 cagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagtac 82846 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| |||| Sbjct: 82847 gtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttctt 82906 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||| ||| |||||||||| |||| | |||||||| Sbjct: 82907 tgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctccta 82963 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || | || || |||||||| |||||||||| Sbjct: 82964 tgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtct 83023 Query: 429 gaggttgaatcatattatttt 449 ||||||||||||||| ||||| Sbjct: 83024 gaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 283 bits (143), Expect = 3e-73 Identities = 316/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82511 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82512 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82571 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82572 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82631 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82632 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82691 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82692 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82748 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || |||| || |||||||||||| |||||| Sbjct: 82749 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82808 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82809 gaggttgaatcat 82821
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 283 bits (143), Expect = 3e-73 Identities = 316/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82508 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82509 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82568 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82569 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82628 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82629 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82688 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82689 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82745 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || |||| || |||||||||||| |||||| Sbjct: 82746 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtct 82805 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 82806 gaggttgaatcat 82818
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 281 bits (142), Expect = 1e-72 Identities = 321/380 (84%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggggctaaggaaactattttagtaaaatttaactgtctcaattcccg 85601 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| || Sbjct: 85602 gacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactgc 85661 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 85662 agcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtacg 85721 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| |||||||| ||||||||||||||||| | || | | | ||||| Sbjct: 85722 tacaattacagctctgattacttctgatctttctagaggcatatttggtactacttcttt 85781 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| |||||||||||||| ||||||||| |||| ||||| |||||| || |||||| Sbjct: 85782 gatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttcctat 85838 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 || ||||||||||||||||| ||| || || | ||||| |||||||| ||| ||||||| Sbjct: 85839 gattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtctg 85898 Query: 430 aggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 85899 gggttgaatcatatcatttt 85918
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 280 bits (141), Expect = 5e-72 Identities = 320/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 130 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80638 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80697 Query: 131 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 190 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80698 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80757 Query: 191 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 250 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80758 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80817 Query: 251 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 310 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80818 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80877 Query: 311 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 370 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80878 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80934 Query: 371 actcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctga 430 | ||||||||||||||||| |||||| || | || ||||||||||| ||| |||||||| Sbjct: 80935 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80994 Query: 431 ggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 80995 ggttgaatcatatcatttt 81013
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 280 bits (141), Expect = 5e-72 Identities = 317/375 (84%), Gaps = 3/375 (0%) Strand = Plus / Plus Query: 67 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 ||||||||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| Sbjct: 86608 tatttataatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattc 86667 Query: 127 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 186 ||||||| ||||||||||| || |||||||| || |||| ||||||||| | ||| Sbjct: 86668 acgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaac 86727 Query: 187 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 246 || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||||| Sbjct: 86728 tgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatgt 86787 Query: 247 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 306 ||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| || Sbjct: 86788 acgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgcttc 86847 Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||||||| ||||| ||| |||||||||| | ||||| |||||| Sbjct: 86848 tttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcc 86904 Query: 367 tatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggt 426 ||||| |||||||||||| | |||||| ||||| | ||||| |||||||| |||||||| Sbjct: 86905 tatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaagggt 86964 Query: 427 ctgaggttgaatcat 441 ||||||||||||||| Sbjct: 86965 ctgaggttgaatcat 86979
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 280 bits (141), Expect = 5e-72 Identities = 320/379 (84%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 130 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80636 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80695 Query: 131 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 190 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80696 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80755 Query: 191 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 250 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80756 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80815 Query: 251 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 310 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80816 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80875 Query: 311 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 370 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80876 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80932 Query: 371 actcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctga 430 | ||||||||||||||||| |||||| || | || ||||||||||| ||| |||||||| Sbjct: 80933 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtctga 80992 Query: 431 ggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 80993 ggttgaatcatatcatttt 81011
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 278 bits (140), Expect = 2e-71 Identities = 322/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83019 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83020 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83079 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83080 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83139 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83140 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83199 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83200 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83256 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| ||| ||||| | || ||||||||||| |||||||| | Sbjct: 83257 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83316 Query: 429 gaggttgaatcatattattttg 450 |||||||||||||||||||||| Sbjct: 83317 gaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 278 bits (140), Expect = 2e-71 Identities = 322/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Minus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 377 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 376 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 317 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 316 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 257 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 256 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 197 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 196 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 140 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| ||| ||||| | || ||||||||||| |||||||| | Sbjct: 139 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 80 Query: 429 gaggttgaatcatattattttg 450 |||||||||||||||||||||| Sbjct: 79 gaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 278 bits (140), Expect = 2e-71 Identities = 322/382 (84%), Gaps = 3/382 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83247 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83248 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83307 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83308 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83367 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83368 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83427 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83428 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83484 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| ||| ||||| | || ||||||||||| |||||||| | Sbjct: 83485 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggttt 83544 Query: 429 gaggttgaatcatattattttg 450 |||||||||||||||||||||| Sbjct: 83545 gaggttgaatcatattattttg 83566
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 276 bits (139), Expect = 8e-71 Identities = 315/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82999 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83000 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83059 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || | Sbjct: 83060 cagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtcc 83119 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83120 gcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttctt 83179 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83180 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83236 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || | || || |||||||||||| |||||| Sbjct: 83237 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83296 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83297 gaggttgaatcat 83309
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 268 bits (135), Expect = 2e-68 Identities = 314/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83236 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83237 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83296 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83297 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83356 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83357 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83416 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83417 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83473 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || | || || |||||||||||| |||||| Sbjct: 83474 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83533 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83534 gaggttgaatcat 83546
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 268 bits (135), Expect = 2e-68 Identities = 316/375 (84%), Gaps = 6/375 (1%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 79295 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| || Sbjct: 79296 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactgc 79355 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| ||||| Sbjct: 79356 agcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtacg 79415 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 ||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| ||||| Sbjct: 79416 tacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttcttt 79475 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| |||||||||||||| |||||||||||||||||||| | || | ||||||||| Sbjct: 79476 gatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcctat 79532 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 || ||||||||||||||||| |||||| || | |||||||||||||| ||| ||||||| Sbjct: 79533 gattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtctg 79592 Query: 430 aggttgaatcatatt 444 ||||||||||||||| Sbjct: 79593 aggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 268 bits (135), Expect = 2e-68 Identities = 314/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83479 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83480 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83539 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 83540 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 83599 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| |||| Sbjct: 83600 gcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttctt 83659 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83660 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83716 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| |||||||||||| |||| |||||| || | || || |||||||||||| |||||| Sbjct: 83717 tgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtct 83776 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83777 gaggttgaatcat 83789
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 268 bits (135), Expect = 2e-68 Identities = 314/373 (84%), Gaps = 3/373 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83234 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83235 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83294 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83295 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83354 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83355 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83414 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83415 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83471 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| ||||||||||||||||| |||||| || | || || |||||||||||| |||||| Sbjct: 83472 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtct 83531 Query: 429 gaggttgaatcat 441 ||||||||||||| Sbjct: 83532 gaggttgaatcat 83544
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 266 bits (134), Expect = 8e-68 Identities = 313/372 (84%), Gaps = 3/372 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || |||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 85087 ttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccg 85146 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| ||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85147 ggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggc 85206 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| || |||| |||| ||||| |||||||| ||||| Sbjct: 85207 agcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacgagtacg 85266 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| || ||||| |||||||||||||| | | || | ||| || || Sbjct: 85267 tacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttcctt 85326 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 85327 gatcacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 85383 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 |||||||||||||||||||| ||| || || | || ||||||||||| ||| ||||||| Sbjct: 85384 gactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg 85443 Query: 430 aggttgaatcat 441 |||||||||||| Sbjct: 85444 aggttgaatcat 85455
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 246 bits (124), Expect = 7e-62 Identities = 316/378 (83%), Gaps = 9/378 (2%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 3641 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc-- 187 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3640 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaac 3581 Query: 188 -gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 246 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| || Sbjct: 3580 tgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagt 3521 Query: 247 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 306 |||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| || Sbjct: 3520 acgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttc 3461 Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 |||||| |||||||||||||| |||||||||||||||||||| | || | |||||| Sbjct: 3460 tttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcc 3404 Query: 367 tatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggt 426 ||||| ||||||||||||||||| |||||| || | |||||||||||||| ||| |||| Sbjct: 3403 tatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggt 3344 Query: 427 ctgaggttgaatcatatt 444 |||||||||||||||||| Sbjct: 3343 ctgaggttgaatcatatt 3326
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 169 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 228 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 288 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 289 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 338 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 169 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 228 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 288 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 289 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 338 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 242 bits (122), Expect = 1e-60 Identities = 316/380 (83%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 80755 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 80756 tgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgc 80815 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||||||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 80816 ggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtacg 80875 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| ||| ||||| |||||||||||||| | | || | ||| ||||| Sbjct: 80876 tacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttcttt 80935 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 |||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 80936 gattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 80992 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 | ||||||||||||||||| || ||| || | |||||||||||||| ||| ||| || Sbjct: 80993 tattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggtttg 81052 Query: 430 aggttgaatcatattatttt 449 ||||||||||||| ||||| Sbjct: 81053 tggttgaatcatatcatttt 81072
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 230 bits (116), Expect = 4e-57 Identities = 309/370 (83%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 131 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| | Sbjct: 366 taatacttcaggggctaatgaaactattttagtaaaattcaactgtctcaactc-tcgag 308 Query: 132 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 191 | || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || | Sbjct: 307 cgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgctg 248 Query: 192 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 251 ||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || |||| Sbjct: 247 cattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgta 188 Query: 252 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 311 |||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| ||||||| Sbjct: 187 caattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttga 128 Query: 312 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 371 |||| ||||||||||| || |||||| ||||||| || |||||| ||||||||||| Sbjct: 127 ttaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatga 71 Query: 372 ctcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgag 431 || ||||||||| ||||||| ||| || | ||||| |||||||||||| |||||||| Sbjct: 70 ttctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtctgag 11 Query: 432 gttgaatcat 441 |||||||||| Sbjct: 10 gttgaatcat 1
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 226 bits (114), Expect = 7e-56 Identities = 305/368 (82%), Gaps = 3/368 (0%) Strand = Plus / Plus Query: 74 aatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggca 133 ||||| || ||||||||||| ||||| || || |||||||| | |||||||||| | || Sbjct: 87322 aatacctcgggagctaatgatactatcttagtgaaattcaaatgtctcaattccccagcg 87381 Query: 134 atcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagca 193 |||| ||||| ||||||||||||||||| || || | | ||||||| | ||| || ||| Sbjct: 87382 atcgaaccaaagactcgagttccttttggatttccctctggatcaataacaactgctgca 87441 Query: 194 ttgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtaca 253 ||||||||||| || ||||||||||||| || | ||||| ||||||||||||||||||| Sbjct: 87442 ttgtcatcatatcgtattattataccgttgtcacgtttgagttctttacatgtacgtaca 87501 Query: 254 attacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgatt 313 |||||||||| || ||||| |||||||| || ||||| | ||| | ||| ||||||||| Sbjct: 87502 attacagctctgatcacttctgatctttccaggggcatattgggtactgcttctttgatt 87561 Query: 314 acagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgact 373 |||||||||||||| ||||||||| |||||||||| | |||| |||||||| || | Sbjct: 87562 acagcaacaataacgtcaccaatatgagcatatcgggggttac---tagctcctacgatt 87618 Query: 374 cgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggt 433 |||||||||||||||| |||||| || | ||||| |||||||| ||| ||| |||| | Sbjct: 87619 cgaatacacatcaattctcgagccccgctgttgtccgctacattcaaataggtttgagct 87678 Query: 434 tgaatcat 441 |||||||| Sbjct: 87679 tgaatcat 87686
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 226 bits (114), Expect = 7e-56 Identities = 314/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 85861 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 85862 ggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacagc 85921 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| ||||| Sbjct: 85922 agcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtacg 85981 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| | ||||| ||||||||||| | | || ||||| || || Sbjct: 85982 tacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcctt 86041 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| || Sbjct: 86042 gatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccgat 86098 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 || |||||||||||| |||| |||||| ||| | || || || ||||| ||| |||| || Sbjct: 86099 gattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttg 86158 Query: 430 aggttgaatcatattatttt 449 |||||||||||||| ||||| Sbjct: 86159 aggttgaatcatatcatttt 86178
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 210 bits (106), Expect = 4e-51 Identities = 277/334 (82%), Gaps = 15/334 (4%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 119 |||||||||||| |||||| ||||||||| |||| ||| |||| || ||||||| || Sbjct: 99133 ctactagtatttttaatacctcaggagctcatgagactcttttagtgaaattcataagtc 99074 Query: 120 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 179 |||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 99073 tcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatcaa 99014 Query: 180 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 239 | | ||||| |||||||| || ||||| ||||||| || | ||||| ||||| Sbjct: 99013 tgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttctt 98962 Query: 240 tacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttgg 295 ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | Sbjct: 98961 tacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcattttg 98902 Query: 296 ggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatta 355 |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct: 98901 ggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatta 98842 Query: 356 ccagcagctcctatgactcgaatacacatcaatt 389 | ||||||||| || ||||||||| ||||||| Sbjct: 98841 c---cagctcctaagattcgaatacatatcaatt 98811
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 210 bits (106), Expect = 4e-51 Identities = 312/380 (82%), Gaps = 3/380 (0%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 85546 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85547 ggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactgc 85606 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 85607 agcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacg 85666 Query: 250 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 309 |||||||||||||| || || || |||||||||||||| | | || ||||| || || Sbjct: 85667 tacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcctt 85726 Query: 310 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 369 ||| ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| Sbjct: 85727 gatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctcctat 85783 Query: 370 gactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctg 429 || || ||||||||| |||| ||| || || | || || |||||||| ||| || | || Sbjct: 85784 gattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggctttg 85843 Query: 430 aggttgaatcatattatttt 449 |||||||||||||| ||||| Sbjct: 85844 aggttgaatcatatcatttt 85863
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 208 bits (105), Expect = 2e-50 Identities = 311/377 (82%), Gaps = 7/377 (1%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 79846 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79847 tgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactgc 79906 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||||| ||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 79907 ggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtacg 79966 Query: 250 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 307 |||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79967 tacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttcc 80024 Query: 308 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 367 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| Sbjct: 80025 ttgattacagcaacaataacgtcaccaatatgagcatagcggcgattac---tagctcct 80081 Query: 368 atgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtc 427 || | |||||||||||||||||||| ||| || | |||||||||||||| ||| ||| Sbjct: 80082 attattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggtt 80141 Query: 428 tgaggttgaatcatatt 444 || |||||||||||||| Sbjct: 80142 tgtggttgaatcatatt 80158
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 204 bits (103), Expect = 2e-49 Identities = 312/381 (81%), Gaps = 3/381 (0%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggcgctaatgaaactattttagtgaaattgaactgtctcaattccc 78633 Query: 129 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 188 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 78634 gggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaactg 78693 Query: 189 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 248 ||||||| |||||||| | ||||||||||| | | ||||| ||||||||| |||| Sbjct: 78694 cagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagtac 78753 Query: 249 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 308 ||||||||||||||| || ||||| |||||||||| || | | || | ||| |||| Sbjct: 78754 gtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttctt 78813 Query: 309 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 368 ||||||||||||||| || ||||||||| ||| ||||| |||||| ||| ||||| Sbjct: 78814 tgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tccta 78870 Query: 369 tgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtct 428 ||| |||||||||||||||||| || ||||| |||| || |||||||||||| |||| | Sbjct: 78871 tgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggttt 78930 Query: 429 gaggttgaatcatattatttt 449 ||||||||||||||| ||||| Sbjct: 78931 gaggttgaatcatatcatttt 78951
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 2e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 244 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 304 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 349 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 161 bits (81), Expect = 3e-36 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 410 gctacatttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttca 469 ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct: 1199 gctacatttaaaagggtctgaggttgaatcatattatttgg-tttccatttgttatttca 1141 Query: 470 a-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 513 | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1140 aatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 107 bits (54), Expect = 4e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 288 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 347 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 348 gc 349 || Sbjct: 1201 gc 1200 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Minus Query: 541 ttttagggttctatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1068 ttttggggttctatatctctaatcgaagaaattgacttcgtatgggcattttactggc 1011
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 54859 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 54918 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 54919 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 54977 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54978 attgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 137662 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 137721 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 137722 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 137780 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137781 attgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 130132 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 130133 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 130191 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130192 actgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 66902 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 66903 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 66961 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66962 actgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 3e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330157
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 163 bits (82), Expect = 8e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 132 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5365 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 5306 Query: 133 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 192 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 5305 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 5247 Query: 193 attgtcatcatagcggattattataccgtcttcgcatttgaa 234 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5246 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 229 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 284 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 285 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 344 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 345 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 389 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 260 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 315 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 316 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 375 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 376 aatacacatcaatt 389 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 60 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 113 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 434 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 494 gtctttccagaaagaaaaacc 514 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 147753 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 147707
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 434 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 494 gtctttccagaaagaaaaacc 514 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 552 tatatctctaatcgaataaattgacttcgtatgggcattttactggc 598 ||||| ||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 55515 tatatttctaaccgaagaaattgacttcgtatgggcattttgctggc 55469
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 158 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 217 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 218 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 277 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 278 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 337 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 338 cgagcatat 346 |||| |||| Sbjct: 33258 cgagtatat 33250
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 141 bits (71), Expect = 3e-30 Identities = 179/215 (83%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 5845 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| || Sbjct: 5844 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactgc 5785 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| | ||||||||||||| | ||| | || |||||| ||||| Sbjct: 5784 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtacg 5725 Query: 250 tacaattacagctcgaattacttcggatctttcta 284 |||||||||||||| || ||||| |||||||||| Sbjct: 5724 tacaattacagctctgatcacttcagatctttcta 5690 Score = 58.0 bits (29), Expect = 3e-05 Identities = 115/143 (80%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 367 tatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggt 426 || || |||||||||||||| || || ||||| | || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 427 ctgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 5550 ttgaggttgaatcatatcatttt 5528
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 92 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 151 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 152 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 211 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 212 attataccgtcttcgcatttgaa 234 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 131 bits (66), Expect = 3e-27 Identities = 305/382 (79%), Gaps = 7/382 (1%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 45042 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 44983 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || ||| ||||| ||||||||||||||| || |||| || |||||| | |||||| Sbjct: 44982 ggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgc 44923 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||| Sbjct: 44922 cgcattatcatcatactttattattataccattactacgttttagttctttacaagtacg 44863 Query: 250 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 307 |||||||||||| | || ||||| |||||||||| || | |||||| | ||| | | Sbjct: 44862 tacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgctttt 44805 Query: 308 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 367 |||||||||||||||| || ||||||||| |||||| || |||||| ||| |||| Sbjct: 44804 ttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcct 44748 Query: 368 atgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtc 427 |||| ||||||||||||||||| || ||||| |||| || |||||||||||| ||| Sbjct: 44747 atgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtt 44688 Query: 428 tgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 44687 tgaggttgaatcatatcatttt 44666
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 125 bits (63), Expect = 2e-25 Identities = 177/215 (82%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 79709 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 79768 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || || | ||| | ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79769 ggcgattgcacaaaagattcgagttccttttggatttccttcttgatcaatgacaactgc 79828 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| | ||||||||||||| | ||||| ||||||||| ||||| Sbjct: 79829 agcattatcatcatactgaattattataccgttgctacgtttgagttctttacaagtacg 79888 Query: 250 tacaattacagctcgaattacttcggatctttcta 284 |||||||||||||| || ||||| |||||||||| Sbjct: 79889 tacaattacagctctgatcacttctgatctttcta 79923 Score = 73.8 bits (37), Expect = 6e-10 Identities = 117/143 (81%), Gaps = 3/143 (2%) Strand = Plus / Plus Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||| || ||||||||| ||||||||| |||||| ||| ||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattactagc---tcc 80002 Query: 367 tatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggt 426 || || |||||||||||||| || || ||||| |||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 427 ctgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 80063 ttgaggttgaatcatatcatttt 80085
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 123 bits (62), Expect = 7e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 65 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 124 |||| |||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 60553 agtacttataatacttcgggagccaatgaaactattttcgtgaaattcaattgtctcaat 60612 Query: 125 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 184 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 60613 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 60672 Query: 185 accgcagcattgtcatca 202 || || |||||||||||| Sbjct: 60673 acggctgcattgtcatca 60690
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 117 bits (59), Expect = 4e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 954 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 1013 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 189 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||| ||| || Sbjct: 1014 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattacaactgc 1073 Query: 190 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 249 |||||| |||||||| | ||||||||||||| | ||| | || |||||| || || Sbjct: 1074 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtccg 1133 Query: 250 tacaattacagctcgaattacttcggatctttcta 284 |||||||||||||| || ||||| |||||||||| Sbjct: 1134 tacaattacagctctgatcacttctgatctttcta 1168 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 414 catttaaaagggtctgaggttgaatcatattatttt 449 |||||||| | || |||||||||||||||| ||||| Sbjct: 1296 catttaaatgagtttgaggttgaatcatatcatttt 1331
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 65 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 124 |||| |||||| ||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 58649 agtacttataagacttcgggagccaatgaaactattttagtgaaattcaattgtctcaat 58708 Query: 125 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 184 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 58709 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 58768 Query: 185 accgcagcattgtcatca 202 || || |||||||||||| Sbjct: 58769 acggctgcattgtcatca 58786
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 107 bits (54), Expect = 4e-20 Identities = 248/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Plus Query: 142 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 201 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 202 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 261 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 262 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 319 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 320 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 379 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 380 cacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatc 439 |||||||||| || ||||| |||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 30839 Query: 440 atattatttt 449 |||| ||||| Sbjct: 30840 atatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 107 bits (54), Expect = 4e-20 Identities = 248/310 (80%), Gaps = 7/310 (2%) Strand = Plus / Minus Query: 142 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 201 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 202 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 261 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 262 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 319 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 320 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 379 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 380 cacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatc 439 |||||||||| || ||||| |||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatc 114664 Query: 440 atattatttt 449 |||| ||||| Sbjct: 114663 atatcatttt 114654
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 129 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 583 Query: 130 ggcaatcgcgccaaaaactcgagttccttttgg 162 ||||||||| ||||||||||| ||||||||||| Sbjct: 584 ggcaatcgcaccaaaaactcgggttccttttgg 616
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatattattttgatttcaatttgttatttcaatgc 473 |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 568 catttaaaagggtctgaggttgaatcatatcatttttatttgaatctgttatttcaatgc 509 Query: 474 aaa 476 ||| Sbjct: 508 aaa 506
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 91.7 bits (46), Expect = 2e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 77 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 136 |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcaggagctaaagaaactattttagtaaaatttaagtctctcaattctctggcaact 41422 Query: 137 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 196 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41421 ggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatta 41362 Query: 197 tcatca 202 |||||| Sbjct: 41361 tcatca 41356 Score = 48.1 bits (24), Expect = 0.033 Identities = 57/68 (83%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggt 433 ||||||||||| | ||||||||||| | ||||| |||||||||||| | ||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaataagactgaggt 41128 Query: 434 tgaatcat 441 |||||||| Sbjct: 41127 tgaatcat 41120
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 4e-14 Identities = 113/136 (83%) Strand = Plus / Plus Query: 67 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 76250 tatttataaaacttctggagctaacgaaactattttagtaaaattagattctcttaattc 76309 Query: 127 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 186 ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | ||| Sbjct: 76310 tctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaac 76369 Query: 187 cgcagcattgtcatca 202 || ||||| |||||| Sbjct: 76370 tgctgcattatcatca 76385 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 364 tcctatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaag 423 |||||| |||||||| ||||| | ||||||||||||| |||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 424 ggtctgaggttgaatcat 441 || |||||||||||||| Sbjct: 76604 agtttgaggttgaatcat 76621 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 233 aattctttacatgtacgtacaattacagctc 263 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 246 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 296 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 85.7 bits (43), Expect = 2e-13 Identities = 114/135 (84%), Gaps = 2/135 (1%) Strand = Plus / Plus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 128 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| | Sbjct: 79910 tttataatacttcaggtgctaacgaaactattttagtaaaattagattcacgtaattc-t 79968 Query: 129 cg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 187 || |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79969 cgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataact 80028 Query: 188 gcagcattgtcatca 202 |||||||| |||||| Sbjct: 80029 gcagcattatcatca 80043 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 377 atacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttga 436 |||||||| ||||| || |||||| |||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagtttgaggttga 80274 Query: 437 atcat 441 ||||| Sbjct: 80275 atcat 80279
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 79.8 bits (40), Expect = 9e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 69 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 120 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcaggagccaatgaaactattttagtaaaattgaattctct 5535 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Minus Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||| |||| ||||||| | |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgtttgagg 5226 Query: 433 ttgaatcatatt 444 |||||||||||| Sbjct: 5225 ttgaatcatatt 5214
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 237 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 292 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 293 tggggcaatgcgtctttgattaca 316 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 124 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 183 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 184 aaccgcagcattgtcatc 201 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaa 421 |||||||||||||| ||||||||||||| | |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 235 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 291 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ccaaaaactcgagttccttt 159 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaa 421 |||||||||||||| ||||||||||||| | |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 235 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 291 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ccaaaaactcgagttccttt 159 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 73.8 bits (37), Expect = 6e-10 Identities = 111/135 (82%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 315 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 374 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 375 gaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggtt 434 |||||||||| |||| |||||| ||| | || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggtttgaggtt 117 Query: 435 gaatcatattatttt 449 ||||||||| ||||| Sbjct: 118 gaatcatatcatttt 132
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatattatttt 449 |||||||||||||||||||||||||||||||||||| Sbjct: 561 catttaaaagggtctgaggttgaatcatattatttt 526
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 9e-09 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 199 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 200 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 259 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 260 gctc 263 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 140 ccaaaaactcgagttccttttgggttgcctttttgat 176 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 67.9 bits (34), Expect = 4e-08 Identities = 108/130 (83%), Gaps = 2/130 (1%) Strand = Plus / Minus Query: 73 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 131 ||||||||| ||||| |||| ||||||||| || ||||| |||| ||||||||| ||| | Sbjct: 366 taatacttcgggagccaatggaactatttttgtgaaattaaattgtctcaattc-tcgag 308 Query: 132 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 191 ||| | |||||||||||||||||||| || || |||| |||||||| | ||| || | Sbjct: 307 caactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgctg 248 Query: 192 cattgtcatc 201 |||||||||| Sbjct: 247 cattgtcatc 238
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 373 tcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgagg 432 |||||||||||||||||||||||||||| | ||||||| ||| |||||| | ||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaataactttgagg 79772 Query: 433 ttgaatcat 441 ||||||||| Sbjct: 79773 ttgaatcat 79781 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 78 cttcaggagctaatgaaactattttggtaaaatt 111 ||||||||||||| || |||||||| |||||||| Sbjct: 79421 cttcaggagctaaagatactattttagtaaaatt 79454
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 6e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatattatttt 449 |||||||||||||||||||||||||||||| ||||| Sbjct: 533 catttaaaagggtctgaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 6e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 410 gctacatttaaaagggtctgaggttgaatcatattatttt 449 |||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtctgaggttgaatcatatcatttt 2010
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 105 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 147 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcata 442 ||||||||||||||||||||||||||||| Sbjct: 543 catttaaaagggtctgaggttgaatcata 515
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 58.0 bits (29), Expect = 3e-05 Identities = 115/143 (80%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 307 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 366 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 367 tatgactcgaatacacatcaattttcgagctccaatattgtctgctacatttaaaagggt 426 || || |||||||||||||| || || ||||| | || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 427 ctgaggttgaatcatattatttt 449 |||||||||||||||| ||||| Sbjct: 1141 ttgaggttgaatcatatcatttt 1119
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcat 441 |||||||||||||||||||||||||||| Sbjct: 558 catttaaaagggtctgaggttgaatcat 531
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 371 actcgaatacacatcaattttcgagctccaatattgtctgctacatttaaa 421 |||||||||||||| ||||| ||||| ||| |||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 77 acttcaggagctaatgaaactattttggtaaaatt 111 |||||||||||||| ||||| ||||| |||||||| Sbjct: 140167 acttcaggagctaaagaaacaatttttgtaaaatt 140201
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 96 ctattttggtaaaattcaattctctcaattc 126 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 77 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 126 |||||||||||||| || ||||| || |||||||| |||||||| ||||| Sbjct: 5584 acttcaggagctaaagatactatcttagtaaaatttaattctcttaattc 5535
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 50.1 bits (25), Expect = 0.008 Identities = 58/69 (84%) Strand = Plus / Minus Query: 377 atacacatcaattttcgagctccaatattgtctgctacatttaaaagggtctgaggttga 436 |||||||| |||||||| |||||| |||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgtttgaggttga 16420 Query: 437 atcatatta 445 ||||||||| Sbjct: 16419 atcatatta 16411
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 374 cgaatacacatcaattttcgagctccaatattgtctgctacatttaaa 421 |||||||||||||| || |||||||| |||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagc 360 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccaatattgtctgctacatttaaa 421 ||||||||||| |||| ||||| ||| |||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 ctttacatgtacgtacaattacagctcg 264 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagc 360 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaa 437 |||||||||||||||||||||||| Sbjct: 523 catttaaaagggtctgaggttgaa 500
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Minus Query: 321 caataacatcaccaatacgagcatatcgctgattaccagc 360 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 374 cgaatacacatcaattttcgagctccaatattgtctgctacatttaaa 421 ||||||||||| |||| ||||| ||| |||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 237 ctttacatgtacgtacaattacagctcg 264 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 311 attacagcaacaataacatcaccaatacgagcata 345 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 90 atgaaactattttggtaaaattcaatt 116 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 311 attacagcaacaataacatcaccaatacgagcata 345 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 371 actcgaatacacatcaattttcgagctccaatatt 405 |||||||||||||| ||||| ||||||||| |||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaatt 111 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 2041 tataatacttccggagctaaagaaataatttttgtaaaatt 2001 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 313 tacagcaacaataacatcaccaatacgagcata 345 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 311 attacagcaacaataacatcaccaatacgagcata 345 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 440 atattattttgatttcaatttgttatt 466 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>dbj|AB028608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9 Length = 43500 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 75 atacttcaggagctaatgaaactattt 101 |||| |||||||||||||||||||||| Sbjct: 22874 atacctcaggagctaatgaaactattt 22900
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 415 atttaaaagggtctgaggttgaa 437 ||||||||||||||||||||||| Sbjct: 65424 atttaaaagggtctgaggttgaa 65402
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 371 actcgaatacacatcaattttcgagctccaatatt 405 |||||||||||||| ||||| ||||||||| |||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 313 tacagcaacaataacatcaccaatacgagcata 345 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 71 tataatacttcaggagctaatgaaactattttggtaaaatt 111 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 52181 tataatacttccggagctaaagaaataatttttgtaaaatt 52221
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaggatgaaagaaatattgtctttcc 501 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 442 attattttgatttcaatttgtt 463 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.52 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatat 443 |||||||||||| ||||||||||||||||| Sbjct: 528 catttaaaaggg-ctgaggttgaatcatat 500
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.52 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 414 catttaaaagggtctgaggttgaatcatat 443 |||||||||||| ||||||||||||||||| Sbjct: 545 catttaaaaggg-ctgaggttgaatcatat 517
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 aaggatgaaagaaatattgtctttcc 501 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ccttttgggttgcctttttga 175 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 |||||| ||||||||||||| |||||| ||||| Sbjct: 352059 ttataaaacttcaggagctagtgaaacgatttt 352027
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 377 atacacatcaattttcgagctccaatattgtctgctacatt 417 |||||||||||||| ||||| || |||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 465 tttcaatgcaaaaggatgaaagaaa 489 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>gb|AC132083.3| Mus musculus BAC clone RP24-540G23 from chromosome 5, complete sequence Length = 158764 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaattc 42 ||||||||||||||||||||| Sbjct: 90572 acaatctactaatattaattc 90592
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 atgaaactattttggtaaaat 110 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 tgtctttccagaaagaaaaac 513 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 acagcaacaataacatcacca 334 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 gaaagaaatattgtctttccagaaa 506 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 atttcaatttgttatttcaat 471 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 aatgaaactattttggtaaaa 109 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 ||||||||||||||| || |||||||| ||||| Sbjct: 109779 ttataatacttcaggtgccaatgaaacgatttt 109811
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 tttcaatttgttatttcaatgcaaa 476 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 aaaggatgaaagaaatattgt 495 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ttattttgatttcaatttgtt 463 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 ||||||||||||||| || |||||||| ||||| Sbjct: 156967 ttataatacttcaggtgccaatgaaacgatttt 156935 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 tattttgatttcaatttgttattt 467 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 attttggtaaaattcaattct 118 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 taaaattcaattctctcaatt 125 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 atttcaatttgttatttcaat 471 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 377 atacacatcaattttcgagctccaatattgtctgctacatt 417 |||||||||||||| ||||| || |||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 tttcaatttgttatttcaatgcaaa 476 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 70 ttataatacttcaggagctaatgaaactatttt 102 ||||||||||||||| || |||||||| ||||| Sbjct: 1801391 ttataatacttcaggtgccaatgaaacgatttt 1801423
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 atgaaactattttggtaaaat 110 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 acagcaacaataacatcacca 334 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 ttattttgatttcaatttgtt 463 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 40.1 bits (20), Expect = 8.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 390 ttcgagctccaatattgtctgctacatttaaaagggtctgaggttgaatcat 441 ||||||||||| |||| || |||||||||||| | |||||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaataagattgaggttgaatcat 94442
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 tattttgatttcaatttgttattt 467 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 tctttccagaaagaaaaacc 514 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tactagtatttataatactt 80 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 attttgatttcaatttgtta 464 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tctttgattacagcaacaat 324 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 tattgtctgctacatttaaa 421 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tctgctacatttaaaagggt 426 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gtcttcgcatttgaattctt 239 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgattacagcaacaataaca 328 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete sequence Length = 175745 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 99502 attaattctttgatctaaat 99521
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 aaatattgtctttccagaaa 506 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 tctttccagaaagaaaaacc 514 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 tcaatgcaaaaggatgaaag 486 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 470 atgcaaaaggatgaaagaaatatt 493 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ttcctcggcaatcgcgccaa 143 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 aagaaatattgtctttccag 503 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 aatcatattattttgatttc 455 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 accaatacgagcatatcgct 350 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 atttcaatttgttatttcaa 470 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 catttgaattctttacatgt 246 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>emb|BX664600.7| Zebrafish DNA sequence from clone CH211-112M13, complete sequence Length = 167489 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 80174 attaattctttgatctaaat 80193
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 470 atgcaaaaggatgaaagaaatatt 493 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 caattataaccgcagcattgtcat 200 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AC087254.2| Danio rerio clone 91J1, complete sequence Length = 77731 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 59268 attaattctttgatctaaat 59249
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 taatgaaactattttggtaaaatt 111 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cagcaacaataacatcacca 334 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 catttgaattctttacatgt 246 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaatt 41 |||||||||||||||||||| Sbjct: 34655 acaatctactaatattaatt 34674
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaatctactaatattaatt 41 |||||||||||||||||||| Sbjct: 159381 acaatctactaatattaatt 159400
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 atgcaaaaggatgaaagaaatatt 493 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124
>gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete sequence Length = 190066 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ccaatattgtctgctacatt 417 |||||||||||||||||||| Sbjct: 80375 ccaatattgtctgctacatt 80394
>emb|BX511028.13| Zebrafish DNA sequence from clone DKEY-161N17 in linkage group 20, complete sequence Length = 225010 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 attaattctttgatctaaat 54 |||||||||||||||||||| Sbjct: 146084 attaattctttgatctaaat 146065
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 tattttgatttcaatttgttattt 467 ||||||| |||||||||||||||| Sbjct: 28243 tattttgttttcaatttgttattt 28266
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ttcctcggcaatcgcgccaa 143 |||||||||||||||||||| Sbjct: 4645443 ttcctcggcaatcgcgccaa 4645424
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ttcctcggcaatcgcgccaa 143 |||||||||||||||||||| Sbjct: 4620428 ttcctcggcaatcgcgccaa 4620409
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 attttggtaaaattcaattc 117 |||||||||||||||||||| Sbjct: 2952252 attttggtaaaattcaattc 2952271
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tctgctacatttaaaagggt 426 |||||||||||||||||||| Sbjct: 141843 tctgctacatttaaaagggt 141824
>gb|AC158600.17| Mus musculus 10 BAC RP24-211K19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tactagtatttataatactt 80 |||||||||||||||||||| Sbjct: 72121 tactagtatttataatactt 72140 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tactagtatttataatactt 80 |||||||||||||||||||| Sbjct: 19820 tactagtatttataatactt 19801
>emb|CR385050.10| Zebrafish DNA sequence from clone DKEY-22I16 in linkage group 1, complete sequence Length = 145760 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tattttgatttcaatttgtt 463 |||||||||||||||||||| Sbjct: 109311 tattttgatttcaatttgtt 109292
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 233 aattctttacatgtacgtacaattacagctcg 264 ||||||||||| || ||||| ||||||||||| Sbjct: 83933 aattctttacaagtgcgtactattacagctcg 83964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,604,116 Number of Sequences: 3902068 Number of extensions: 6604116 Number of successful extensions: 138859 Number of sequences better than 10.0: 238 Number of HSP's better than 10.0 without gapping: 253 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 135913 Number of HSP's gapped (non-prelim): 2806 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)