ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4p08 |
|---|---|
| Clone Library Name | barley_pub |
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 200 bits (509), Expect = 2e-51 Identities = 105/122 (86%), Positives = 105/122 (86%) Frame = -3 Query: 500 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWF 321 PNKPKASTSIWD MAFSGPAPERINGRLAMVGFVTALAVEA QAWF Sbjct: 51 PNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWF 110 Query: 320 AYTVAVLSMASLVPLLQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPFI 141 AYTVAVLSMASLVPLLQGESAEGRAG IMNANAELWNGRFAMLGLVALAATEIITGAPFI Sbjct: 111 AYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170 Query: 140 NV 135 NV Sbjct: 171 NV 172
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 199 bits (505), Expect = 5e-51 Identities = 103/122 (84%), Positives = 105/122 (86%) Frame = -3 Query: 500 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWF 321 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEA QAWF Sbjct: 46 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWF 105 Query: 320 AYTVAVLSMASLVPLLQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPFI 141 AYTVA+LSMASLVPLLQGESAEGRAG IMNANAELWNGRFAM+GLVALAATEIITG PFI Sbjct: 106 AYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165 Query: 140 NV 135 NV Sbjct: 166 NV 167
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 149 bits (376), Expect = 4e-36 Identities = 77/123 (62%), Positives = 90/123 (73%), Gaps = 1/123 (0%) Frame = -3 Query: 500 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXX-XXXQAW 324 P KA+ S+WDA+AFSGPAPERINGRLAMVGFV AL+VEA AW Sbjct: 109 PVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAW 168 Query: 323 FAYTVAVLSMASLVPLLQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPF 144 F T V S+ASL+PLLQG+S E ++ I +A+AELWNGRFAMLGLVALAATE ITGAPF Sbjct: 169 FLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPF 228 Query: 143 INV 135 +N+ Sbjct: 229 VNI 231
>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)| Length = 196 Score = 119 bits (297), Expect = 6e-27 Identities = 62/117 (52%), Positives = 75/117 (64%) Frame = -3 Query: 491 PKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWFAYT 312 PK ST D MAFSGPAPERINGRLAM+GFV A+ VE AWF T Sbjct: 81 PKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGV-AWFLGT 139 Query: 311 VAVLSMASLVPLLQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPFI 141 +LS+ASL+P QG S E ++ +IM+++AE WNGR AMLGLVALA TE + G + Sbjct: 140 SVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196
>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor| Length = 199 Score = 105 bits (261), Expect = 9e-23 Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 1/123 (0%) Frame = -3 Query: 500 PNKPKASTS-IWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAW 324 PN+ + +T D +F G APERINGR AM+GFV A+ VE W Sbjct: 78 PNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVM-W 136 Query: 323 FAYTVAVLSMASLVPLLQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPF 144 F T AVL +A+L+P+ +G S E + N++AE+WNGRFAM+GLVALA TE + G P Sbjct: 137 FLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPL 196 Query: 143 INV 135 INV Sbjct: 197 INV 199
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 62.0 bits (149), Expect = 9e-10 Identities = 44/116 (37%), Positives = 56/116 (48%) Frame = -3 Query: 500 PNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWF 321 P A+ ++ + M FSG APE INGRLAM+GFV AL E Sbjct: 58 PPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTL--I 114 Query: 320 AYTVAVLSMASLVPLLQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITG 153 A T + S ASL+P +G A +AE+ NGRFAM+G A+ E I G Sbjct: 115 ALTFVLFSAASLIPAF--ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 36.6 bits (83), Expect = 0.039 Identities = 16/34 (47%), Positives = 25/34 (73%) Frame = -3 Query: 236 MNANAELWNGRFAMLGLVALAATEIITGAPFINV 135 M ++AE+WNGR AMLG +AL E++TG +++ Sbjct: 351 MTSSAEVWNGRIAMLGFIAL-IIELVTGQGLLHM 383
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 36.6 bits (83), Expect = 0.039 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = -3 Query: 227 NAELWNGRFAMLGLVALAATEIITG 153 +AE WNGRFAM+G +A+ E++TG Sbjct: 13 SAETWNGRFAMIGFMAVIFIELVTG 37
>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 512 Score = 35.4 bits (80), Expect = 0.086 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 227 NAELWNGRFAMLGLVALAATEIITGAPFIN 138 +AE WNGR AML ++AL E+ TG F++ Sbjct: 475 SAETWNGRAAMLAVLALLVLEVTTGKGFLH 504
>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 526 Score = 35.4 bits (80), Expect = 0.086 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 227 NAELWNGRFAMLGLVALAATEIITGAPFIN 138 +AE WNGR AML ++AL E+ TG F++ Sbjct: 488 SAETWNGRAAMLAVLALLVLEVTTGEGFLH 517
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 35.0 bits (79), Expect = 0.11 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -3 Query: 227 NAELWNGRFAMLGLVALAATEIITG 153 NAE+WNGR AMLG +AL E++TG Sbjct: 354 NAEVWNGRIAMLGFLAL-LVELLTG 377
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 35.0 bits (79), Expect = 0.11 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = -3 Query: 230 ANAELWNGRFAMLGLVALAATEIITG 153 + AE WNGR AMLG +A TE +TG Sbjct: 14 SGAENWNGRLAMLGFIAALLTESLTG 39 Score = 29.3 bits (64), Expect = 6.2 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = -3 Query: 476 SIWDAMAFSGPAPERINGRLAMVGFVTALAVEA 378 +IW+ SG E NGRLAM+GF+ AL E+ Sbjct: 6 NIWNWGFTSGA--ENWNGRLAMLGFIAALLTES 36
>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein| 16) Length = 1271 Score = 33.1 bits (74), Expect = 0.43 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Frame = -2 Query: 495 QTQGEHLDLGRDGVQRPGAGAHQRAASHGRLRNGTCGGGRSRRRAPLAARQRHRAGV-VR 319 Q Q +D G+DGV+ ++ A +R+ + RSR R+P R R R+G R Sbjct: 369 QQQDMDIDEGQDGVEEE---VFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKR 425 Query: 318 LHRXXXXXXXXXXASPGRERRGQSRHHHERQRGALE 211 HR S RER+ +S + +R A E Sbjct: 426 KHR-------KRSRSRSRERKRKSSRSYSSERRARE 454
>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 32.7 bits (73), Expect = 0.56 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -3 Query: 224 AELWNGRFAMLGLVALAATEIITG 153 AE+WNGR AMLG +AL E+I+G Sbjct: 355 AEVWNGRLAMLGFIAL-LVELISG 377
>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 32.0 bits (71), Expect = 0.95 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -3 Query: 236 MNANAELWNGRFAMLGLVALAATEIITG 153 M + AE WNGR AMLG +AL E+I+G Sbjct: 352 MTSAAERWNGRLAMLGFLAL-MIELISG 378
>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -3 Query: 236 MNANAELWNGRFAMLGLVALAATEIITG 153 +N ++E WNGR AMLG A E+I+G Sbjct: 355 LNTSSEAWNGRIAMLGFAAF-LLELISG 381
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -3 Query: 224 AELWNGRFAMLGLVALAATEIITGAPFINV 135 AEL NGR+AMLG+ + E+ T INV Sbjct: 95 AELVNGRWAMLGVAGMLLPEVFTKIGIINV 124
>NOL11_BRARE (Q4V9P9) Nucleolar protein 11-like| Length = 708 Score = 30.4 bits (67), Expect = 2.8 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +1 Query: 130 FYTLMKGAPVMISVAARATSPSMAKRPFQSSALAFMMVPALPSALS 267 F L+ + SV S +MAKR FQ +AF + P +P A++ Sbjct: 458 FLQLLDTRYLCYSVCPELLSLAMAKRDFQLCQIAFQLFPDIPEAVT 503
>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog| Length = 772 Score = 30.4 bits (67), Expect = 2.8 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Frame = -2 Query: 489 QGEHLDLGRDGVQRPGA----GAHQRAASHGRLRNGTCGGGRSRRRAPLAARQRHRAGVV 322 +G +GRD R + G QR+ S GR R+ + RSR R+ +R R+ Sbjct: 2 RGAGRQMGRDSRSRSRSVGRRGRKQRSRSRGRSRSRSRSRSRSRSRSRSRSRSHGRSS-- 59 Query: 321 RLHRXXXXXXXXXXASPGR--ERRGQSRHHHERQRGALEWPFRHA 193 R R S GR + G+ R R+ +L P H+ Sbjct: 60 RRRREHERRRERKRRSRGRRSDSEGEQRQKSRRRSQSLRPPRWHS 104
>SYFA_BACHD (Q9K895) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 344 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +1 Query: 409 TMASRPLMRSGAGPLNAIASQIEVLALGL 495 T+ RP+++ GA PL A +++E L +GL Sbjct: 96 TLPGRPVLKGGAHPLTATITEVEDLFIGL 124
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/50 (40%), Positives = 21/50 (42%) Frame = -2 Query: 468 GRDGVQRPGAGAHQRAASHGRLRNGTCGGGRSRRRAPLAARQRHRAGVVR 319 G G QR G H R GR R GGGR + RHR GV R Sbjct: 27 GGSGPQRRGGDNHGRGRGRGRGR----GGGRPGAPGGSGSGPRHRDGVRR 72
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 224 AELWNGRFAMLGLVALAATEIITGAPFINV*NKLAF 117 AE++NGR AML +V E++ + V NK+ F Sbjct: 10 AEVFNGRLAMLAIVGCVYPELLGNGVWFEVWNKVDF 45
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -3 Query: 233 NANAELWNGRFAMLGLVALAATEIITG 153 N ++E+WNGR AMLG A E+I+G Sbjct: 356 NNSSEVWNGRLAMLGFSAF-LLELISG 381
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 29.3 bits (64), Expect = 6.2 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -3 Query: 230 ANAELWNGRFAMLGLVALAATEIITGAPFINV*NKLAFLPT 108 A E+ NGRFAMLG A EI+ A I LA+ T Sbjct: 97 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQT 137
>CATK_CHICK (Q90686) Cathepsin K precursor (EC 3.4.22.38) (JTAP-1)| Length = 334 Score = 29.3 bits (64), Expect = 6.2 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Frame = +3 Query: 330 LPGAAAELREEP-------VAATCLHRKCRYEAYHG*PPVDALRRRAAERHRVPDRGARL 488 LP AAA+LR EP + + + + + P VD E HR P RGARL Sbjct: 14 LPMAAAQLRPEPELDAQWDLWKRTIQKAVQRQGGRNVPEVDL--GEEPEVHRCPQRGARL 71 Query: 489 G 491 G Sbjct: 72 G 72
>YCF17_GUITH (O78425) Hypothetical 6.2 kDa protein ycf17| Length = 53 Score = 29.3 bits (64), Expect = 6.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 233 NANAELWNGRFAMLGLVALAATEIIT 156 N AE WNGR AM+ + + E IT Sbjct: 17 NVYAENWNGRLAMISFLLIICVEFIT 42
>UAS3_HUMAN (P57075) Protein UBASH3A| Length = 661 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 63 YMSRCPTR*VQVVLSCRQES*FILHVDEGGARD 161 YM RC VQ+V +C Q++ IL V G D Sbjct: 561 YMDRCTASMVQIVNTCPQDTGVILIVSHGSTLD 593
>PIN3B_ORYSA (Q6L5F6) Putative auxin efflux carrier component 3b (OsPIN3b)| Length = 590 Score = 28.9 bits (63), Expect = 8.1 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = -2 Query: 480 HLDLGRDGVQRPGAGAHQRAASHGRLRNGTCGGGRSRRRAPLAARQR 340 H+D ++ A AH A GRLR C SRR A AA R Sbjct: 182 HVDPDVVSLEGSQAEAHAEVAPDGRLRMVVCRSSVSRRSAAAAATPR 228 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,801,734 Number of Sequences: 219361 Number of extensions: 900582 Number of successful extensions: 2807 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2790 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
